TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 29 - 193 | 4.2e-52 | TIR domain |
| TIR_2 | PF13676 | 31 - 127 | 1.9e-14 | TIR domain |
| NB-ARC | PF00931 | 210 - 380 | 2.5e-18 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 452 - 523 | 9.9e-14 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 705 - 798 | 7.8e-09 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 713 - 798 | 3.3e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_13 | PF23286 | 845 - 940 | 2.1e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1745 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 455 |
| Acc65I | GGTACC | 1 cut(s) | 393 |
| AccB1I | GGYRCC | 1 cut(s) | 393 |
| AccBSI | CCGCTC | 1 cut(s) | 2335 |
| AccI | GTMKAC | 1 cut(s) | 2079 |
| AciI | CCGC | 5 cut(s) | 705, 2333, 3184, 3302, 3375 |
| AclI | AACGTT | 1 cut(s) | 1042 |
| AclWI | GGATC | 6 cut(s) | 313, 326, 371, 384, 867, 1340 |
| AcoI | YGGCCR | 1 cut(s) | 356 |
| AcuI | CTGAAG | 3 cut(s) | 579, 2273, 2559 |
| AcyI | GRCGYC | 1 cut(s) | 3298 |
| AfaI | GTAC | 8 cut(s) | 390, 395, 550, 636, 804, 1188, 1470, 3177 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 390, 812, 1969, 2002, 2057, 3243 |
| AflII | CTTAAG | 3 cut(s) | 1913, 2017, 2108 |
| AhlI | ACTAGT | 1 cut(s) | 1861 |
| AjnI | CCWGG | 2 cut(s) | 2487, 3384 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3095, 3127 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 660, 692, 804, 836 |
| Alw21I | GWGCWC | 1 cut(s) | 1872 |
| Alw26I | GTCTC | 3 cut(s) | 633, 842, 2860 |
| AlwI | GGATC | 6 cut(s) | 313, 326, 371, 384, 867, 1340 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2582 |
| AoxI | GGCC | 9 cut(s) | 136, 356, 814, 1201, 1482, 1811, 3234, 3527, 3547 |
| ApeKI | GCWGC | 9 cut(s) | 494, 1011, 1268, 2166, 2842, 3128, 3247, 3304, 3372 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3444, 3476 |
| AseI | ATTAAT | 2 cut(s) | 1752, 3168 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1130, 1362, 1554 |
| Asp718I | GGTACC | 1 cut(s) | 393 |
| AspS9I | GGNCC | 6 cut(s) | 1483, 1812, 1972, 3235, 3358, 3527 |
| AsuC2I | CCSGG | 1 cut(s) | 1815 |
| AsuHPI | GGTGA | 5 cut(s) | 425, 1560, 2431, 2936, 3374 |
| AsuII | TTCGAA | 1 cut(s) | 3156 |
| AsuNHI | GCTAGC | 1 cut(s) | 2663 |
| AvaII | GGWCC | 2 cut(s) | 1972, 3358 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1170, 1203 |
| BalI | TGGCCA | 1 cut(s) | 358 |
| BamHI | GGATCC | 2 cut(s) | 318, 376 |
| BanI | GGYRCC | 1 cut(s) | 393 |
| BanII | GRGCYC | 1 cut(s) | 1872 |
| BauI | CACGAG | 1 cut(s) | 1607 |
| BbsI | GAAGAC | 1 cut(s) | 2648 |
| Bbv12I | GWGCWC | 1 cut(s) | 1872 |
| BbvI | GCAGC | 9 cut(s) | 506, 1023, 1255, 2153, 2854, 3115, 3234, 3291, 3359 |
| BccI | CCATC | 5 cut(s) | 1846, 2200, 2252, 2507, 2915 |
| BceAI | ACGGC | 3 cut(s) | 1216, 2485, 3514 |
