TMV resistance protein N-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 822 |
| Acc36I | ACCTGC | 1 cut(s) | 3978 |
| AccI | GTMKAC | 2 cut(s) | 149, 634 |
| AccII | CGCG | 1 cut(s) | 124 |
| AccIII | TCCGGA | 1 cut(s) | 3667 |
| AciI | CCGC | 9 cut(s) | 153, 567, 1160, 3625, 3764, 3897, 3955, 4076, 4152 |
| AclI | AACGTT | 1 cut(s) | 1021 |
| AclWI | GGATC | 7 cut(s) | 371, 384, 2004, 2637, 3111, 3324, 3955 |
| AcoI | YGGCCR | 1 cut(s) | 1793 |
| AcuI | CTGAAG | 3 cut(s) | 166, 1951, 2092 |
| AcvI | CACGTG | 1 cut(s) | 1537 |
| AcyI | GRCGYC | 1 cut(s) | 3767 |
| AdeI | CACNNNGTG | 1 cut(s) | 1157 |
| AfaI | GTAC | 5 cut(s) | 390, 1164, 1942, 2083, 2152 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 297, 3013, 3476, 3800, 3844, 3903 |
| AflIII | ACRYGT | 6 cut(s) | 122, 385, 1536, 1799, 1919, 2793 |
| AgeI | ACCGGT | 1 cut(s) | 522 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 641 |
| AjiI | CACGTC | 2 cut(s) | 931, 1157 |
| AjnI | CCWGG | 2 cut(s) | 694, 1140 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 600, 632, 2595, 2627, 3069, 3101 |
| Alw26I | GTCTC | 6 cut(s) | 808, 2545, 2959, 3019, 3232, 3646 |
| AlwI | GGATC | 7 cut(s) | 371, 384, 2004, 2637, 3111, 3324, 3955 |
| Ama87I | CYCGRG | 3 cut(s) | 570, 985, 1553 |
| Aor13HI | TCCGGA | 1 cut(s) | 3667 |
| AoxI | GGCC | 4 cut(s) | 692, 793, 1177, 1793 |
| AsiGI | ACCGGT | 1 cut(s) | 522 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1109, 1338 |
| AspLEI | GCGC | 1 cut(s) | 1563 |
| AspS9I | GGNCC | 5 cut(s) | 525, 692, 1124, 1268, 3919 |
| AsuC2I | CCSGG | 5 cut(s) | 986, 987, 1554, 1555, 3901 |
| AsuII | TTCGAA | 1 cut(s) | 3819 |
| AvaI | CYCGRG | 3 cut(s) | 570, 985, 1553 |
| AvaII | GGWCC | 4 cut(s) | 525, 1124, 1268, 3919 |
| AxyI | CCTNAGG | 2 cut(s) | 1545, 3008 |
| BalI | TGGCCA | 1 cut(s) | 1795 |
| BamHI | GGATCC | 1 cut(s) | 376 |
| BbrPI | CACGTG | 1 cut(s) | 1537 |
| BbsI | GAAGAC | 4 cut(s) | 262, 525, 2897, 3584 |
| BceAI | ACGGC | 3 cut(s) | 2434, 3121, 3757 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1814, 1848 |
| BciT130I | CCWGG | 2 cut(s) | 696, 1142 |
| BciVI | GTATCC | 3 cut(s) | 112, 315, 3987 |
| BclI | TGATCA | 5 cut(s) | 67, 433, 865, 1078, 4165 |
| BcnI | CCSGG | 5 cut(s) | 986, 987, 1554, 1555, 3901 |
| BcoDI | GTCTC | 6 cut(s) | 808, 2545, 2959, 3019, 3232, 3646 |
| BfaI | CTAG | 6 cut(s) | 942, 1316, 1397, 2405, 3218, 3476 |
| BfmI | CTRYAG | 2 cut(s) | 2265, 3971 |
| BfuAI | ACCTGC | 1 cut(s) | 3978 |
| BfuI | GTATCC | 3 cut(s) | 112, 315, 3987 |
| BglII | AGATCT | 1 cut(s) | 3079 |
| Bme1390I | CCNGG | 7 cut(s) | 696, 986, 987, 1142, 1554, 1555, 3901 |
| Bme18I | GGWCC | 4 cut(s) | 525, 1124, 1268, 3919 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 641 |
