TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 85 - 152 | 1e-19 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 321 - 425 | 2.9e-10 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 390 - 445 | 1.3e-06 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 435 - 515 | 9.7e-16 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 482 - 588 | 3.4e-15 | Leucine-rich repeat region |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 471 |
| AccB1I | GGYRCC | 1 cut(s) | 1767 |
| AccBSI | CCGCTC | 3 cut(s) | 644, 1803, 2615 |
| AccII | CGCG | 1 cut(s) | 150 |
| AciI | CCGC | 4 cut(s) | 150, 644, 1803, 2613 |
| AclI | AACGTT | 2 cut(s) | 540, 1055 |
| AclWI | GGATC | 7 cut(s) | 249, 855, 1143, 1320, 1389, 2340, 2682 |
| AcoI | YGGCCR | 1 cut(s) | 2578 |
| AcsI | RAATTY | 6 cut(s) | 65, 865, 1015, 1223, 2036, 2439 |
| AcuI | CTGAAG | 1 cut(s) | 239 |
| AcvI | CACGTG | 1 cut(s) | 307 |
| AdeI | CACNNNGTG | 2 cut(s) | 250, 1721 |
| AfaI | GTAC | 4 cut(s) | 1141, 1293, 1406, 2895 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 776, 890, 1358, 1583, 1777, 1903 |
| AflII | CTTAAG | 2 cut(s) | 685, 1063 |
| AflIII | ACRYGT | 4 cut(s) | 304, 1476, 2317, 2432 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2260 |
| AjnI | CCWGG | 6 cut(s) | 466, 1094, 1876, 2327, 2352, 2736 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 736, 768, 2468, 2500 |
| Alw21I | GWGCWC | 2 cut(s) | 360, 1035 |
| Alw26I | GTCTC | 5 cut(s) | 938, 1250, 1286, 1748, 2354 |
| Alw44I | GTGCAC | 1 cut(s) | 1031 |
| AlwI | GGATC | 7 cut(s) | 249, 855, 1143, 1320, 1389, 2340, 2682 |
| Ama87I | CYCGRG | 1 cut(s) | 566 |
| AoxI | GGCC | 8 cut(s) | 109, 369, 701, 1666, 2301, 2305, 2578, 2856 |
| ApaLI | GTGCAC | 1 cut(s) | 1031 |
| ApeKI | GCWGC | 6 cut(s) | 176, 333, 858, 1735, 2531, 2849 |
| ApoI | RAATTY | 6 cut(s) | 65, 865, 1015, 1223, 2036, 2439 |
| AseI | ATTAAT | 2 cut(s) | 321, 351 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 261, 1830 |
| AspS9I | GGNCC | 2 cut(s) | 370, 2731 |
| AsuC2I | CCSGG | 3 cut(s) | 2193, 2412, 2887 |
| AsuHPI | GGTGA | 7 cut(s) | 302, 447, 1270, 2399, 2438, 2774, 2789 |
| AsuII | TTCGAA | 1 cut(s) | 2156 |
| AsuNHI | GCTAGC | 1 cut(s) | 2816 |
| AvaI | CYCGRG | 1 cut(s) | 566 |
| AvaII | GGWCC | 1 cut(s) | 2731 |
| BaeGI | GKGCMC | 2 cut(s) | 1035, 1772 |
| BalI | TGGCCA | 1 cut(s) | 2580 |
| BanI | GGYRCC | 1 cut(s) | 1767 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2391, 2423 |
