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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 248 |
| AccI | GTMKAC | 1 cut(s) | 569 |
| AccII | CGCG | 4 cut(s) | 117, 461, 563, 620 |
| AciI | CCGC | 8 cut(s) | 109, 134, 187, 213, 358, 437, 459, 618 |
| AclWI | GGATC | 3 cut(s) | 233, 383, 669 |
| AcoI | YGGCCR | 2 cut(s) | 11, 188 |
| AcsI | RAATTY | 1 cut(s) | 688 |
| AfaI | GTAC | 2 cut(s) | 336, 351 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 248, 354, 409, 658 |
| AgsI | TTSAA | 3 cut(s) | 425, 467, 505 |
| AluBI | AGCT | 5 cut(s) | 28, 50, 58, 369, 508 |
| AluI | AGCT | 5 cut(s) | 28, 50, 58, 369, 508 |
| Alw26I | GTCTC | 2 cut(s) | 32, 460 |
| AlwI | GGATC | 3 cut(s) | 233, 383, 669 |
| Ama87I | CYCGRG | 2 cut(s) | 167, 554 |
| AoxI | GGCC | 5 cut(s) | 11, 88, 144, 188, 489 |
| ApoI | RAATTY | 1 cut(s) | 688 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 525, 557 |
| AspS9I | GGNCC | 3 cut(s) | 89, 490, 644 |
| AsuHPI | GGTGA | 3 cut(s) | 93, 640, 656 |
| AvaI | CYCGRG | 2 cut(s) | 167, 554 |
| AvaII | GGWCC | 1 cut(s) | 644 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 318, 351 |
| BalI | TGGCCA | 1 cut(s) | 13 |
| BanII | GRGCYC | 1 cut(s) | 522 |
| BauI | CACGAG | 2 cut(s) | 290, 699 |
| BbsI | GAAGAC | 1 cut(s) | 535 |
| BccI | CCATC | 4 cut(s) | 80, 199, 385, 619 |
| BcoDI | GTCTC | 2 cut(s) | 32, 460 |
| BisI | GCNGC | 3 cut(s) | 188, 213, 618 |
| BlsI | GCNGC | 3 cut(s) | 189, 214, 619 |
| Bme18I | GGWCC | 1 cut(s) | 644 |
| BmeT110I | CYCGRG | 2 cut(s) | 167, 554 |
| BmgT120I | GGNCC | 3 cut(s) | 89, 490, 644 |
| BmiI | GGNNCC | 2 cut(s) | 206, 519 |
| BmsI | GCATC | 3 cut(s) | 145, 292, 424 |
| BpiI | GAAGAC | 1 cut(s) | 535 |
| BpuEI | CTTGAG | 2 cut(s) | 80, 479 |
| BsaAI | YACGTR | 1 cut(s) | 573 |
| BsaJI | CCNNGG | 3 cut(s) | 247, 321, 406 |
| BsaWI | WCCGGW | 1 cut(s) | 658 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 248, 354, 409, 658 |
| Bse3DI | GCAATG | 1 cut(s) | 713 |
| BseDI | CCNNGG | 3 cut(s) | 247, 321, 406 |
| BseGI | GGATG | 3 cut(s) | 136, 439, 448 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 248, 354, 409, 658 |
| BseMI | GCAATG | 1 cut(s) | 713 |
| BseRI | GAGGAG | 1 cut(s) | 278 |
| Bsh1236I | CGCG | 4 cut(s) | 117, 461, 563, 620 |
| BshFI | GGCC | 5 cut(s) | 13, 90, 146, 190, 491 |
