TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 42 - 205 | 1.9e-51 | TIR domain |
| TIR_2 | PF13676 | 44 - 139 | 8.3e-15 | TIR domain |
| NB-ARC | PF00931 | 222 - 393 | 1.5e-18 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 464 - 531 | 6e-11 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 742 - 828 | 1.2e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 746 - 943 | 2.3e-16 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1772, 3507, 3513 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 10 |
| AccBSI | CCGCTC | 1 cut(s) | 2745 |
| AccI | GTMKAC | 1 cut(s) | 1598 |
| AccII | CGCG | 2 cut(s) | 2603, 2642 |
| AcoI | YGGCCR | 2 cut(s) | 57, 392 |
| AcuI | CTGAAG | 4 cut(s) | 182, 276, 1138, 2535 |
| AcvI | CACGTG | 1 cut(s) | 2660 |
| AdeI | CACNNNGTG | 1 cut(s) | 130 |
| AfaI | GTAC | 5 cut(s) | 185, 714, 1644, 2053, 3234 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 330, 2081, 2153, 2503, 2504, 2652, 2653, 3259, 3546 |
| AflIII | ACRYGT | 2 cut(s) | 3235, 3356 |
| AhlI | ACTAGT | 1 cut(s) | 346 |
| AjnI | CCWGG | 3 cut(s) | 2178, 2215, 3255 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3128, 3160 |
| Alw21I | GWGCWC | 1 cut(s) | 1152 |
| Alw26I | GTCTC | 2 cut(s) | 949, 2899 |
| Ama87I | CYCGRG | 3 cut(s) | 556, 666, 1481 |
| AoxI | GGCC | 3 cut(s) | 57, 392, 1838 |
| ApeKI | GCWGC | 7 cut(s) | 515, 530, 807, 1047, 2430, 2748, 3292 |
| AseI | ATTAAT | 1 cut(s) | 2250 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 261, 348, 2520 |
| AspA2I | CCTAGG | 1 cut(s) | 1334 |
| AspLEI | GCGC | 3 cut(s) | 1341, 2615, 2684 |
| AspS9I | GGNCC | 2 cut(s) | 1000, 3415 |
| AsuC2I | CCSGG | 1 cut(s) | 1608 |
| AsuHPI | GGTGA | 7 cut(s) | 461, 1622, 2063, 2135, 2168, 2590, 3469 |
| AsuII | TTCGAA | 1 cut(s) | 2834 |
| AvaI | CYCGRG | 3 cut(s) | 556, 666, 1481 |
| AvaII | GGWCC | 2 cut(s) | 1000, 3415 |
| AvrII | CCTAGG | 1 cut(s) | 1334 |
| BaeGI | GKGCMC | 1 cut(s) | 2659 |
| BalI | TGGCCA | 1 cut(s) | 59 |
| BamHI | GGATCC | 3 cut(s) | 412, 2084, 2156 |
| BanII | GRGCYC | 3 cut(s) | 1152, 1608, 2513 |
| BbrPI | CACGTG | 1 cut(s) | 2660 |
| BbsI | GAAGAC | 4 cut(s) | 295, 758, 2988, 3447 |
| Bbv12I | GWGCWC | 1 cut(s) | 1152 |
| BbvI | GCAGC | 7 cut(s) | 527, 542, 794, 1059, 2442, 2735, 3279 |
| BccI | CCATC | 9 cut(s) | 68, 424, 501, 794, 1307, 1564, 1687, 2878, 2923 |
| BceAI | ACGGC | 1 cut(s) | 1060 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 299, 333, 371, 405, 1804, 1838, 2740, 2774 |
| BciT130I | CCWGG | 3 cut(s) | 2180, 2217, 3257 |
| BciVI | GTATCC | 1 cut(s) | 148 |
| BclI | TGATCA | 1 cut(s) | 3166 |
| BcnI | CCSGG | 1 cut(s) | 1608 |