| BmeT110I | CYCGRG | 3 cut(s) | 570, 985, 1553 |
| BmgBI | CACGTC | 2 cut(s) | 931, 1157 |
| BmgT120I | GGNCC | 5 cut(s) | 525, 692, 1124, 1268, 3919 |
| BmiI | GGNNCC | 8 cut(s) | 378, 693, 1207, 1551, 2028, 2169, 2696, 4098 |
| BmrFI | CCNGG | 7 cut(s) | 696, 986, 987, 1142, 1554, 1555, 3901 |
| BpiI | GAAGAC | 4 cut(s) | 262, 525, 2897, 3584 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3713, 3745 |
| BpmI | CTGGAG | 1 cut(s) | 1770 |
| Bpu14I | TTCGAA | 1 cut(s) | 3819 |
| BpuEI | CTTGAG | 6 cut(s) | 277, 2318, 2356, 2569, 3043, 3256 |
| BpuMI | CCSGG | 5 cut(s) | 986, 987, 1554, 1555, 3901 |
| Bsa29I | ATCGAT | 1 cut(s) | 924 |
| BsaAI | YACGTR | 1 cut(s) | 1537 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1077 |
| BsaHI | GRCGYC | 1 cut(s) | 3767 |
| BsaJI | CCNNGG | 8 cut(s) | 984, 985, 1174, 1553, 1646, 1910, 3658, 3900 |
| BsaWI | WCCGGW | 2 cut(s) | 522, 3667 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 297, 3013, 3476, 3800, 3844, 3903 |
| Bse118I | RCCGGY | 2 cut(s) | 223, 522 |
| Bse1I | ACTGG | 7 cut(s) | 30, 359, 1774, 2154, 3866, 4004, 4174 |
| Bse21I | CCTNAGG | 2 cut(s) | 1545, 3008 |
| Bse3DI | GCAATG | 2 cut(s) | 2287, 3891 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1077 |
| BseAI | TCCGGA | 1 cut(s) | 3667 |
| BseBI | CCWGG | 2 cut(s) | 696, 1142 |
| BseCI | ATCGAT | 1 cut(s) | 924 |
| BseDI | CCNNGG | 8 cut(s) | 984, 985, 1174, 1553, 1646, 1910, 3658, 3900 |
| BseJI | GATNNNNATC | 1 cut(s) | 1077 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 297, 3013, 3476, 3800, 3844, 3903 |
| BseMI | GCAATG | 2 cut(s) | 2287, 3891 |
| BseMII | CTCAG | 5 cut(s) | 92, 1536, 1701, 2983, 4095 |
| BseNI | ACTGG | 7 cut(s) | 30, 359, 1774, 2154, 3866, 4004, 4174 |
| BseRI | GAGGAG | 3 cut(s) | 222, 260, 1247 |
| BseYI | CCCAGC | 3 cut(s) | 2856, 3471, 3543 |
| BsgI | GTGCAG | 2 cut(s) | 2686, 2774 |
| Bsh1236I | CGCG | 1 cut(s) | 124 |
| BshFI | GGCC | 4 cut(s) | 694, 795, 1179, 1795 |
| BshTI | ACCGGT | 1 cut(s) | 522 |
| BshVI | ATCGAT | 1 cut(s) | 924 |
| BsiHKCI | CYCGRG | 3 cut(s) | 570, 985, 1553 |
| BsiSI | CCGG | 6 cut(s) | 224, 523, 986, 1554, 3668, 3900 |
| BslFI | GGGAC | 4 cut(s) | 572, 851, 1628, 1908 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 297, 3013, 3476, 3800, 3844, 3903 |
| BsmAI | GTCTC | 6 cut(s) | 808, 2545, 2959, 3019, 3232, 3646 |
| BsmBI | CGTCTC | 2 cut(s) | 2545, 3019 |
| BsmFI | GGGAC | 4 cut(s) | 572, 851, 1628, 1908 |
| BsnI | GGCC | 4 cut(s) | 694, 795, 1179, 1795 |
| BsoBI | CYCGRG | 3 cut(s) | 570, 985, 1553 |
| Bsp119I | TTCGAA | 1 cut(s) | 3819 |
| Bsp13I | TCCGGA | 1 cut(s) | 3667 |
| Bsp1407I | TGTACA | 2 cut(s) | 1940, 2081 |
| Bsp19I | CCATGG | 1 cut(s) | 1646 |
| BspACI | CCGC | 9 cut(s) | 153, 567, 1160, 3625, 3764, 3897, 3955, 4076, 4152 |
