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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 185, 872 |
| AccII | CGCG | 4 cut(s) | 148, 288, 490, 636 |
| AciI | CCGC | 9 cut(s) | 146, 247, 288, 307, 321, 531, 769, 827, 900 |
| AclWI | GGATC | 5 cut(s) | 56, 298, 331, 414, 857 |
| AcuI | CTGAAG | 1 cut(s) | 376 |
| AfaI | GTAC | 1 cut(s) | 681 |
| AfeI | AGCGCT | 1 cut(s) | 215 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 392, 881, 899 |
| AgsI | TTSAA | 5 cut(s) | 19, 81, 221, 278, 383 |
| AjnI | CCWGG | 5 cut(s) | 186, 346, 575, 719, 840 |
| AluBI | AGCT | 5 cut(s) | 231, 525, 727, 819, 897 |
| AluI | AGCT | 5 cut(s) | 231, 525, 727, 819, 897 |
| Alw26I | GTCTC | 1 cut(s) | 45 |
| AlwI | GGATC | 5 cut(s) | 56, 298, 331, 414, 857 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 528, 651, 663 |
| Aor51HI | AGCGCT | 1 cut(s) | 215 |
| AoxI | GGCC | 4 cut(s) | 340, 409, 562, 613 |
| ApeKI | GCWGC | 6 cut(s) | 158, 191, 243, 534, 812, 897 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 245, 277 |
| AspA2I | CCTAGG | 1 cut(s) | 413 |
| AspLEI | GCGC | 3 cut(s) | 216, 227, 490 |
| AspS9I | GGNCC | 2 cut(s) | 340, 410 |
| AsuC2I | CCSGG | 1 cut(s) | 30 |
| AsuHPI | GGTGA | 3 cut(s) | 410, 872, 882 |
| AvrII | CCTAGG | 1 cut(s) | 413 |
| BaeGI | GKGCMC | 1 cut(s) | 478 |
| BbsI | GAAGAC | 1 cut(s) | 597 |
| BbvCI | CCTCAGC | 1 cut(s) | 877 |
| BbvI | GCAGC | 6 cut(s) | 170, 203, 230, 521, 824, 884 |
| BccI | CCATC | 5 cut(s) | 92, 246, 291, 330, 551 |
| BceAI | ACGGC | 1 cut(s) | 437 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 39, 73 |
| BciT130I | CCWGG | 5 cut(s) | 188, 348, 577, 721, 842 |
| BciVI | GTATCC | 1 cut(s) | 762 |
| BcnI | CCSGG | 1 cut(s) | 30 |
| BcoDI | GTCTC | 1 cut(s) | 45 |
| BfaI | CTAG | 1 cut(s) | 414 |
| BfmI | CTRYAG | 1 cut(s) | 796 |
| BfoI | RGCGCY | 1 cut(s) | 217 |
| BfuAI | ACCTGC | 2 cut(s) | 185, 872 |
| BfuI | GTATCC | 1 cut(s) | 762 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 348 |
| BglII | AGATCT | 1 cut(s) | 107 |
| BisI | GCNGC | 8 cut(s) | 159, 192, 244, 247, 532, 535, 813, 898 |
| BlnI | CCTAGG | 1 cut(s) | 413 |
| BlsI | GCNGC | 8 cut(s) | 160, 193, 245, 248, 533, 536, 814, 899 |
| Bme1390I | CCNGG | 6 cut(s) | 30, 188, 348, 577, 721, 842 |
| BmgT120I | GGNCC | 2 cut(s) | 340, 410 |
| BmiI | GGNNCC | 2 cut(s) | 141, 341 |
| BmrFI | CCNGG | 6 cut(s) | 30, 188, 348, 577, 721, 842 |