| BcoDI | GTCTC | 2 cut(s) | 949, 2899 |
| BcuI | ACTAGT | 1 cut(s) | 346 |
| BfaI | CTAG | 7 cut(s) | 347, 659, 882, 1127, 1335, 1889, 1991 |
| BfmI | CTRYAG | 3 cut(s) | 1215, 1599, 2749 |
| BfoI | RGCGCY | 1 cut(s) | 2685 |
| BfuI | GTATCC | 1 cut(s) | 148 |
| BglII | AGATCT | 2 cut(s) | 49, 2419 |
| BlnI | CCTAGG | 1 cut(s) | 1334 |
| Bme1390I | CCNGG | 4 cut(s) | 1608, 2180, 2217, 3257 |
| Bme18I | GGWCC | 2 cut(s) | 1000, 3415 |
| BmeT110I | CYCGRG | 3 cut(s) | 556, 666, 1481 |
| BmgT120I | GGNCC | 2 cut(s) | 1000, 3415 |
| BmiI | GGNNCC | 6 cut(s) | 414, 2086, 2158, 2571, 3048, 3416 |
| BmrFI | CCNGG | 4 cut(s) | 1608, 2180, 2217, 3257 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2992 |
| BpiI | GAAGAC | 4 cut(s) | 295, 758, 2988, 3447 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 502, 534 |
| BpmI | CTGGAG | 4 cut(s) | 2251, 2294, 2923, 3239 |
| Bpu14I | TTCGAA | 1 cut(s) | 2834 |
| BpuEI | CTTGAG | 3 cut(s) | 1166, 1218, 1747 |
| BpuMI | CCSGG | 1 cut(s) | 1608 |
| BsaAI | YACGTR | 3 cut(s) | 2660, 3236, 3357 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1809 |
| BsaJI | CCNNGG | 2 cut(s) | 358, 1334 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 840, 870, 2896, 2926 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 330, 2081, 2153, 2503, 2504, 2652, 2653, 3259, 3546 |
| Bse1I | ACTGG | 8 cut(s) | 191, 1003, 2112, 2234, 2341, 3029, 3480, 3588 |
| Bse3DI | GCAATG | 4 cut(s) | 1407, 2260, 2348, 3341 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1809 |
| BseBI | CCWGG | 3 cut(s) | 2180, 2217, 3257 |
| BseDI | CCNNGG | 2 cut(s) | 358, 1334 |
| BseJI | GATNNNNATC | 1 cut(s) | 1809 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 330, 2081, 2153, 2503, 2504, 2652, 2653, 3259, 3546 |
| BseMI | GCAATG | 4 cut(s) | 1407, 2260, 2348, 3341 |
| BseMII | CTCAG | 3 cut(s) | 60, 487, 3014 |
| BseNI | ACTGG | 8 cut(s) | 191, 1003, 2112, 2234, 2341, 3029, 3480, 3588 |
| BseRI | GAGGAG | 2 cut(s) | 255, 2150 |
| BseSI | GKGCMC | 1 cut(s) | 2659 |
| BseXI | GCAGC | 7 cut(s) | 527, 542, 794, 1059, 2442, 2735, 3279 |
| BseYI | CCCAGC | 1 cut(s) | 1019 |
| BsgI | GTGCAG | 1 cut(s) | 3278 |
| Bsh1236I | CGCG | 2 cut(s) | 2603, 2642 |
| BshFI | GGCC | 3 cut(s) | 59, 394, 1840 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1152 |
| BsiHKCI | CYCGRG | 3 cut(s) | 556, 666, 1481 |
| BsiSI | CCGG | 1 cut(s) | 1608 |
| BslFI | GGGAC | 3 cut(s) | 2629, 3522, 3539 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 330, 2081, 2153, 2503, 2504, 2652, 2653, 3259, 3546 |
| BsmAI | GTCTC | 2 cut(s) | 949, 2899 |