| BauI | CACGAG | 1 cut(s) | 1034 |
| BbrPI | CACGTG | 1 cut(s) | 307 |
| BbsI | GAAGAC | 1 cut(s) | 2009 |
| Bbv12I | GWGCWC | 2 cut(s) | 360, 1035 |
| BbvI | GCAGC | 6 cut(s) | 163, 345, 845, 1722, 2543, 2861 |
| BccI | CCATC | 9 cut(s) | 179, 227, 662, 736, 791, 2230, 2263, 2753, 2801 |
| BceAI | ACGGC | 1 cut(s) | 183 |
| BciT130I | CCWGG | 6 cut(s) | 468, 1096, 1878, 2329, 2354, 2738 |
| BciVI | GTATCC | 1 cut(s) | 794 |
| BclI | TGATCA | 4 cut(s) | 1870, 2620, 2764, 2902 |
| BcnI | CCSGG | 3 cut(s) | 2193, 2412, 2887 |
| BcoDI | GTCTC | 5 cut(s) | 938, 1250, 1286, 1748, 2354 |
| BfaI | CTAG | 5 cut(s) | 515, 2309, 2457, 2663, 2817 |
| BfmI | CTRYAG | 1 cut(s) | 1901 |
| BfrI | CTTAAG | 2 cut(s) | 685, 1063 |
| BfuAI | ACCTGC | 1 cut(s) | 471 |
| BfuI | GTATCC | 1 cut(s) | 794 |
| BisI | GCNGC | 6 cut(s) | 177, 334, 859, 1736, 2532, 2850 |
| BlsI | GCNGC | 6 cut(s) | 178, 335, 860, 1737, 2533, 2851 |
| BmcAI | AGTACT | 1 cut(s) | 1293 |
| Bme1390I | CCNGG | 9 cut(s) | 468, 1096, 1878, 2193, 2329, 2354, 2412, 2738, 2887 |
| Bme18I | GGWCC | 1 cut(s) | 2731 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2260 |
| BmeT110I | CYCGRG | 1 cut(s) | 566 |
| BmgT120I | GGNCC | 2 cut(s) | 370, 2731 |
| BmiI | GGNNCC | 4 cut(s) | 190, 1769, 2732, 2919 |
| BmrFI | CCNGG | 9 cut(s) | 468, 1096, 1878, 2193, 2329, 2354, 2412, 2738, 2887 |
| BmrI | ACTGGG | 1 cut(s) | 1205 |
| BmsI | GCATC | 9 cut(s) | 61, 396, 558, 789, 889, 1830, 1913, 1991, 2037 |
| BmtI | GCTAGC | 1 cut(s) | 2820 |
| BmuI | ACTGGG | 1 cut(s) | 1205 |
| BpiI | GAAGAC | 1 cut(s) | 2009 |
| BpmI | CTGGAG | 2 cut(s) | 592, 678 |
| Bpu14I | TTCGAA | 1 cut(s) | 2156 |
| BpuEI | CTTGAG | 4 cut(s) | 90, 962, 1031, 1801 |
| BpuMI | CCSGG | 3 cut(s) | 2193, 2412, 2887 |
| BsaAI | YACGTR | 2 cut(s) | 307, 2433 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2450, 2763 |
| BsaI | GGTCTC | 1 cut(s) | 1748 |
| BsaJI | CCNNGG | 8 cut(s) | 466, 567, 770, 1116, 1254, 2328, 2704, 2886 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2651, 2681 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 776, 890, 1358, 1583, 1777, 1903 |
| Bse118I | RCCGGY | 1 cut(s) | 2303 |
| Bse1I | ACTGG | 4 cut(s) | 1200, 1782, 2178, 2428 |
| Bse3DI | GCAATG | 2 cut(s) | 270, 2818 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2450, 2763 |
| BseBI | CCWGG | 6 cut(s) | 468, 1096, 1878, 2329, 2354, 2738 |