| BsiHKCI | CYCGRG | 2 cut(s) | 167, 554 |
| BsiSI | CCGG | 1 cut(s) | 659 |
| BsiWI | CGTACG | 1 cut(s) | 349 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 248, 354, 409, 658 |
| BsmAI | GTCTC | 2 cut(s) | 32, 460 |
| BsnI | GGCC | 5 cut(s) | 13, 90, 146, 190, 491 |
| BsoBI | CYCGRG | 2 cut(s) | 167, 554 |
| Bsp1286I | GDGCHC | 1 cut(s) | 522 |
| Bsp143I | GATC | 4 cut(s) | 238, 388, 612, 661 |
| Bsp19I | CCATGG | 1 cut(s) | 247 |
| Bsp68I | TCGCGA | 1 cut(s) | 563 |
| BspACI | CCGC | 8 cut(s) | 109, 134, 187, 213, 358, 437, 459, 618 |
| BspANI | GGCC | 5 cut(s) | 13, 90, 146, 190, 491 |
| BspFNI | CGCG | 4 cut(s) | 117, 461, 563, 620 |
| BspLI | GGNNCC | 2 cut(s) | 206, 519 |
| BspPI | GGATC | 3 cut(s) | 233, 383, 669 |
| BsrDI | GCAATG | 1 cut(s) | 713 |
| BssECI | CCNNGG | 3 cut(s) | 247, 321, 406 |
| BssMI | GATC | 4 cut(s) | 238, 388, 612, 661 |
| BssNAI | GTATAC | 1 cut(s) | 570 |
| BssSI | CACGAG | 2 cut(s) | 290, 699 |
| BssT1I | CCWWGG | 3 cut(s) | 247, 321, 406 |
| Bst1107I | GTATAC | 1 cut(s) | 570 |
| Bst2BI | CACGAG | 2 cut(s) | 290, 699 |
| Bst4CI | ACNGT | 2 cut(s) | 349, 354 |
| Bst6I | CTCTTC | 1 cut(s) | 408 |
| BstBAI | YACGTR | 1 cut(s) | 573 |
| BstC8I | GCNNGC | 1 cut(s) | 360 |
| BstDEI | CTNAG | 1 cut(s) | 513 |
| BstDSI | CCRYGG | 1 cut(s) | 247 |
| BstF5I | GGATG | 3 cut(s) | 136, 439, 448 |
| BstFNI | CGCG | 4 cut(s) | 117, 461, 563, 620 |
| BstKTI | GATC | 4 cut(s) | 241, 391, 615, 664 |
| BstMAI | GTCTC | 2 cut(s) | 32, 460 |
| BstMBI | GATC | 4 cut(s) | 238, 388, 612, 661 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 505 |
| BstSNI | TACGTA | 1 cut(s) | 573 |
| BstUI | CGCG | 4 cut(s) | 117, 461, 563, 620 |
| BstV2I | GAAGAC | 1 cut(s) | 535 |
| BstZ17I | GTATAC | 1 cut(s) | 570 |
| BsuRI | GGCC | 5 cut(s) | 13, 90, 146, 190, 491 |
| BtgI | CCRYGG | 1 cut(s) | 247 |
| BtsCI | GGATG | 3 cut(s) | 136, 439, 448 |
| BtuMI | TCGCGA | 1 cut(s) | 563 |
| Cac8I | GCNNGC | 1 cut(s) | 360 |
| Cfr13I | GGNCC | 3 cut(s) | 89, 490, 644 |
| Csp6I | GTAC | 2 cut(s) | 335, 350 |
| CviAII | CATG | 4 cut(s) | 228, 236, 248, 593 |
| CviQI | GTAC | 2 cut(s) | 335, 350 |
| DdeI | CTNAG | 1 cut(s) | 513 |
| DpnI | GATC | 4 cut(s) | 240, 390, 614, 663 |
| DpnII | GATC | 4 cut(s) | 238, 388, 612, 661 |
| EaeI | YGGCCR | 2 cut(s) | 11, 188 |