| BciT130I | CCWGG | 2 cut(s) | 2489, 3386 |
| BciVI | GTATCC | 2 cut(s) | 109, 621 |
| BclI | TGATCA | 1 cut(s) | 2926 |
| BcnI | CCSGG | 1 cut(s) | 1815 |
| BcoDI | GTCTC | 3 cut(s) | 633, 842, 2860 |
| BcuI | ACTAGT | 1 cut(s) | 1861 |
| BfaI | CTAG | 6 cut(s) | 818, 1421, 1430, 1862, 2235, 2664 |
| BfmI | CTRYAG | 2 cut(s) | 258, 1452 |
| BfrI | CTTAAG | 3 cut(s) | 1913, 2017, 2108 |
| BfuI | GTATCC | 2 cut(s) | 109, 621 |
| BglII | AGATCT | 1 cut(s) | 2356 |
| BlpI | GCTNAGC | 1 cut(s) | 2336 |
| BmcAI | AGTACT | 2 cut(s) | 1470, 3177 |
| Bme1390I | CCNGG | 3 cut(s) | 1815, 2489, 3386 |
| Bme18I | GGWCC | 2 cut(s) | 1972, 3358 |
| BmgT120I | GGNCC | 6 cut(s) | 1483, 1812, 1972, 3235, 3358, 3527 |
| BmiI | GGNNCC | 5 cut(s) | 320, 378, 395, 1974, 3360 |
| BmrFI | CCNGG | 3 cut(s) | 1815, 2489, 3386 |
| BmtI | GCTAGC | 1 cut(s) | 2667 |
| BpiI | GAAGAC | 1 cut(s) | 2648 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 466, 498 |
| BpmI | CTGGAG | 6 cut(s) | 493, 1005, 1553, 1788, 2753, 2884 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2336 |
| Bpu14I | TTCGAA | 1 cut(s) | 3156 |
| BpuEI | CTTGAG | 6 cut(s) | 668, 1720, 2722, 2872, 3499, 3524 |
| BpuMI | CCSGG | 1 cut(s) | 1815 |
| Bsa29I | ATCGAT | 1 cut(s) | 3202 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2925 |
| BsaHI | GRCGYC | 1 cut(s) | 3298 |
| BsaJI | CCNNGG | 1 cut(s) | 1083 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 804, 834, 2857, 2887 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 390, 812, 1969, 2002, 2057, 3243 |
| Bse1I | ACTGG | 4 cut(s) | 359, 967, 2397, 3183 |
| Bse3DI | GCAATG | 1 cut(s) | 1371 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2925 |
| BseBI | CCWGG | 2 cut(s) | 2489, 3386 |
| BseCI | ATCGAT | 1 cut(s) | 3202 |
| BseDI | CCNNGG | 1 cut(s) | 1083 |
| BseGI | GGATG | 7 cut(s) | 310, 496, 1618, 1838, 2047, 2211, 2570 |
| BseJI | GATNNNNATC | 1 cut(s) | 2925 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 390, 812, 1969, 2002, 2057, 3243 |
| BseMI | GCAATG | 1 cut(s) | 1371 |
| BseMII | CTCAG | 3 cut(s) | 2031, 2350, 3451 |
| BseNI | ACTGG | 4 cut(s) | 359, 967, 2397, 3183 |
| BseRI | GAGGAG | 1 cut(s) | 54 |
| BseXI | GCAGC | 9 cut(s) | 506, 1023, 1255, 2153, 2854, 3115, 3234, 3291, 3359 |
| BseYI | CCCAGC | 1 cut(s) | 1822 |
| BsgI | GTGCAG | 3 cut(s) | 207, 457, 2906 |
| BshFI | GGCC | 9 cut(s) | 138, 358, 816, 1203, 1484, 1813, 3236, 3529, 3549 |
| BshNI | GGYRCC | 1 cut(s) | 393 |
| BshVI | ATCGAT | 1 cut(s) | 3202 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1872 |
| BsiSI | CCGG | 1 cut(s) | 1815 |
| BslFI | GGGAC | 3 cut(s) | 1923, 1958, 3344 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 390, 812, 1969, 2002, 2057, 3243 |
| BsmAI | GTCTC | 3 cut(s) | 633, 842, 2860 |
| BsmFI | GGGAC | 3 cut(s) | 1923, 1958, 3344 |
| BsmI | GAATGC | 2 cut(s) | 1132, 2981 |