| BseDI | CCNNGG | 8 cut(s) | 466, 567, 770, 1116, 1254, 2328, 2704, 2886 |
| BseJI | GATNNNNATC | 2 cut(s) | 2450, 2763 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 776, 890, 1358, 1583, 1777, 1903 |
| BseMI | GCAATG | 2 cut(s) | 270, 2818 |
| BseMII | CTCAG | 1 cut(s) | 2463 |
| BseNI | ACTGG | 4 cut(s) | 1200, 1782, 2178, 2428 |
| BseRI | GAGGAG | 1 cut(s) | 1479 |
| BseSI | GKGCMC | 2 cut(s) | 1035, 1772 |
| BseXI | GCAGC | 6 cut(s) | 163, 345, 845, 1722, 2543, 2861 |
| BseYI | CCCAGC | 1 cut(s) | 1896 |
| BsgI | GTGCAG | 3 cut(s) | 111, 1073, 2318 |
| Bsh1236I | CGCG | 1 cut(s) | 150 |
| BshFI | GGCC | 8 cut(s) | 111, 371, 703, 1668, 2303, 2307, 2580, 2858 |
| BshNI | GGYRCC | 1 cut(s) | 1767 |
| BsiHKAI | GWGCWC | 2 cut(s) | 360, 1035 |
| BsiHKCI | CYCGRG | 1 cut(s) | 566 |
| BsiSI | CCGG | 5 cut(s) | 2021, 2192, 2304, 2412, 2886 |
| BslFI | GGGAC | 3 cut(s) | 660, 696, 2208 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 776, 890, 1358, 1583, 1777, 1903 |
| BsmAI | GTCTC | 5 cut(s) | 938, 1250, 1286, 1748, 2354 |
| BsmFI | GGGAC | 3 cut(s) | 660, 696, 2208 |
| BsmI | GAATGC | 1 cut(s) | 1273 |
| BsnI | GGCC | 8 cut(s) | 111, 371, 703, 1668, 2303, 2307, 2580, 2858 |
| Bso31I | GGTCTC | 1 cut(s) | 1748 |
| BsoBI | CYCGRG | 1 cut(s) | 566 |
| Bsp119I | TTCGAA | 1 cut(s) | 2156 |
| Bsp1286I | GDGCHC | 3 cut(s) | 360, 1035, 1772 |
| Bsp19I | CCATGG | 1 cut(s) | 2704 |
| BspACI | CCGC | 4 cut(s) | 150, 644, 1803, 2613 |
| BspANI | GGCC | 8 cut(s) | 111, 371, 703, 1668, 2303, 2307, 2580, 2858 |
| BspCNI | CTCAG | 1 cut(s) | 2464 |
| BspFNI | CGCG | 1 cut(s) | 150 |
| BspHI | TCATGA | 4 cut(s) | 493, 2416, 2617, 2905 |
| BspLI | GGNNCC | 4 cut(s) | 190, 1769, 2732, 2919 |
| BspMI | ACCTGC | 1 cut(s) | 471 |
| BspOI | GCTAGC | 1 cut(s) | 2820 |
| BspPI | GGATC | 7 cut(s) | 249, 855, 1143, 1320, 1389, 2340, 2682 |
| BspT104I | TTCGAA | 1 cut(s) | 2156 |
| BspT107I | GGYRCC | 1 cut(s) | 1767 |
| BspTI | CTTAAG | 2 cut(s) | 685, 1063 |
| BspTNI | GGTCTC | 1 cut(s) | 1748 |
| BsrBI | CCGCTC | 3 cut(s) | 644, 1803, 2615 |
| BsrDI | GCAATG | 2 cut(s) | 270, 2818 |
| BsrFI | RCCGGY | 1 cut(s) | 2303 |
| BsrI | ACTGG | 4 cut(s) | 1200, 1782, 2178, 2428 |
| BssAI | RCCGGY | 1 cut(s) | 2303 |
| BssECI | CCNNGG | 8 cut(s) | 466, 567, 770, 1116, 1254, 2328, 2704, 2886 |
| BssSI | CACGAG | 1 cut(s) | 1034 |
| BssT1I | CCWWGG | 3 cut(s) | 1116, 1254, 2704 |
| Bst2BI | CACGAG | 1 cut(s) | 1034 |