| Eam1104I | CTCTTC | 1 cut(s) | 408 |
| EarI | CTCTTC | 1 cut(s) | 408 |
| Eco105I | TACGTA | 1 cut(s) | 573 |
| Eco130I | CCWWGG | 3 cut(s) | 247, 321, 406 |
| Eco24I | GRGCYC | 1 cut(s) | 522 |
| Eco47I | GGWCC | 1 cut(s) | 644 |
| Eco88I | CYCGRG | 2 cut(s) | 167, 554 |
| EcoT14I | CCWWGG | 3 cut(s) | 247, 321, 406 |
| EcoT38I | GRGCYC | 1 cut(s) | 522 |
| ErhI | CCWWGG | 3 cut(s) | 247, 321, 406 |
| FaeI | CATG | 4 cut(s) | 231, 239, 251, 596 |
| FatI | CATG | 4 cut(s) | 227, 235, 247, 592 |
| FauI | CCCGC | 1 cut(s) | 351 |
| FblI | GTMKAC | 1 cut(s) | 569 |
| Fnu4HI | GCNGC | 3 cut(s) | 188, 213, 618 |
| FokI | GGATG | 3 cut(s) | 123, 446, 455 |
| FriOI | GRGCYC | 1 cut(s) | 522 |
| Fsp4HI | GCNGC | 3 cut(s) | 188, 213, 618 |
| GluI | GCNGC | 3 cut(s) | 188, 213, 618 |
| HaeIII | GGCC | 5 cut(s) | 13, 90, 146, 190, 491 |
| HapII | CCGG | 1 cut(s) | 659 |
| Hin1II | CATG | 4 cut(s) | 231, 239, 251, 596 |
| HindIII | AAGCTT | 1 cut(s) | 26 |
| HinfI | GANTC | 3 cut(s) | 160, 302, 705 |
| HpaII | CCGG | 1 cut(s) | 659 |
| HphI | GGTGA | 3 cut(s) | 93, 640, 656 |
| Hpy166II | GTNNAC | 1 cut(s) | 570 |
| Hpy188I | TCNGA | 3 cut(s) | 35, 141, 644 |
| Hpy188III | TCNNGA | 3 cut(s) | 263, 425, 562 |
| Hpy8I | GTNNAC | 1 cut(s) | 570 |
| Hpy99I | CGWCG | 1 cut(s) | 568 |
| HpyAV | CCTTC | 2 cut(s) | 136, 662 |
| HpyCH4III | ACNGT | 2 cut(s) | 349, 354 |
| HpyCH4IV | ACGT | 3 cut(s) | 329, 566, 572 |
| HpyCH4V | TGCA | 1 cut(s) | 686 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 505 |
| HpyF3I | CTNAG | 1 cut(s) | 513 |
| HpySE526I | ACGT | 3 cut(s) | 329, 566, 572 |
| Hsp92II | CATG | 4 cut(s) | 231, 239, 251, 596 |
| Kzo9I | GATC | 4 cut(s) | 238, 388, 612, 661 |
| LmnI | GCTCC | 3 cut(s) | 47, 204, 517 |
| LpnPI | CCDG | 2 cut(s) | 351, 672 |
| LweI | GCATC | 3 cut(s) | 145, 292, 424 |
| MaeII | ACGT | 3 cut(s) | 329, 566, 572 |
| MalI | GATC | 4 cut(s) | 240, 390, 614, 663 |
| MboI | GATC | 4 cut(s) | 238, 388, 612, 661 |
| MboII | GAAGA | 6 cut(s) | 230, 285, 425, 493, 535, 634 |
| MfeI | CAATTG | 1 cut(s) | 500 |
| MhlI | GDGCHC | 1 cut(s) | 522 |
| MlsI | TGGCCA | 1 cut(s) | 13 |
| MluCI | AATT | 3 cut(s) | 176, 500, 688 |
| MluNI | TGGCCA | 1 cut(s) | 13 |
| MmeI | TCCRAC | 1 cut(s) | 250 |
| MnlI | CCTC | 7 cut(s) | 55, 109, 141, 299, 424, 433, 503 |
| Mox20I | TGGCCA | 1 cut(s) | 13 |