| BsmFI | GGGAC | 3 cut(s) | 2629, 3522, 3539 |
| BsmI | GAATGC | 7 cut(s) | 1166, 1239, 1341, 1654, 2274, 2708, 2787 |
| BsnI | GGCC | 3 cut(s) | 59, 394, 1840 |
| BsoBI | CYCGRG | 3 cut(s) | 556, 666, 1481 |
| Bsp119I | TTCGAA | 1 cut(s) | 2834 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1152, 1608, 2513, 2659 |
| Bsp1407I | TGTACA | 1 cut(s) | 1642 |
| BspANI | GGCC | 3 cut(s) | 59, 394, 1840 |
| BspCNI | CTCAG | 3 cut(s) | 59, 486, 3013 |
| BspFNI | CGCG | 2 cut(s) | 2603, 2642 |
| BspHI | TCATGA | 3 cut(s) | 922, 1120, 1135 |
| BspLI | GGNNCC | 6 cut(s) | 414, 2086, 2158, 2571, 3048, 3416 |
| BspMAI | CTGCAG | 1 cut(s) | 2753 |
| BspQI | GCTCTTC | 1 cut(s) | 1157 |
| BspT104I | TTCGAA | 1 cut(s) | 2834 |
| BsrBI | CCGCTC | 1 cut(s) | 2745 |
| BsrDI | GCAATG | 4 cut(s) | 1407, 2260, 2348, 3341 |
| BsrGI | TGTACA | 1 cut(s) | 1642 |
| BsrI | ACTGG | 8 cut(s) | 191, 1003, 2112, 2234, 2341, 3029, 3480, 3588 |
| BssECI | CCNNGG | 2 cut(s) | 358, 1334 |
| BssT1I | CCWWGG | 2 cut(s) | 358, 1334 |
| Bst2UI | CCWGG | 3 cut(s) | 2180, 2217, 3257 |
| Bst4CI | ACNGT | 7 cut(s) | 1206, 1219, 1387, 1626, 1788, 1847, 2388 |
| Bst6I | CTCTTC | 5 cut(s) | 94, 591, 1157, 1560, 2984 |
| BstAUI | TGTACA | 1 cut(s) | 1642 |
| BstBAI | YACGTR | 3 cut(s) | 2660, 3236, 3357 |
| BstBI | TTCGAA | 1 cut(s) | 2834 |
| BstC8I | GCNNGC | 3 cut(s) | 29, 1302, 1550 |
| BstDEI | CTNAG | 7 cut(s) | 46, 137, 473, 521, 2026, 2042, 3000 |
| BstFNI | CGCG | 2 cut(s) | 2603, 2642 |
| BstH2I | RGCGCY | 1 cut(s) | 2685 |
| BstHHI | GCGC | 3 cut(s) | 1341, 2615, 2684 |
| BstMAI | GTCTC | 2 cut(s) | 949, 2899 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1612, 2793, 3343 |
| BstNI | CCWGG | 3 cut(s) | 2180, 2217, 3257 |
| BstNSI | RCATGY | 1 cut(s) | 1552 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2992 |
| BstSCI | CCNGG | 4 cut(s) | 1606, 2178, 2215, 3255 |
| BstSFI | CTRYAG | 3 cut(s) | 1215, 1599, 2749 |
| BstSLI | GKGCMC | 1 cut(s) | 2659 |
| BstUI | CGCG | 2 cut(s) | 2603, 2642 |
| BstV1I | GCAGC | 7 cut(s) | 527, 542, 794, 1059, 2442, 2735, 3279 |
| BstV2I | GAAGAC | 4 cut(s) | 295, 758, 2988, 3447 |
| BstX2I | RGATCY | 9 cut(s) | 49, 412, 2038, 2084, 2110, 2156, 2182, 2234, 2419 |
| BstYI | RGATCY | 9 cut(s) | 49, 412, 2038, 2084, 2110, 2156, 2182, 2234, 2419 |
| BsuI | GTATCC | 1 cut(s) | 148 |
| BsuRI | GGCC | 3 cut(s) | 59, 394, 1840 |
| BtsIMutI | CAGTG | 3 cut(s) | 1850, 2334, 3487 |
| Cac8I | GCNNGC | 3 cut(s) | 29, 1302, 1550 |
| CciI | TCATGA | 3 cut(s) | 922, 1120, 1135 |
| CfoI | GCGC | 3 cut(s) | 1341, 2615, 2684 |
| Cfr13I | GGNCC | 2 cut(s) | 1000, 3415 |
| CseI | GACGC | 4 cut(s) | 2312, 2631, 2978, 3326 |