| Bst2UI | CCWGG | 6 cut(s) | 468, 1096, 1878, 2329, 2354, 2738 |
| Bst4CI | ACNGT | 8 cut(s) | 130, 453, 509, 710, 949, 1073, 1721, 2545 |
| Bst6I | CTCTTC | 2 cut(s) | 1836, 2556 |
| BstAFI | CTTAAG | 2 cut(s) | 685, 1063 |
| BstBAI | YACGTR | 2 cut(s) | 307, 2433 |
| BstBI | TTCGAA | 1 cut(s) | 2156 |
| BstC8I | GCNNGC | 5 cut(s) | 1801, 2026, 2301, 2305, 2818 |
| BstDEI | CTNAG | 1 cut(s) | 2472 |
| BstDSI | CCRYGG | 1 cut(s) | 2704 |
| BstFNI | CGCG | 1 cut(s) | 150 |
| BstMAI | GTCTC | 5 cut(s) | 938, 1250, 1286, 1748, 2354 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 2817, 2855 |
| BstNI | CCWGG | 6 cut(s) | 468, 1096, 1878, 2329, 2354, 2738 |
| BstNSI | RCATGY | 5 cut(s) | 279, 330, 1480, 2028, 2321 |
| BstSCI | CCNGG | 9 cut(s) | 466, 1094, 1876, 2191, 2327, 2352, 2410, 2736, 2885 |
| BstSFI | CTRYAG | 1 cut(s) | 1901 |
| BstSLI | GKGCMC | 2 cut(s) | 1035, 1772 |
| BstUI | CGCG | 1 cut(s) | 150 |
| BstV1I | GCAGC | 6 cut(s) | 163, 345, 845, 1722, 2543, 2861 |
| BstV2I | GAAGAC | 1 cut(s) | 2009 |
| BstX2I | RGATCY | 4 cut(s) | 847, 1312, 1381, 2332 |
| BstYI | RGATCY | 4 cut(s) | 847, 1312, 1381, 2332 |
| BsuI | GTATCC | 1 cut(s) | 794 |
| BsuRI | GGCC | 8 cut(s) | 111, 371, 703, 1668, 2303, 2307, 2580, 2858 |
| BtgI | CCRYGG | 1 cut(s) | 2704 |
| BtsI | GCAGTG | 1 cut(s) | 99 |
| BtsIMutI | CAGTG | 3 cut(s) | 99, 1078, 1941 |
| BveI | ACCTGC | 1 cut(s) | 471 |
| Cac8I | GCNNGC | 5 cut(s) | 1801, 2026, 2301, 2305, 2818 |
| CciI | TCATGA | 4 cut(s) | 493, 2416, 2617, 2905 |
| Cfr10I | RCCGGY | 1 cut(s) | 2303 |
| Cfr13I | GGNCC | 2 cut(s) | 370, 2731 |
| CseI | GACGC | 2 cut(s) | 657, 1622 |
| Csp6I | GTAC | 4 cut(s) | 1140, 1292, 1405, 2894 |
| CviQI | GTAC | 4 cut(s) | 1140, 1292, 1405, 2894 |
| DdeI | CTNAG | 1 cut(s) | 2472 |
| DraI | TTTAAA | 1 cut(s) | 286 |
| DraIII | CACNNNGTG | 2 cut(s) | 250, 1721 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2260 |
| EaeI | YGGCCR | 1 cut(s) | 2578 |
| Eam1104I | CTCTTC | 2 cut(s) | 1836, 2556 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2260 |
| EarI | CTCTTC | 2 cut(s) | 1836, 2556 |
| Eco130I | CCWWGG | 3 cut(s) | 1116, 1254, 2704 |
| Eco147I | AGGCCT | 1 cut(s) | 111 |
| Eco31I | GGTCTC | 1 cut(s) | 1748 |
| Eco47I | GGWCC | 1 cut(s) | 2731 |
| Eco57I | CTGAAG | 1 cut(s) | 239 |
| Eco72I | CACGTG | 1 cut(s) | 307 |
| Eco88I | CYCGRG | 1 cut(s) | 566 |
| EcoO109I | RGGNCCY | 1 cut(s) | 370 |