| MscI | TGGCCA | 1 cut(s) | 13 |
| MseI | TTAA | 2 cut(s) | 183, 525 |
| Msp20I | TGGCCA | 1 cut(s) | 13 |
| MspA1I | CMGCKG | 1 cut(s) | 111 |
| MspI | CCGG | 1 cut(s) | 659 |
| MunI | CAATTG | 1 cut(s) | 500 |
| MvnI | CGCG | 4 cut(s) | 117, 461, 563, 620 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 505 |
| NcoI | CCATGG | 1 cut(s) | 247 |
| NdeII | GATC | 4 cut(s) | 238, 388, 612, 661 |
| NlaIII | CATG | 4 cut(s) | 231, 239, 251, 596 |
| NlaIV | GGNNCC | 2 cut(s) | 206, 519 |
| NmeAIII | GCCGAG | 2 cut(s) | 177, 467 |
| NruI | TCGCGA | 1 cut(s) | 563 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 297 |
| PfeI | GAWTC | 3 cut(s) | 160, 302, 705 |
| Pfl23II | CGTACG | 1 cut(s) | 349 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 248 |
| PkrI | GCNGC | 3 cut(s) | 189, 214, 619 |
| Ppu21I | YACGTR | 1 cut(s) | 573 |
| PspLI | CGTACG | 1 cut(s) | 349 |
| PspN4I | GGNNCC | 2 cut(s) | 206, 519 |
| PspPI | GGNCC | 3 cut(s) | 89, 490, 644 |
| RruI | TCGCGA | 1 cut(s) | 563 |
| RsaI | GTAC | 2 cut(s) | 336, 351 |
| RsaNI | GTAC | 2 cut(s) | 335, 350 |
| SaqAI | TTAA | 2 cut(s) | 183, 525 |
| SatI | GCNGC | 3 cut(s) | 188, 213, 618 |
| Sau3AI | GATC | 4 cut(s) | 238, 388, 612, 661 |
| Sau96I | GGNCC | 3 cut(s) | 89, 490, 644 |
| SduI | GDGCHC | 1 cut(s) | 522 |
| SfaNI | GCATC | 3 cut(s) | 145, 292, 424 |
| SinI | GGWCC | 1 cut(s) | 644 |
| SmlI | CTYRAG | 2 cut(s) | 59, 494 |
| SmoI | CTYRAG | 2 cut(s) | 59, 494 |
| SnaBI | TACGTA | 1 cut(s) | 573 |
| Sse9I | AATT | 3 cut(s) | 176, 500, 688 |
| SsiI | CCGC | 8 cut(s) | 109, 134, 187, 213, 358, 437, 459, 618 |
| SspI | AATATT | 1 cut(s) | 682 |
| StyI | CCWWGG | 3 cut(s) | 247, 321, 406 |
| TaaI | ACNGT | 2 cut(s) | 349, 354 |
| TaiI | ACGT | 3 cut(s) | 332, 569, 575 |
| TaqI | TCGA | 1 cut(s) | 84 |
| TasI | AATT | 3 cut(s) | 176, 500, 688 |
| TauI | GCSGC | 3 cut(s) | 190, 215, 620 |
| TfiI | GAWTC | 3 cut(s) | 160, 302, 705 |
| Tru1I | TTAA | 2 cut(s) | 183, 525 |
| Tru9I | TTAA | 2 cut(s) | 183, 525 |
| TspDTI | ATGAA | 2 cut(s) | 621, 682 |
| TspGWI | ACGGA | 1 cut(s) | 295 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 248 |
| VpaK11BI | GGWCC | 1 cut(s) | 644 |
| XapI | RAATTY | 1 cut(s) | 688 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 198 |
| XmiI | GTMKAC | 1 cut(s) | 569 |