| BmsI | GCATC | 3 cut(s) | 318, 391, 895 |
| BoxI | GACNNNNGTC | 1 cut(s) | 672 |
| BpiI | GAAGAC | 1 cut(s) | 597 |
| BpmI | CTGGAG | 1 cut(s) | 792 |
| Bpu10I | CCTNAGC | 1 cut(s) | 877 |
| BpuMI | CCSGG | 1 cut(s) | 30 |
| BsaJI | CCNNGG | 4 cut(s) | 413, 434, 565, 841 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 392, 881, 899 |
| Bse1I | ACTGG | 3 cut(s) | 457, 677, 752 |
| BseBI | CCWGG | 5 cut(s) | 188, 348, 577, 721, 842 |
| BseDI | CCNNGG | 4 cut(s) | 413, 434, 565, 841 |
| BseGI | GGATG | 1 cut(s) | 341 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 392, 881, 899 |
| BseMII | CTCAG | 1 cut(s) | 891 |
| BseNI | ACTGG | 3 cut(s) | 457, 677, 752 |
| BseRI | GAGGAG | 2 cut(s) | 132, 798 |
| BseSI | GKGCMC | 1 cut(s) | 478 |
| BseXI | GCAGC | 6 cut(s) | 170, 203, 230, 521, 824, 884 |
| BseYI | CCCAGC | 1 cut(s) | 448 |
| BsgI | GTGCAG | 1 cut(s) | 664 |
| Bsh1236I | CGCG | 4 cut(s) | 148, 288, 490, 636 |
| BshFI | GGCC | 4 cut(s) | 342, 411, 564, 615 |
| BsiSI | CCGG | 1 cut(s) | 30 |
| BslFI | GGGAC | 1 cut(s) | 662 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 392, 881, 899 |
| BsmAI | GTCTC | 1 cut(s) | 45 |
| BsmFI | GGGAC | 1 cut(s) | 662 |
| BsmI | GAATGC | 1 cut(s) | 284 |
| BsnI | GGCC | 4 cut(s) | 342, 411, 564, 615 |
| Bsp1286I | GDGCHC | 1 cut(s) | 478 |
| Bsp143I | GATC | 7 cut(s) | 61, 107, 290, 323, 419, 757, 849 |
| Bsp68I | TCGCGA | 1 cut(s) | 636 |
| BspACI | CCGC | 9 cut(s) | 146, 247, 288, 307, 321, 531, 769, 827, 900 |
| BspANI | GGCC | 4 cut(s) | 342, 411, 564, 615 |
| BspCNI | CTCAG | 1 cut(s) | 890 |
| BspFNI | CGCG | 4 cut(s) | 148, 288, 490, 636 |
| BspLI | GGNNCC | 2 cut(s) | 141, 341 |
| BspMAI | CTGCAG | 1 cut(s) | 800 |
| BspMI | ACCTGC | 2 cut(s) | 185, 872 |
| BspPI | GGATC | 5 cut(s) | 56, 298, 331, 414, 857 |
| BsrI | ACTGG | 3 cut(s) | 457, 677, 752 |
| BssECI | CCNNGG | 4 cut(s) | 413, 434, 565, 841 |
| BssMI | GATC | 7 cut(s) | 61, 107, 290, 323, 419, 757, 849 |
| BssT1I | CCWWGG | 3 cut(s) | 413, 434, 565 |
| Bst2UI | CCWGG | 5 cut(s) | 188, 348, 577, 721, 842 |
| Bst4CI | ACNGT | 1 cut(s) | 653 |
| BstC8I | GCNNGC | 3 cut(s) | 229, 817, 838 |
| BstDEI | CTNAG | 2 cut(s) | 298, 877 |
| BstEII | GGTNACC | 1 cut(s) | 498 |
| BstF5I | GGATG | 1 cut(s) | 341 |
| BstFNI | CGCG | 4 cut(s) | 148, 288, 490, 636 |
| BstH2I | RGCGCY | 1 cut(s) | 217 |
| BstHHI | GCGC | 3 cut(s) | 216, 227, 490 |
| BstKTI | GATC | 7 cut(s) | 64, 110, 293, 326, 422, 760, 852 |