| EcoRII | CCWGG | 6 cut(s) | 466, 1094, 1876, 2327, 2352, 2736 |
| EcoT14I | CCWWGG | 3 cut(s) | 1116, 1254, 2704 |
| EcoT22I | ATGCAT | 3 cut(s) | 328, 411, 2030 |
| ErhI | CCWWGG | 3 cut(s) | 1116, 1254, 2704 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 249, 281, 1731, 1763 |
| FaqI | GGGAC | 3 cut(s) | 660, 696, 2208 |
| FauI | CCCGC | 1 cut(s) | 637 |
| FauNDI | CATATG | 1 cut(s) | 765 |
| FbaI | TGATCA | 4 cut(s) | 1870, 2620, 2764, 2902 |
| Fnu4HI | GCNGC | 6 cut(s) | 177, 334, 859, 1736, 2532, 2850 |
| FseI | GGCCGGCC | 1 cut(s) | 2307 |
| Fsp4HI | GCNGC | 6 cut(s) | 177, 334, 859, 1736, 2532, 2850 |
| FspBI | CTAG | 5 cut(s) | 515, 2309, 2457, 2663, 2817 |
| GluI | GCNGC | 6 cut(s) | 177, 334, 859, 1736, 2532, 2850 |
| GsaI | CCCAGC | 1 cut(s) | 1900 |
| GsuI | CTGGAG | 2 cut(s) | 592, 678 |
| HaeIII | GGCC | 8 cut(s) | 111, 371, 703, 1668, 2303, 2307, 2580, 2858 |
| HapII | CCGG | 5 cut(s) | 2021, 2192, 2304, 2412, 2886 |
| HgaI | GACGC | 2 cut(s) | 657, 1622 |
| HindIII | AAGCTT | 1 cut(s) | 258 |
| HpaII | CCGG | 5 cut(s) | 2021, 2192, 2304, 2412, 2886 |
| HphI | GGTGA | 7 cut(s) | 302, 447, 1270, 2399, 2438, 2774, 2789 |
| Hpy166II | GTNNAC | 8 cut(s) | 445, 505, 1033, 1726, 1974, 2524, 2734, 2896 |
| Hpy8I | GTNNAC | 8 cut(s) | 445, 505, 1033, 1726, 1974, 2524, 2734, 2896 |
| HpyCH4III | ACNGT | 8 cut(s) | 130, 453, 509, 710, 949, 1073, 1721, 2545 |
| HpyCH4IV | ACGT | 5 cut(s) | 88, 306, 540, 1055, 2432 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 2817, 2855 |
| HpyF3I | CTNAG | 1 cut(s) | 2472 |
| HpySE526I | ACGT | 5 cut(s) | 88, 306, 540, 1055, 2432 |
| KroI | GCCGGC | 1 cut(s) | 2303 |
| KroNI | GCCGGC | 1 cut(s) | 2305 |
| Ksp22I | TGATCA | 4 cut(s) | 1870, 2620, 2764, 2902 |
| LmnI | GCTCC | 3 cut(s) | 559, 1543, 2659 |
| Lsp1109I | GCAGC | 6 cut(s) | 163, 345, 845, 1722, 2543, 2861 |
| LweI | GCATC | 9 cut(s) | 61, 396, 558, 789, 889, 1830, 1913, 1991, 2037 |
| MaeI | CTAG | 5 cut(s) | 515, 2309, 2457, 2663, 2817 |
| MaeII | ACGT | 5 cut(s) | 88, 306, 540, 1055, 2432 |
| MaeIII | GTNAC | 5 cut(s) | 453, 1067, 1258, 1780, 2539 |
| MbiI | CCGCTC | 3 cut(s) | 644, 1803, 2615 |
| MfeI | CAATTG | 8 cut(s) | 30, 54, 1167, 1305, 1374, 1512, 1581, 1650 |
| MflI | RGATCY | 4 cut(s) | 847, 1312, 1381, 2332 |
| MhlI | GDGCHC | 3 cut(s) | 360, 1035, 1772 |
| MlsI | TGGCCA | 1 cut(s) | 2580 |
| MluNI | TGGCCA | 1 cut(s) | 2580 |
| MlyI | GAGTC | 2 cut(s) | 928, 1052 |