| BspANI | GGCC | 4 cut(s) | 694, 795, 1179, 1795 |
| BspCNI | CTCAG | 5 cut(s) | 93, 1537, 1700, 2982, 4096 |
| BspDI | ATCGAT | 1 cut(s) | 924 |
| BspEI | TCCGGA | 1 cut(s) | 3667 |
| BspFNI | CGCG | 1 cut(s) | 124 |
| BspHI | TCATGA | 1 cut(s) | 3931 |
| BspLI | GGNNCC | 8 cut(s) | 378, 693, 1207, 1551, 2028, 2169, 2696, 4098 |
| BspMAI | CTGCAG | 1 cut(s) | 3975 |
| BspMI | ACCTGC | 1 cut(s) | 3978 |
| BspPI | GGATC | 7 cut(s) | 371, 384, 2004, 2637, 3111, 3324, 3955 |
| BspQI | GCTCTTC | 2 cut(s) | 234, 3777 |
| BspT104I | TTCGAA | 1 cut(s) | 3819 |
| BsrDI | GCAATG | 2 cut(s) | 2287, 3891 |
| BsrFI | RCCGGY | 2 cut(s) | 223, 522 |
| BsrGI | TGTACA | 2 cut(s) | 1940, 2081 |
| BsrI | ACTGG | 7 cut(s) | 30, 359, 1774, 2154, 3866, 4004, 4174 |
| BssAI | RCCGGY | 2 cut(s) | 223, 522 |
| BssECI | CCNNGG | 8 cut(s) | 984, 985, 1174, 1553, 1646, 1910, 3658, 3900 |
| BssNAI | GTATAC | 1 cut(s) | 150 |
| BssNI | GRCGYC | 1 cut(s) | 3767 |
| BssT1I | CCWWGG | 3 cut(s) | 1174, 1646, 1910 |
| Bst1107I | GTATAC | 1 cut(s) | 150 |
| Bst2UI | CCWGG | 2 cut(s) | 696, 1142 |
| Bst4CI | ACNGT | 4 cut(s) | 2664, 3161, 3558, 3986 |
| Bst6I | CTCTTC | 6 cut(s) | 199, 234, 1038, 2316, 3090, 3777 |
| BstACI | GRCGYC | 1 cut(s) | 3767 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1157 |
| BstAUI | TGTACA | 2 cut(s) | 1940, 2081 |
| BstBAI | YACGTR | 1 cut(s) | 1537 |
| BstBI | TTCGAA | 1 cut(s) | 3819 |
| BstC8I | GCNNGC | 6 cut(s) | 1354, 1374, 1405, 2294, 2914, 3601 |
| BstDSI | CCRYGG | 1 cut(s) | 1646 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3011 |
| BstFNI | CGCG | 1 cut(s) | 124 |
| BstHHI | GCGC | 1 cut(s) | 1563 |
| BstMAI | GTCTC | 6 cut(s) | 808, 2545, 2959, 3019, 3232, 3646 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1157, 1792, 2194, 3472, 4060 |
| BstNI | CCWGG | 2 cut(s) | 696, 1142 |
| BstNSI | RCATGY | 6 cut(s) | 389, 1136, 1376, 1803, 1923, 2797 |
| BstSCI | CCNGG | 7 cut(s) | 694, 984, 985, 1140, 1552, 1553, 3899 |
| BstSFI | CTRYAG | 2 cut(s) | 2265, 3971 |
| BstUI | CGCG | 1 cut(s) | 124 |
| BstV2I | GAAGAC | 4 cut(s) | 262, 525, 2897, 3584 |
| BstX2I | RGATCY | 6 cut(s) | 376, 1996, 2629, 3079, 3103, 3316 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3986 |
| BstYI | RGATCY | 6 cut(s) | 376, 1996, 2629, 3079, 3103, 3316 |
| BstZ17I | GTATAC | 1 cut(s) | 150 |
| Bsu15I | ATCGAT | 1 cut(s) | 924 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1545, 3008 |
| BsuI | GTATCC | 3 cut(s) | 112, 315, 3987 |
| BsuRI | GGCC | 4 cut(s) | 694, 795, 1179, 1795 |
| BsuTUI | ATCGAT | 1 cut(s) | 924 |
| BtgI | CCRYGG | 1 cut(s) | 1646 |
| BtgZI | GCGATG | 1 cut(s) | 1666 |
| BtrI | CACGTC | 2 cut(s) | 931, 1157 |
| BtsI | GCAGTG | 2 cut(s) | 3052, 3265 |