| Csp6I | GTAC | 5 cut(s) | 184, 713, 1643, 2052, 3233 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1233, 1268, 3391, 3426 |
| CviQI | GTAC | 5 cut(s) | 184, 713, 1643, 2052, 3233 |
| DdeI | CTNAG | 7 cut(s) | 46, 137, 473, 521, 2026, 2042, 3000 |
| DraI | TTTAAA | 2 cut(s) | 1321, 2061 |
| DraIII | CACNNNGTG | 1 cut(s) | 130 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 10 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 10 |
| EaeI | YGGCCR | 2 cut(s) | 57, 392 |
| Eam1104I | CTCTTC | 5 cut(s) | 94, 591, 1157, 1560, 2984 |
| EarI | CTCTTC | 5 cut(s) | 94, 591, 1157, 1560, 2984 |
| EciI | GGCGGA | 2 cut(s) | 717, 756 |
| Ecl136II | GAGCTC | 1 cut(s) | 1150 |
| Eco130I | CCWWGG | 2 cut(s) | 358, 1334 |
| Eco24I | GRGCYC | 3 cut(s) | 1152, 1608, 2513 |
| Eco32I | GATATC | 1 cut(s) | 2369 |
| Eco47I | GGWCC | 2 cut(s) | 1000, 3415 |
| Eco53kI | GAGCTC | 1 cut(s) | 1150 |
| Eco57I | CTGAAG | 4 cut(s) | 182, 276, 1138, 2535 |
| Eco72I | CACGTG | 1 cut(s) | 2660 |
| Eco88I | CYCGRG | 3 cut(s) | 556, 666, 1481 |
| EcoICRI | GAGCTC | 1 cut(s) | 1150 |
| EcoRII | CCWGG | 3 cut(s) | 2178, 2215, 3255 |
| EcoRV | GATATC | 1 cut(s) | 2369 |
| EcoT14I | CCWWGG | 2 cut(s) | 358, 1334 |
| EcoT22I | ATGCAT | 4 cut(s) | 322, 1168, 1554, 2708 |
| EcoT38I | GRGCYC | 3 cut(s) | 1152, 1608, 2513 |
| ErhI | CCWWGG | 2 cut(s) | 358, 1334 |
| FaqI | GGGAC | 3 cut(s) | 2629, 3522, 3539 |
| FauI | CCCGC | 1 cut(s) | 554 |
| FbaI | TGATCA | 1 cut(s) | 3166 |
| FblI | GTMKAC | 1 cut(s) | 1598 |
| FriOI | GRGCYC | 3 cut(s) | 1152, 1608, 2513 |
| FspBI | CTAG | 7 cut(s) | 347, 659, 882, 1127, 1335, 1889, 1991 |
| GlaI | GCGC | 3 cut(s) | 1340, 2614, 2683 |
| GsaI | CCCAGC | 1 cut(s) | 1023 |
| GsuI | CTGGAG | 4 cut(s) | 2251, 2294, 2923, 3239 |
| HaeII | RGCGCY | 1 cut(s) | 2685 |
| HaeIII | GGCC | 3 cut(s) | 59, 394, 1840 |
| HapII | CCGG | 1 cut(s) | 1608 |
| HgaI | GACGC | 4 cut(s) | 2312, 2631, 2978, 3326 |
| HhaI | GCGC | 3 cut(s) | 1341, 2615, 2684 |
| Hin6I | GCGC | 3 cut(s) | 1339, 2613, 2682 |
| HinP1I | GCGC | 3 cut(s) | 1339, 2613, 2682 |
| HincII | GTYRAC | 3 cut(s) | 859, 982, 2227 |
| HindII | GTYRAC | 3 cut(s) | 859, 982, 2227 |
| HindIII | AAGCTT | 2 cut(s) | 2096, 2168 |
| HpaII | CCGG | 1 cut(s) | 1608 |
| HphI | GGTGA | 7 cut(s) | 461, 1622, 2063, 2135, 2168, 2590, 3469 |
| Hpy99I | CGWCG | 1 cut(s) | 114 |
| HpyCH4III | ACNGT | 7 cut(s) | 1206, 1219, 1387, 1626, 1788, 1847, 2388 |
| HpyCH4IV | ACGT | 7 cut(s) | 423, 1776, 1924, 2659, 3235, 3356, 3444 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1612, 2793, 3343 |