| MmeI | TCCRAC | 7 cut(s) | 871, 947, 1113, 1323, 1871, 2124, 2966 |
| Mox20I | TGGCCA | 1 cut(s) | 2580 |
| Mph1103I | ATGCAT | 3 cut(s) | 328, 411, 2030 |
| MroNI | GCCGGC | 1 cut(s) | 2303 |
| MroXI | GAANNNNTTC | 2 cut(s) | 261, 1830 |
| MscI | TGGCCA | 1 cut(s) | 2580 |
| MslI | CAYNNNNRTG | 5 cut(s) | 404, 498, 554, 2622, 2772 |
| Msp20I | TGGCCA | 1 cut(s) | 2580 |
| MspA1I | CMGCKG | 2 cut(s) | 2534, 2852 |
| MspCI | CTTAAG | 2 cut(s) | 685, 1063 |
| MspI | CCGG | 5 cut(s) | 2021, 2192, 2304, 2412, 2886 |
| MspR9I | CCNGG | 9 cut(s) | 468, 1096, 1878, 2193, 2329, 2354, 2412, 2738, 2887 |
| MunI | CAATTG | 8 cut(s) | 30, 54, 1167, 1305, 1374, 1512, 1581, 1650 |
| Mva1269I | GAATGC | 1 cut(s) | 1273 |
| MvaI | CCWGG | 6 cut(s) | 468, 1096, 1878, 2329, 2354, 2738 |
| MvnI | CGCG | 1 cut(s) | 150 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 2817, 2855 |
| NaeI | GCCGGC | 1 cut(s) | 2305 |
| NciI | CCSGG | 3 cut(s) | 2193, 2412, 2887 |
| NcoI | CCATGG | 1 cut(s) | 2704 |
| NdeI | CATATG | 1 cut(s) | 765 |
| NgoMIV | GCCGGC | 1 cut(s) | 2303 |
| NheI | GCTAGC | 1 cut(s) | 2816 |
| NlaIV | GGNNCC | 4 cut(s) | 190, 1769, 2732, 2919 |
| NmuCI | GTSAC | 3 cut(s) | 453, 1258, 2539 |
| NsiI | ATGCAT | 3 cut(s) | 328, 411, 2030 |
| NspI | RCATGY | 5 cut(s) | 279, 330, 1480, 2028, 2321 |
| NspV | TTCGAA | 1 cut(s) | 2156 |
| PaeI | GCATGC | 1 cut(s) | 2028 |
| PagI | TCATGA | 4 cut(s) | 493, 2416, 2617, 2905 |
| PceI | AGGCCT | 1 cut(s) | 111 |
| PciI | ACATGT | 2 cut(s) | 1476, 2317 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 94, 2683 |
| PctI | GAATGC | 1 cut(s) | 1273 |
| PdiI | GCCGGC | 1 cut(s) | 2305 |
| PdmI | GAANNNNTTC | 2 cut(s) | 261, 1830 |
| PfoI | TCCNGGA | 3 cut(s) | 1094, 2191, 2352 |
| PkrI | GCNGC | 6 cut(s) | 178, 335, 860, 1737, 2533, 2851 |
| PleI | GAGTC | 2 cut(s) | 927, 1051 |
| PmaCI | CACGTG | 1 cut(s) | 307 |
| PmlI | CACGTG | 1 cut(s) | 307 |
| PpsI | GAGTC | 2 cut(s) | 927, 1051 |
| Ppu21I | YACGTR | 2 cut(s) | 307, 2433 |
| PscI | ACATGT | 2 cut(s) | 1476, 2317 |
| PshBI | ATTAAT | 2 cut(s) | 321, 351 |
| Psp1406I | AACGTT | 2 cut(s) | 540, 1055 |
| Psp6I | CCWGG | 6 cut(s) | 466, 1094, 1876, 2327, 2352, 2736 |
| PspCI | CACGTG | 1 cut(s) | 307 |
| PspFI | CCCAGC | 1 cut(s) | 1896 |
| PspGI | CCWGG | 6 cut(s) | 466, 1094, 1876, 2327, 2352, 2736 |
| PspN4I | GGNNCC | 4 cut(s) | 190, 1769, 2732, 2919 |
| PspPI | GGNCC | 2 cut(s) | 370, 2731 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1052, 1084 |