| BtsIMutI | CAGTG | 8 cut(s) | 1975, 2116, 3052, 3265, 3563, 3873, 3982, 3997 |
| BveI | ACCTGC | 1 cut(s) | 3978 |
| Cac8I | GCNNGC | 6 cut(s) | 1354, 1374, 1405, 2294, 2914, 3601 |
| CciI | TCATGA | 1 cut(s) | 3931 |
| CfoI | GCGC | 1 cut(s) | 1563 |
| Cfr10I | RCCGGY | 2 cut(s) | 223, 522 |
| Cfr13I | GGNCC | 5 cut(s) | 525, 692, 1124, 1268, 3919 |
| Cfr9I | CCCGGG | 2 cut(s) | 985, 1553 |
| ClaI | ATCGAT | 1 cut(s) | 924 |
| CpoI | CGGWCCG | 1 cut(s) | 525 |
| CseI | GACGC | 3 cut(s) | 425, 2986, 3756 |
| Csp6I | GTAC | 5 cut(s) | 389, 1163, 1941, 2082, 2151 |
| CspAI | ACCGGT | 1 cut(s) | 522 |
| CspI | CGGWCCG | 1 cut(s) | 525 |
| CviQI | GTAC | 5 cut(s) | 389, 1163, 1941, 2082, 2151 |
| DraI | TTTAAA | 1 cut(s) | 1363 |
| DraIII | CACNNNGTG | 1 cut(s) | 1157 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 822 |
| DriI | GACNNNNNGTC | 1 cut(s) | 641 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 822 |
| EaeI | YGGCCR | 1 cut(s) | 1793 |
| Eam1104I | CTCTTC | 6 cut(s) | 199, 234, 1038, 2316, 3090, 3777 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 641 |
| EarI | CTCTTC | 6 cut(s) | 199, 234, 1038, 2316, 3090, 3777 |
| EciI | GGCGGA | 1 cut(s) | 556 |
| Eco130I | CCWWGG | 3 cut(s) | 1174, 1646, 1910 |
| Eco147I | AGGCCT | 1 cut(s) | 1179 |
| Eco32I | GATATC | 2 cut(s) | 1588, 1665 |
| Eco47I | GGWCC | 4 cut(s) | 525, 1124, 1268, 3919 |
| Eco57I | CTGAAG | 3 cut(s) | 166, 1951, 2092 |
| Eco72I | CACGTG | 1 cut(s) | 1537 |
| Eco81I | CCTNAGG | 2 cut(s) | 1545, 3008 |
| Eco88I | CYCGRG | 3 cut(s) | 570, 985, 1553 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3011 |
| EcoO109I | RGGNCCY | 2 cut(s) | 692, 1268 |
| EcoRI | GAATTC | 5 cut(s) | 171, 996, 1974, 2976, 3663 |
| EcoRII | CCWGG | 2 cut(s) | 694, 1140 |
| EcoRV | GATATC | 2 cut(s) | 1588, 1665 |
| EcoT14I | CCWWGG | 3 cut(s) | 1174, 1646, 1910 |
| EcoT22I | ATGCAT | 2 cut(s) | 1111, 1497 |
| ErhI | CCWWGG | 3 cut(s) | 1174, 1646, 1910 |
| Esp3I | CGTCTC | 2 cut(s) | 2545, 3019 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3005, 3037 |
| FaqI | GGGAC | 4 cut(s) | 572, 851, 1628, 1908 |
| FauNDI | CATATG | 2 cut(s) | 589, 686 |
| FbaI | TGATCA | 5 cut(s) | 67, 433, 865, 1078, 4165 |
| FblI | GTMKAC | 2 cut(s) | 149, 634 |
| FspBI | CTAG | 6 cut(s) | 942, 1316, 1397, 2405, 3218, 3476 |
| GlaI | GCGC | 1 cut(s) | 1562 |
| GsaI | CCCAGC | 3 cut(s) | 2860, 3475, 3547 |
| GsuI | CTGGAG | 1 cut(s) | 1770 |
| HaeIII | GGCC | 4 cut(s) | 694, 795, 1179, 1795 |
| HapII | CCGG | 6 cut(s) | 224, 523, 986, 1554, 3668, 3900 |
| HgaI | GACGC | 3 cut(s) | 425, 2986, 3756 |
| HhaI | GCGC | 1 cut(s) | 1563 |
| Hin1I | GRCGYC | 1 cut(s) | 3767 |
| Hin6I | GCGC | 1 cut(s) | 1561 |
| HinP1I | GCGC | 1 cut(s) | 1561 |