| HpyF3I | CTNAG | 7 cut(s) | 46, 137, 473, 521, 2026, 2042, 3000 |
| HpySE526I | ACGT | 7 cut(s) | 423, 1776, 1924, 2659, 3235, 3356, 3444 |
| HspAI | GCGC | 3 cut(s) | 1339, 2613, 2682 |
| Ksp22I | TGATCA | 1 cut(s) | 3166 |
| LguI | GCTCTTC | 1 cut(s) | 1157 |
| LmnI | GCTCC | 4 cut(s) | 167, 838, 2569, 2854 |
| Lsp1109I | GCAGC | 7 cut(s) | 527, 542, 794, 1059, 2442, 2735, 3279 |
| MaeI | CTAG | 7 cut(s) | 347, 659, 882, 1127, 1335, 1889, 1991 |
| MaeII | ACGT | 7 cut(s) | 423, 1776, 1924, 2659, 3235, 3356, 3444 |
| MaeIII | GTNAC | 3 cut(s) | 1040, 1466, 1827 |
| MbiI | CCGCTC | 1 cut(s) | 2745 |
| MfeI | CAATTG | 3 cut(s) | 65, 759, 783 |
| MflI | RGATCY | 9 cut(s) | 49, 412, 2038, 2084, 2110, 2156, 2182, 2234, 2419 |
| MhlI | GDGCHC | 4 cut(s) | 1152, 1608, 2513, 2659 |
| MlsI | TGGCCA | 1 cut(s) | 59 |
| MluNI | TGGCCA | 1 cut(s) | 59 |
| MlyI | GAGTC | 6 cut(s) | 656, 1604, 2901, 2982, 3284, 3372 |
| MmeI | TCCRAC | 5 cut(s) | 1409, 1542, 2062, 2134, 2549 |
| Mox20I | TGGCCA | 1 cut(s) | 59 |
| Mph1103I | ATGCAT | 4 cut(s) | 322, 1168, 1554, 2708 |
| MroXI | GAANNNNTTC | 3 cut(s) | 261, 348, 2520 |
| MscI | TGGCCA | 1 cut(s) | 59 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1273, 1638, 3225 |
| Msp20I | TGGCCA | 1 cut(s) | 59 |
| MspA1I | CMGCKG | 1 cut(s) | 3063 |
| MspI | CCGG | 1 cut(s) | 1608 |
| MspR9I | CCNGG | 4 cut(s) | 1608, 2180, 2217, 3257 |
| MunI | CAATTG | 3 cut(s) | 65, 759, 783 |
| Mva1269I | GAATGC | 7 cut(s) | 1166, 1239, 1341, 1654, 2274, 2708, 2787 |
| MvaI | CCWGG | 3 cut(s) | 2180, 2217, 3257 |
| MvnI | CGCG | 2 cut(s) | 2603, 2642 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1612, 2793, 3343 |
| NciI | CCSGG | 1 cut(s) | 1608 |
| NlaIV | GGNNCC | 6 cut(s) | 414, 2086, 2158, 2571, 3048, 3416 |
| NmuCI | GTSAC | 2 cut(s) | 1040, 1466 |
| NsiI | ATGCAT | 4 cut(s) | 322, 1168, 1554, 2708 |
| NspI | RCATGY | 1 cut(s) | 1552 |
| NspV | TTCGAA | 1 cut(s) | 2834 |
| PaeI | GCATGC | 1 cut(s) | 1552 |
| PagI | TCATGA | 3 cut(s) | 922, 1120, 1135 |
| PciSI | GCTCTTC | 1 cut(s) | 1157 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 306 |
| PctI | GAATGC | 7 cut(s) | 1166, 1239, 1341, 1654, 2274, 2708, 2787 |
| PdmI | GAANNNNTTC | 3 cut(s) | 261, 348, 2520 |
| PflFI | GACNNNGTC | 1 cut(s) | 2910 |
| PleI | GAGTC | 6 cut(s) | 656, 1603, 2901, 2982, 3283, 3371 |
| PmaCI | CACGTG | 1 cut(s) | 2660 |
| PmlI | CACGTG | 1 cut(s) | 2660 |
| PpsI | GAGTC | 6 cut(s) | 656, 1603, 2901, 2982, 3283, 3371 |
| Ppu21I | YACGTR | 3 cut(s) | 2660, 3236, 3357 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2992 |
| PshBI | ATTAAT | 1 cut(s) | 2250 |