| PsuI | RGATCY | 4 cut(s) | 847, 1312, 1381, 2332 |
| PvuII | CAGCTG | 2 cut(s) | 2534, 2852 |
| RigI | GGCCGGCC | 1 cut(s) | 2307 |
| RsaI | GTAC | 4 cut(s) | 1141, 1293, 1406, 2895 |
| RsaNI | GTAC | 4 cut(s) | 1140, 1292, 1405, 2894 |
| RseI | CAYNNNNRTG | 5 cut(s) | 404, 498, 554, 2622, 2772 |
| SatI | GCNGC | 6 cut(s) | 177, 334, 859, 1736, 2532, 2850 |
| Sau96I | GGNCC | 2 cut(s) | 370, 2731 |
| ScaI | AGTACT | 1 cut(s) | 1293 |
| SchI | GAGTC | 2 cut(s) | 928, 1052 |
| ScrFI | CCNGG | 9 cut(s) | 468, 1096, 1878, 2193, 2329, 2354, 2412, 2738, 2887 |
| SduI | GDGCHC | 3 cut(s) | 360, 1035, 1772 |
| SfaNI | GCATC | 9 cut(s) | 61, 396, 558, 789, 889, 1830, 1913, 1991, 2037 |
| SfcI | CTRYAG | 1 cut(s) | 1901 |
| SfuI | TTCGAA | 1 cut(s) | 2156 |
| SinI | GGWCC | 1 cut(s) | 2731 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 404, 498, 554, 2622, 2772 |
| SmlI | CTYRAG | 6 cut(s) | 105, 685, 941, 1010, 1063, 1816 |
| SmoI | CTYRAG | 6 cut(s) | 105, 685, 941, 1010, 1063, 1816 |
| SphI | GCATGC | 1 cut(s) | 2028 |
| SseBI | AGGCCT | 1 cut(s) | 111 |
| SsiI | CCGC | 4 cut(s) | 150, 644, 1803, 2613 |
| SspI | AATATT | 2 cut(s) | 344, 526 |
| SspMI | CTAG | 5 cut(s) | 515, 2309, 2457, 2663, 2817 |
| StuI | AGGCCT | 1 cut(s) | 111 |
| StyD4I | CCNGG | 9 cut(s) | 466, 1094, 1876, 2191, 2327, 2352, 2410, 2736, 2885 |
| StyI | CCWWGG | 3 cut(s) | 1116, 1254, 2704 |
| TaaI | ACNGT | 8 cut(s) | 130, 453, 509, 710, 949, 1073, 1721, 2545 |
| TaiI | ACGT | 5 cut(s) | 91, 309, 543, 1058, 2435 |
| TaqI | TCGA | 8 cut(s) | 996, 1235, 1287, 2010, 2083, 2156, 2264, 2686 |
| TatI | WGTACW | 2 cut(s) | 1291, 2893 |
| TscAI | CASTG | 3 cut(s) | 99, 1078, 1941 |
| TseFI | GTSAC | 3 cut(s) | 453, 1258, 2539 |
| TseI | GCWGC | 6 cut(s) | 176, 333, 858, 1735, 2531, 2849 |
| Tsp45I | GTSAC | 3 cut(s) | 453, 1258, 2539 |
| TspGWI | ACGGA | 2 cut(s) | 1566, 1743 |
| TspRI | CASTG | 3 cut(s) | 99, 1078, 1941 |
| Vha464I | CTTAAG | 2 cut(s) | 685, 1063 |
| VneI | GTGCAC | 1 cut(s) | 1031 |
| VpaK11BI | GGWCC | 1 cut(s) | 2731 |
| VspI | ATTAAT | 2 cut(s) | 321, 351 |
| XapI | RAATTY | 6 cut(s) | 65, 865, 1015, 1223, 2036, 2439 |
| XceI | RCATGY | 5 cut(s) | 279, 330, 1480, 2028, 2321 |
| XmnI | GAANNNNTTC | 2 cut(s) | 261, 1830 |
| XspI | CTAG | 5 cut(s) | 515, 2309, 2457, 2663, 2817 |
| ZrmI | AGTACT | 1 cut(s) | 1293 |
| Zsp2I | ATGCAT | 3 cut(s) | 328, 411, 2030 |