| BstMAI | GTCTC | 1 cut(s) | 45 |
| BstMBI | GATC | 7 cut(s) | 61, 107, 290, 323, 419, 757, 849 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 111, 222, 348, 531, 642, 894 |
| BstNI | CCWGG | 5 cut(s) | 188, 348, 577, 721, 842 |
| BstNSI | RCATGY | 1 cut(s) | 840 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 672 |
| BstPI | GGTNACC | 1 cut(s) | 498 |
| BstSCI | CCNGG | 6 cut(s) | 28, 186, 346, 575, 719, 840 |
| BstSFI | CTRYAG | 1 cut(s) | 796 |
| BstSLI | GKGCMC | 1 cut(s) | 478 |
| BstUI | CGCG | 4 cut(s) | 148, 288, 490, 636 |
| BstV1I | GCAGC | 6 cut(s) | 170, 203, 230, 521, 824, 884 |
| BstV2I | GAAGAC | 1 cut(s) | 597 |
| BstX2I | RGATCY | 2 cut(s) | 107, 323 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 510 |
| BstYI | RGATCY | 2 cut(s) | 107, 323 |
| BsuI | GTATCC | 1 cut(s) | 762 |
| BsuRI | GGCC | 4 cut(s) | 342, 411, 564, 615 |
| BtgZI | GCGATG | 2 cut(s) | 224, 269 |
| BtsCI | GGATG | 1 cut(s) | 341 |
| BtsI | GCAGTG | 1 cut(s) | 805 |
| BtsIMutI | CAGTG | 1 cut(s) | 805 |
| BtuMI | TCGCGA | 1 cut(s) | 636 |
| BveI | ACCTGC | 2 cut(s) | 185, 872 |
| Cac8I | GCNNGC | 3 cut(s) | 229, 817, 838 |
| CaiI | CAGNNNCTG | 3 cut(s) | 528, 651, 663 |
| CfoI | GCGC | 3 cut(s) | 216, 227, 490 |
| Cfr13I | GGNCC | 2 cut(s) | 340, 410 |
| CseI | GACGC | 2 cut(s) | 111, 249 |
| Csp6I | GTAC | 1 cut(s) | 680 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 340, 375, 812, 847 |
| CviAII | CATG | 2 cut(s) | 387, 837 |
| CviQI | GTAC | 1 cut(s) | 680 |
| DdeI | CTNAG | 2 cut(s) | 298, 877 |
| DpnI | GATC | 7 cut(s) | 63, 109, 292, 325, 421, 759, 851 |
| DpnII | GATC | 7 cut(s) | 61, 107, 290, 323, 419, 757, 849 |
| Eco130I | CCWWGG | 3 cut(s) | 413, 434, 565 |
| Eco147I | AGGCCT | 1 cut(s) | 564 |
| Eco47III | AGCGCT | 1 cut(s) | 215 |
| Eco57I | CTGAAG | 1 cut(s) | 376 |
| Eco91I | GGTNACC | 1 cut(s) | 498 |
| EcoO65I | GGTNACC | 1 cut(s) | 498 |
| EcoRII | CCWGG | 5 cut(s) | 186, 346, 575, 719, 840 |
| EcoT14I | CCWWGG | 3 cut(s) | 413, 434, 565 |
| ErhI | CCWWGG | 3 cut(s) | 413, 434, 565 |
| FaeI | CATG | 2 cut(s) | 390, 840 |
| FaqI | GGGAC | 1 cut(s) | 662 |
| FatI | CATG | 2 cut(s) | 386, 836 |
| FauI | CCCGC | 1 cut(s) | 834 |
| Fnu4HI | GCNGC | 8 cut(s) | 159, 192, 244, 247, 532, 535, 813, 898 |
| FokI | GGATG | 1 cut(s) | 348 |
| Fsp4HI | GCNGC | 8 cut(s) | 159, 192, 244, 247, 532, 535, 813, 898 |
| FspBI | CTAG | 1 cut(s) | 414 |