| BsnI | GGCC | 9 cut(s) | 138, 358, 816, 1203, 1484, 1813, 3236, 3529, 3549 |
| Bsp119I | TTCGAA | 1 cut(s) | 3156 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1872 |
| Bsp1407I | TGTACA | 1 cut(s) | 634 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2336 |
| BspACI | CCGC | 5 cut(s) | 705, 2333, 3184, 3302, 3375 |
| BspANI | GGCC | 9 cut(s) | 138, 358, 816, 1203, 1484, 1813, 3236, 3529, 3549 |
| BspCNI | CTCAG | 3 cut(s) | 2032, 2349, 3450 |
| BspDI | ATCGAT | 1 cut(s) | 3202 |
| BspHI | TCATGA | 2 cut(s) | 3007, 3220 |
| BspLI | GGNNCC | 5 cut(s) | 320, 378, 395, 1974, 3360 |
| BspOI | GCTAGC | 1 cut(s) | 2667 |
| BspPI | GGATC | 6 cut(s) | 313, 326, 371, 384, 867, 1340 |
| BspQI | GCTCTTC | 1 cut(s) | 186 |
| BspT104I | TTCGAA | 1 cut(s) | 3156 |
| BspT107I | GGYRCC | 1 cut(s) | 393 |
| BspTI | CTTAAG | 3 cut(s) | 1913, 2017, 2108 |
| BsrBI | CCGCTC | 1 cut(s) | 2335 |
| BsrDI | GCAATG | 1 cut(s) | 1371 |
| BsrGI | TGTACA | 1 cut(s) | 634 |
| BsrI | ACTGG | 4 cut(s) | 359, 967, 2397, 3183 |
| BssECI | CCNNGG | 1 cut(s) | 1083 |
| BssNI | GRCGYC | 1 cut(s) | 3298 |
| BssSI | CACGAG | 1 cut(s) | 1607 |
| BssT1I | CCWWGG | 1 cut(s) | 1083 |
| Bst2BI | CACGAG | 1 cut(s) | 1607 |
| Bst2UI | CCWGG | 2 cut(s) | 2489, 3386 |
| Bst4CI | ACNGT | 5 cut(s) | 393, 1886, 2429, 2757, 3060 |
| Bst6I | CTCTTC | 5 cut(s) | 64, 186, 555, 2285, 2971 |
| BstACI | GRCGYC | 1 cut(s) | 3298 |
| BstAFI | CTTAAG | 3 cut(s) | 1913, 2017, 2108 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1528 |
| BstAUI | TGTACA | 1 cut(s) | 634 |
| BstBI | TTCGAA | 1 cut(s) | 3156 |
| BstC8I | GCNNGC | 5 cut(s) | 1266, 1416, 1582, 1759, 2665 |
| BstDEI | CTNAG | 9 cut(s) | 197, 485, 520, 778, 937, 2040, 2336, 2360, 3437 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1967 |
| BstF5I | GGATG | 7 cut(s) | 310, 496, 1618, 1838, 2047, 2211, 2570 |
| BstMAI | GTCTC | 3 cut(s) | 633, 842, 2860 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 711, 1424, 1528, 1590, 1876, 3233, 3304 |
| BstNI | CCWGG | 2 cut(s) | 2489, 3386 |
| BstNSI | RCATGY | 2 cut(s) | 1268, 1380 |
| BstSCI | CCNGG | 3 cut(s) | 1813, 2487, 3384 |
| BstSFI | CTRYAG | 2 cut(s) | 258, 1452 |
| BstV1I | GCAGC | 9 cut(s) | 506, 1023, 1255, 2153, 2854, 3115, 3234, 3291, 3359 |
| BstV2I | GAAGAC | 1 cut(s) | 2648 |
| BstX2I | RGATCY | 4 cut(s) | 318, 376, 1345, 2356 |
| BstYI | RGATCY | 4 cut(s) | 318, 376, 1345, 2356 |
| Bsu15I | ATCGAT | 1 cut(s) | 3202 |
| BsuI | GTATCC | 2 cut(s) | 109, 621 |
| BsuRI | GGCC | 9 cut(s) | 138, 358, 816, 1203, 1484, 1813, 3236, 3529, 3549 |
| BsuTUI | ATCGAT | 1 cut(s) | 3202 |
| BtsCI | GGATG | 7 cut(s) | 310, 496, 1618, 1838, 2047, 2211, 2570 |
| BtsIMutI | CAGTG | 1 cut(s) | 366 |
| Cac8I | GCNNGC | 5 cut(s) | 1266, 1416, 1582, 1759, 2665 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2582 |