| PsiI | TTATAA | 3 cut(s) | 1772, 3507, 3513 |
| Psp124BI | GAGCTC | 1 cut(s) | 1152 |
| Psp6I | CCWGG | 3 cut(s) | 2178, 2215, 3255 |
| PspCI | CACGTG | 1 cut(s) | 2660 |
| PspFI | CCCAGC | 1 cut(s) | 1019 |
| PspGI | CCWGG | 3 cut(s) | 2178, 2215, 3255 |
| PspN4I | GGNNCC | 6 cut(s) | 414, 2086, 2158, 2571, 3048, 3416 |
| PspPI | GGNCC | 2 cut(s) | 1000, 3415 |
| PstI | CTGCAG | 1 cut(s) | 2753 |
| PsuI | RGATCY | 9 cut(s) | 49, 412, 2038, 2084, 2110, 2156, 2182, 2234, 2419 |
| PsyI | GACNNNGTC | 1 cut(s) | 2910 |
| PvuII | CAGCTG | 1 cut(s) | 3063 |
| RsaI | GTAC | 5 cut(s) | 185, 714, 1644, 2053, 3234 |
| RsaNI | GTAC | 5 cut(s) | 184, 713, 1643, 2052, 3233 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1273, 1638, 3225 |
| SacI | GAGCTC | 1 cut(s) | 1152 |
| SapI | GCTCTTC | 1 cut(s) | 1157 |
| Sau96I | GGNCC | 2 cut(s) | 1000, 3415 |
| SchI | GAGTC | 6 cut(s) | 656, 1604, 2901, 2982, 3284, 3372 |
| ScrFI | CCNGG | 4 cut(s) | 1608, 2180, 2217, 3257 |
| SduI | GDGCHC | 4 cut(s) | 1152, 1608, 2513, 2659 |
| SfcI | CTRYAG | 3 cut(s) | 1215, 1599, 2749 |
| SfuI | TTCGAA | 1 cut(s) | 2834 |
| SinI | GGWCC | 2 cut(s) | 1000, 3415 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1273, 1638, 3225 |
| SmlI | CTYRAG | 3 cut(s) | 1145, 1233, 1726 |
| SmoI | CTYRAG | 3 cut(s) | 1145, 1233, 1726 |
| SpeI | ACTAGT | 1 cut(s) | 346 |
| SphI | GCATGC | 1 cut(s) | 1552 |
| SspI | AATATT | 1 cut(s) | 871 |
| SspMI | CTAG | 7 cut(s) | 347, 659, 882, 1127, 1335, 1889, 1991 |
| SstI | GAGCTC | 1 cut(s) | 1152 |
| StyD4I | CCNGG | 4 cut(s) | 1606, 2178, 2215, 3255 |
| StyI | CCWWGG | 2 cut(s) | 358, 1334 |
| TaaI | ACNGT | 7 cut(s) | 1206, 1219, 1387, 1626, 1788, 1847, 2388 |
| TaiI | ACGT | 7 cut(s) | 426, 1779, 1927, 2662, 3238, 3359, 3447 |
| TaqI | TCGA | 7 cut(s) | 905, 1404, 1503, 2198, 2834, 2986, 3361 |
| TatI | WGTACW | 2 cut(s) | 183, 1642 |
| TauI | GCSGC | 4 cut(s) | 1917, 2575, 2748, 2796 |
| TscAI | CASTG | 3 cut(s) | 1857, 2341, 3487 |
| TseFI | GTSAC | 2 cut(s) | 1040, 1466 |
| TseI | GCWGC | 7 cut(s) | 515, 530, 807, 1047, 2430, 2748, 3292 |
| Tsp45I | GTSAC | 2 cut(s) | 1040, 1466 |
| TspGWI | ACGGA | 2 cut(s) | 2900, 3559 |
| TspRI | CASTG | 3 cut(s) | 1857, 2341, 3487 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2910 |
| VpaK11BI | GGWCC | 2 cut(s) | 1000, 3415 |
| VspI | ATTAAT | 1 cut(s) | 2250 |
| XceI | RCATGY | 1 cut(s) | 1552 |
| XmaJI | CCTAGG | 1 cut(s) | 1334 |
| XmiI | GTMKAC | 1 cut(s) | 1598 |
| XmnI | GAANNNNTTC | 3 cut(s) | 261, 348, 2520 |
| XspI | CTAG | 7 cut(s) | 347, 659, 882, 1127, 1335, 1889, 1991 |
| Zsp2I | ATGCAT | 4 cut(s) | 322, 1168, 1554, 2708 |