| GlaI | GCGC | 3 cut(s) | 215, 226, 489 |
| GluI | GCNGC | 8 cut(s) | 159, 192, 244, 247, 532, 535, 813, 898 |
| GsaI | CCCAGC | 1 cut(s) | 452 |
| GsuI | CTGGAG | 1 cut(s) | 792 |
| HaeII | RGCGCY | 1 cut(s) | 217 |
| HaeIII | GGCC | 4 cut(s) | 342, 411, 564, 615 |
| HapII | CCGG | 1 cut(s) | 30 |
| HgaI | GACGC | 2 cut(s) | 111, 249 |
| HhaI | GCGC | 3 cut(s) | 216, 227, 490 |
| Hin1II | CATG | 2 cut(s) | 390, 840 |
| Hin6I | GCGC | 3 cut(s) | 214, 225, 488 |
| HinP1I | GCGC | 3 cut(s) | 214, 225, 488 |
| HinfI | GANTC | 2 cut(s) | 167, 863 |
| HpaII | CCGG | 1 cut(s) | 30 |
| HphI | GGTGA | 3 cut(s) | 410, 872, 882 |
| Hpy166II | GTNNAC | 1 cut(s) | 609 |
| Hpy188I | TCNGA | 2 cut(s) | 134, 659 |
| Hpy188III | TCNNGA | 5 cut(s) | 275, 635, 711, 755, 761 |
| Hpy8I | GTNNAC | 1 cut(s) | 609 |
| HpyAV | CCTTC | 4 cut(s) | 27, 215, 386, 773 |
| HpyCH4III | ACNGT | 1 cut(s) | 653 |
| HpyCH4V | TGCA | 7 cut(s) | 177, 368, 404, 645, 735, 798, 836 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 111, 222, 348, 531, 642, 894 |
| HpyF3I | CTNAG | 2 cut(s) | 298, 877 |
| Hsp92II | CATG | 2 cut(s) | 390, 840 |
| HspAI | GCGC | 3 cut(s) | 214, 225, 488 |
| Kzo9I | GATC | 7 cut(s) | 61, 107, 290, 323, 419, 757, 849 |
| LmnI | GCTCC | 2 cut(s) | 36, 145 |
| Lsp1109I | GCAGC | 6 cut(s) | 170, 203, 230, 521, 824, 884 |
| LweI | GCATC | 3 cut(s) | 318, 391, 895 |
| MaeI | CTAG | 1 cut(s) | 414 |
| MaeIII | GTNAC | 4 cut(s) | 197, 498, 665, 800 |
| MalI | GATC | 7 cut(s) | 63, 109, 292, 325, 421, 759, 851 |
| MboI | GATC | 7 cut(s) | 61, 107, 290, 323, 419, 757, 849 |
| MboII | GAAGA | 4 cut(s) | 15, 107, 508, 602 |
| MfeI | CAATTG | 1 cut(s) | 55 |
| MflI | RGATCY | 2 cut(s) | 107, 323 |
| MhlI | GDGCHC | 1 cut(s) | 478 |
| MluCI | AATT | 2 cut(s) | 55, 378 |
| MlyI | GAGTC | 1 cut(s) | 161 |
| MnlI | CCTC | 8 cut(s) | 153, 389, 631, 692, 776, 816, 839, 886 |
| MspI | CCGG | 1 cut(s) | 30 |
| MspR9I | CCNGG | 6 cut(s) | 30, 188, 348, 577, 721, 842 |
| MunI | CAATTG | 1 cut(s) | 55 |
| Mva1269I | GAATGC | 1 cut(s) | 284 |
| MvaI | CCWGG | 5 cut(s) | 188, 348, 577, 721, 842 |
| MvnI | CGCG | 4 cut(s) | 148, 288, 490, 636 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 111, 222, 348, 531, 642, 894 |
| NciI | CCSGG | 1 cut(s) | 30 |
| NdeII | GATC | 7 cut(s) | 61, 107, 290, 323, 419, 757, 849 |
| NlaIII | CATG | 2 cut(s) | 390, 840 |
| NlaIV | GGNNCC | 2 cut(s) | 141, 341 |
| NmeAIII | GCCGAG | 1 cut(s) | 387 |