| CciI | TCATGA | 2 cut(s) | 3007, 3220 |
| Cfr13I | GGNCC | 6 cut(s) | 1483, 1812, 1972, 3235, 3358, 3527 |
| ClaI | ATCGAT | 1 cut(s) | 3202 |
| CseI | GACGC | 3 cut(s) | 2605, 3269, 3287 |
| CsiI | ACCWGGT | 1 cut(s) | 3384 |
| Csp6I | GTAC | 8 cut(s) | 389, 394, 549, 635, 803, 1187, 1469, 3176 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2730, 2765 |
| CviQI | GTAC | 8 cut(s) | 389, 394, 549, 635, 803, 1187, 1469, 3176 |
| DdeI | CTNAG | 9 cut(s) | 197, 485, 520, 778, 937, 2040, 2336, 2360, 3437 |
| DraI | TTTAAA | 2 cut(s) | 597, 1717 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 455 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 455 |
| EaeI | YGGCCR | 1 cut(s) | 356 |
| Eam1104I | CTCTTC | 5 cut(s) | 64, 186, 555, 2285, 2971 |
| EarI | CTCTTC | 5 cut(s) | 64, 186, 555, 2285, 2971 |
| Ecl136II | GAGCTC | 1 cut(s) | 1870 |
| Eco130I | CCWWGG | 1 cut(s) | 1083 |
| Eco147I | AGGCCT | 1 cut(s) | 816 |
| Eco24I | GRGCYC | 1 cut(s) | 1872 |
| Eco47I | GGWCC | 2 cut(s) | 1972, 3358 |
| Eco53kI | GAGCTC | 1 cut(s) | 1870 |
| Eco57I | CTGAAG | 3 cut(s) | 579, 2273, 2559 |
| EcoICRI | GAGCTC | 1 cut(s) | 1870 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1967 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1483, 1972 |
| EcoRII | CCWGG | 2 cut(s) | 2487, 3384 |
| EcoT14I | CCWWGG | 1 cut(s) | 1083 |
| EcoT22I | ATGCAT | 3 cut(s) | 345, 1339, 1524 |
| EcoT38I | GRGCYC | 1 cut(s) | 1872 |
| ErhI | CCWWGG | 1 cut(s) | 1083 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 630, 662 |
| FaqI | GGGAC | 3 cut(s) | 1923, 1958, 3344 |
| FauI | CCCGC | 1 cut(s) | 698 |
| FbaI | TGATCA | 1 cut(s) | 2926 |
| FblI | GTMKAC | 1 cut(s) | 2079 |
| FokI | GGATG | 7 cut(s) | 317, 503, 1625, 1825, 2034, 2218, 2577 |
| FriOI | GRGCYC | 1 cut(s) | 1872 |
| FspBI | CTAG | 6 cut(s) | 818, 1421, 1430, 1862, 2235, 2664 |
| GsaI | CCCAGC | 1 cut(s) | 1826 |
| GsuI | CTGGAG | 6 cut(s) | 493, 1005, 1553, 1788, 2753, 2884 |
| HaeIII | GGCC | 9 cut(s) | 138, 358, 816, 1203, 1484, 1813, 3236, 3529, 3549 |
| HapII | CCGG | 1 cut(s) | 1815 |
| HgaI | GACGC | 3 cut(s) | 2605, 3269, 3287 |
| Hin1I | GRCGYC | 1 cut(s) | 3298 |
| HincII | GTYRAC | 1 cut(s) | 2131 |
| HindII | GTYRAC | 1 cut(s) | 2131 |
| HindIII | AAGCTT | 2 cut(s) | 1759, 2072 |
| HpaII | CCGG | 1 cut(s) | 1815 |
| HphI | GGTGA | 5 cut(s) | 425, 1560, 2431, 2936, 3374 |
| Hpy166II | GTNNAC | 8 cut(s) | 513, 739, 1219, 1232, 2080, 2131, 2917, 3382 |
| Hpy8I | GTNNAC | 8 cut(s) | 513, 739, 1219, 1232, 2080, 2131, 2917, 3382 |
| HpyCH4III | ACNGT | 5 cut(s) | 393, 1886, 2429, 2757, 3060 |
| HpyCH4IV | ACGT | 6 cut(s) | 586, 1042, 1588, 2447, 2545, 3354 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 711, 1424, 1528, 1590, 1876, 3233, 3304 |
| HpyF3I | CTNAG | 9 cut(s) | 197, 485, 520, 778, 937, 2040, 2336, 2360, 3437 |
| HpySE526I | ACGT | 6 cut(s) | 586, 1042, 1588, 2447, 2545, 3354 |
| Hsp92I | GRCGYC | 1 cut(s) | 3298 |
| KpnI | GGTACC | 1 cut(s) | 397 |
| Ksp22I | TGATCA | 1 cut(s) | 2926 |
| LguI | GCTCTTC | 1 cut(s) | 186 |
| LmnI | GCTCC | 2 cut(s) | 2446, 2734 |
| Lsp1109I | GCAGC | 9 cut(s) | 506, 1023, 1255, 2153, 2854, 3115, 3234, 3291, 3359 |
| MabI | ACCWGGT | 1 cut(s) | 3384 |
| MaeI | CTAG | 6 cut(s) | 818, 1421, 1430, 1862, 2235, 2664 |
| MaeII | ACGT | 6 cut(s) | 586, 1042, 1588, 2447, 2545, 3354 |
| MaeIII | GTNAC | 8 cut(s) | 1109, 1280, 1566, 2546, 2593, 2873, 3325, 3485 |
| MbiI | CCGCTC | 1 cut(s) | 2335 |
| MfeI | CAATTG | 6 cut(s) | 347, 723, 747, 1173, 2265, 2857 |
| MflI | RGATCY | 4 cut(s) | 318, 376, 1345, 2356 |
| MhlI | GDGCHC | 1 cut(s) | 1872 |
| MlsI | TGGCCA | 1 cut(s) | 358 |
| MluNI | TGGCCA | 1 cut(s) | 358 |
| MlyI | GAGTC | 6 cut(s) | 635, 1574, 2573, 3441, 3482, 3531 |
| MmeI | TCCRAC | 6 cut(s) | 598, 951, 1866, 1983, 2038, 2468 |
| Mox20I | TGGCCA | 1 cut(s) | 358 |
| Mph1103I | ATGCAT | 3 cut(s) | 345, 1339, 1524 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1130, 1362, 1554 |
| MscI | TGGCCA | 1 cut(s) | 358 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1611 |
| Msp20I | TGGCCA | 1 cut(s) | 358 |
| MspA1I | CMGCKG | 3 cut(s) | 2845, 3030, 3304 |
| MspCI | CTTAAG | 3 cut(s) | 1913, 2017, 2108 |
| MspI | CCGG | 1 cut(s) | 1815 |
| MspR9I | CCNGG | 3 cut(s) | 1815, 2489, 3386 |
| MunI | CAATTG | 6 cut(s) | 347, 723, 747, 1173, 2265, 2857 |
| Mva1269I | GAATGC | 2 cut(s) | 1132, 2981 |
| MvaI | CCWGG | 2 cut(s) | 2489, 3386 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 711, 1424, 1528, 1590, 1876, 3233, 3304 |
| NciI | CCSGG | 1 cut(s) | 1815 |
| NheI | GCTAGC | 1 cut(s) | 2663 |
| NlaIV | GGNNCC | 5 cut(s) | 320, 378, 395, 1974, 3360 |
| NmuCI | GTSAC | 4 cut(s) | 1566, 2593, 2873, 3485 |
| NsiI | ATGCAT | 3 cut(s) | 345, 1339, 1524 |
| NspI | RCATGY | 2 cut(s) | 1268, 1380 |
| NspV | TTCGAA | 1 cut(s) | 3156 |
| PaeI | GCATGC | 1 cut(s) | 1268 |
| PagI | TCATGA | 2 cut(s) | 3007, 3220 |
| PceI | AGGCCT | 1 cut(s) | 816 |
| PciSI | GCTCTTC | 1 cut(s) | 186 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1894 |
| PctI | GAATGC | 2 cut(s) | 1132, 2981 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1130, 1362, 1554 |
| PfoI | TCCNGGA | 1 cut(s) | 2487 |
| PleI | GAGTC | 6 cut(s) | 634, 1573, 2573, 3441, 3482, 3531 |
| PpsI | GAGTC | 6 cut(s) | 634, 1573, 2573, 3441, 3482, 3531 |
| PpuMI | RGGWCCY | 1 cut(s) | 1972 |
| PshBI | ATTAAT | 2 cut(s) | 1752, 3168 |
| PsiI | TTATAA | 1 cut(s) | 1745 |
| Psp124BI | GAGCTC | 1 cut(s) | 1872 |
| Psp1406I | AACGTT | 1 cut(s) | 1042 |
| Psp5II | RGGWCCY | 1 cut(s) | 1972 |
| Psp6I | CCWGG | 2 cut(s) | 2487, 3384 |
| PspFI | CCCAGC | 1 cut(s) | 1822 |
| PspGI | CCWGG | 2 cut(s) | 2487, 3384 |