| NmuCI | GTSAC | 3 cut(s) | 197, 665, 800 |
| NruI | TCGCGA | 1 cut(s) | 636 |
| NspI | RCATGY | 1 cut(s) | 840 |
| PaeI | GCATGC | 1 cut(s) | 840 |
| PceI | AGGCCT | 1 cut(s) | 564 |
| PctI | GAATGC | 1 cut(s) | 284 |
| PfeI | GAWTC | 1 cut(s) | 863 |
| PflFI | GACNNNGTC | 1 cut(s) | 653 |
| PfoI | TCCNGGA | 1 cut(s) | 28 |
| PkrI | GCNGC | 8 cut(s) | 160, 193, 245, 248, 533, 536, 814, 899 |
| PleI | GAGTC | 1 cut(s) | 161 |
| PpsI | GAGTC | 1 cut(s) | 161 |
| PshAI | GACNNNNGTC | 1 cut(s) | 672 |
| Psp6I | CCWGG | 5 cut(s) | 186, 346, 575, 719, 840 |
| PspEI | GGTNACC | 1 cut(s) | 498 |
| PspFI | CCCAGC | 1 cut(s) | 448 |
| PspGI | CCWGG | 5 cut(s) | 186, 346, 575, 719, 840 |
| PspN4I | GGNNCC | 2 cut(s) | 141, 341 |
| PspPI | GGNCC | 2 cut(s) | 340, 410 |
| PstI | CTGCAG | 1 cut(s) | 800 |
| PstNI | CAGNNNCTG | 3 cut(s) | 528, 651, 663 |
| PsuI | RGATCY | 2 cut(s) | 107, 323 |
| PsyI | GACNNNGTC | 1 cut(s) | 653 |
| RruI | TCGCGA | 1 cut(s) | 636 |
| RsaI | GTAC | 1 cut(s) | 681 |
| RsaNI | GTAC | 1 cut(s) | 680 |
| SatI | GCNGC | 8 cut(s) | 159, 192, 244, 247, 532, 535, 813, 898 |
| Sau3AI | GATC | 7 cut(s) | 61, 107, 290, 323, 419, 757, 849 |
| Sau96I | GGNCC | 2 cut(s) | 340, 410 |
| SchI | GAGTC | 1 cut(s) | 161 |
| ScrFI | CCNGG | 6 cut(s) | 30, 188, 348, 577, 721, 842 |
| SduI | GDGCHC | 1 cut(s) | 478 |
| SfaNI | GCATC | 3 cut(s) | 318, 391, 895 |
| SfcI | CTRYAG | 1 cut(s) | 796 |
| SphI | GCATGC | 1 cut(s) | 840 |
| Sse9I | AATT | 2 cut(s) | 55, 378 |
| SseBI | AGGCCT | 1 cut(s) | 564 |
| SsiI | CCGC | 9 cut(s) | 146, 247, 288, 307, 321, 531, 769, 827, 900 |
| SspMI | CTAG | 1 cut(s) | 414 |
| StuI | AGGCCT | 1 cut(s) | 564 |
| StyD4I | CCNGG | 6 cut(s) | 28, 186, 346, 575, 719, 840 |
| StyI | CCWWGG | 3 cut(s) | 413, 434, 565 |
| TaaI | ACNGT | 1 cut(s) | 653 |
| TaqI | TCGA | 3 cut(s) | 154, 739, 777 |
| TasI | AATT | 2 cut(s) | 55, 378 |
| TatI | WGTACW | 1 cut(s) | 679 |
| TauI | GCSGC | 2 cut(s) | 249, 534 |
| TfiI | GAWTC | 1 cut(s) | 863 |
| TscAI | CASTG | 1 cut(s) | 805 |
| TseFI | GTSAC | 3 cut(s) | 197, 665, 800 |
| TseI | GCWGC | 6 cut(s) | 158, 191, 243, 534, 812, 897 |
| Tsp45I | GTSAC | 3 cut(s) | 197, 665, 800 |
| TspDTI | ATGAA | 1 cut(s) | 589 |
| TspGWI | ACGGA | 1 cut(s) | 318 |
| TspRI | CASTG | 1 cut(s) | 805 |
| Tth111I | GACNNNGTC | 1 cut(s) | 653 |
| XceI | RCATGY | 1 cut(s) | 840 |
| XmaJI | CCTAGG | 1 cut(s) | 413 |
| XspI | CTAG | 1 cut(s) | 414 |