| PspN4I | GGNNCC | 5 cut(s) | 320, 378, 395, 1974, 3360 |
| PspPI | GGNCC | 6 cut(s) | 1483, 1812, 1972, 3235, 3358, 3527 |
| PspPPI | RGGWCCY | 1 cut(s) | 1972 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2582 |
| PsuI | RGATCY | 4 cut(s) | 318, 376, 1345, 2356 |
| PvuII | CAGCTG | 2 cut(s) | 2845, 3030 |
| RsaI | GTAC | 8 cut(s) | 390, 395, 550, 636, 804, 1188, 1470, 3177 |
| RsaNI | GTAC | 8 cut(s) | 389, 394, 549, 635, 803, 1187, 1469, 3176 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1611 |
| SacI | GAGCTC | 1 cut(s) | 1872 |
| SapI | GCTCTTC | 1 cut(s) | 186 |
| Sau96I | GGNCC | 6 cut(s) | 1483, 1812, 1972, 3235, 3358, 3527 |
| ScaI | AGTACT | 2 cut(s) | 1470, 3177 |
| SchI | GAGTC | 6 cut(s) | 635, 1574, 2573, 3441, 3482, 3531 |
| ScrFI | CCNGG | 3 cut(s) | 1815, 2489, 3386 |
| SduI | GDGCHC | 1 cut(s) | 1872 |
| SexAI | ACCWGGT | 1 cut(s) | 3384 |
| SfcI | CTRYAG | 2 cut(s) | 258, 1452 |
| SfuI | TTCGAA | 1 cut(s) | 3156 |
| SinI | GGWCC | 2 cut(s) | 1972, 3358 |
| SmiI | ATTTAAAT | 1 cut(s) | 597 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1611 |
| SmlI | CTYRAG | 9 cut(s) | 647, 1699, 1913, 2017, 2108, 2701, 2851, 3514, 3539 |
| SmoI | CTYRAG | 9 cut(s) | 647, 1699, 1913, 2017, 2108, 2701, 2851, 3514, 3539 |
| SpeI | ACTAGT | 1 cut(s) | 1861 |
| SphI | GCATGC | 1 cut(s) | 1268 |
| SseBI | AGGCCT | 1 cut(s) | 816 |
| SsiI | CCGC | 5 cut(s) | 705, 2333, 3184, 3302, 3375 |
| SspMI | CTAG | 6 cut(s) | 818, 1421, 1430, 1862, 2235, 2664 |
| SstI | GAGCTC | 1 cut(s) | 1872 |
| StuI | AGGCCT | 1 cut(s) | 816 |
| StyD4I | CCNGG | 3 cut(s) | 1813, 2487, 3384 |
| StyI | CCWWGG | 1 cut(s) | 1083 |
| SwaI | ATTTAAAT | 1 cut(s) | 597 |
| TaaI | ACNGT | 5 cut(s) | 393, 1886, 2429, 2757, 3060 |
| TaiI | ACGT | 6 cut(s) | 589, 1045, 1591, 2450, 2548, 3357 |
| TaqI | TCGA | 7 cut(s) | 823, 1866, 3156, 3202, 3264, 3322, 3477 |
| TatI | WGTACW | 4 cut(s) | 634, 1186, 1468, 3175 |
| TauI | GCSGC | 1 cut(s) | 2335 |
| TscAI | CASTG | 1 cut(s) | 366 |
| TseFI | GTSAC | 4 cut(s) | 1566, 2593, 2873, 3485 |
| TseI | GCWGC | 9 cut(s) | 494, 1011, 1268, 2166, 2842, 3128, 3247, 3304, 3372 |
| Tsp45I | GTSAC | 4 cut(s) | 1566, 2593, 2873, 3485 |
| TspGWI | ACGGA | 4 cut(s) | 53, 369, 1338, 3249 |
| TspRI | CASTG | 1 cut(s) | 366 |
| Vha464I | CTTAAG | 3 cut(s) | 1913, 2017, 2108 |
| VpaK11BI | GGWCC | 2 cut(s) | 1972, 3358 |
| VspI | ATTAAT | 2 cut(s) | 1752, 3168 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1967 |
| XbaI | TCTAGA | 2 cut(s) | 1429, 2234 |
| XceI | RCATGY | 2 cut(s) | 1268, 1380 |
| XmiI | GTMKAC | 1 cut(s) | 2079 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1130, 1362, 1554 |
| XspI | CTAG | 6 cut(s) | 818, 1421, 1430, 1862, 2235, 2664 |
| ZrmI | AGTACT | 2 cut(s) | 1470, 3177 |
| Zsp2I | ATGCAT | 3 cut(s) | 345, 1339, 1524 |