| HincII | GTYRAC | 3 cut(s) | 2215, 3004, 3619 |
| HindII | GTYRAC | 3 cut(s) | 2215, 3004, 3619 |
| HindIII | AAGCTT | 7 cut(s) | 197, 1083, 1401, 1681, 1700, 2195, 2294 |
| HpaII | CCGG | 6 cut(s) | 224, 523, 986, 1554, 3668, 3900 |
| Hpy166II | GTNNAC | 6 cut(s) | 150, 580, 635, 2215, 3004, 3619 |
| Hpy8I | GTNNAC | 6 cut(s) | 150, 580, 635, 2215, 3004, 3619 |
| Hpy99I | CGWCG | 3 cut(s) | 1158, 3002, 3772 |
| HpyAV | CCTTC | 4 cut(s) | 190, 1190, 2057, 3007 |
| HpyCH4III | ACNGT | 4 cut(s) | 2664, 3161, 3558, 3986 |
| HpyCH4IV | ACGT | 6 cut(s) | 55, 930, 1021, 1156, 1536, 1897 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1157, 1792, 2194, 3472, 4060 |
| HpySE526I | ACGT | 6 cut(s) | 55, 930, 1021, 1156, 1536, 1897 |
| Hsp92I | GRCGYC | 1 cut(s) | 3767 |
| HspAI | GCGC | 1 cut(s) | 1561 |
| Kpn2I | TCCGGA | 1 cut(s) | 3667 |
| Ksp22I | TGATCA | 5 cut(s) | 67, 433, 865, 1078, 4165 |
| LguI | GCTCTTC | 2 cut(s) | 234, 3777 |
| LmnI | GCTCC | 4 cut(s) | 1211, 3670, 3829, 4060 |
| MaeI | CTAG | 6 cut(s) | 942, 1316, 1397, 2405, 3218, 3476 |
| MaeII | ACGT | 6 cut(s) | 55, 930, 1021, 1156, 1536, 1897 |
| MaeIII | GTNAC | 5 cut(s) | 413, 1539, 2059, 2573, 3047 |
| MfeI | CAATTG | 7 cut(s) | 240, 615, 717, 803, 2598, 3072, 3777 |
| MflI | RGATCY | 6 cut(s) | 376, 1996, 2629, 3079, 3103, 3316 |
| MlsI | TGGCCA | 1 cut(s) | 1795 |
| MluI | ACGCGT | 1 cut(s) | 122 |
| MluNI | TGGCCA | 1 cut(s) | 1795 |
| MmeI | TCCRAC | 6 cut(s) | 1794, 1974, 2161, 2759, 3081, 3446 |
| Mox20I | TGGCCA | 1 cut(s) | 1795 |
| Mph1103I | ATGCAT | 2 cut(s) | 1111, 1497 |
| MroI | TCCGGA | 1 cut(s) | 3667 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1109, 1338 |
| MscI | TGGCCA | 1 cut(s) | 1795 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1490, 1651, 1885, 3089, 3556, 3984 |
| Msp20I | TGGCCA | 1 cut(s) | 1795 |
| MspA1I | CMGCKG | 1 cut(s) | 765 |
| MspI | CCGG | 6 cut(s) | 224, 523, 986, 1554, 3668, 3900 |
| MspR9I | CCNGG | 7 cut(s) | 696, 986, 987, 1142, 1554, 1555, 3901 |
| MunI | CAATTG | 7 cut(s) | 240, 615, 717, 803, 2598, 3072, 3777 |
| MvaI | CCWGG | 2 cut(s) | 696, 1142 |
| MvnI | CGCG | 1 cut(s) | 124 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1157, 1792, 2194, 3472, 4060 |
| NciI | CCSGG | 5 cut(s) | 986, 987, 1554, 1555, 3901 |
| NcoI | CCATGG | 1 cut(s) | 1646 |
| NdeI | CATATG | 2 cut(s) | 589, 686 |
| NlaIV | GGNNCC | 8 cut(s) | 378, 693, 1207, 1551, 2028, 2169, 2696, 4098 |
| NmeAIII | GCCGAG | 1 cut(s) | 688 |
| NmuCI | GTSAC | 4 cut(s) | 413, 1539, 2573, 3047 |
| NsiI | ATGCAT | 2 cut(s) | 1111, 1497 |
| NspI | RCATGY | 6 cut(s) | 389, 1136, 1376, 1803, 1923, 2797 |
| NspV | TTCGAA | 1 cut(s) | 3819 |
| PaeI | GCATGC | 1 cut(s) | 1376 |
| PagI | TCATGA | 1 cut(s) | 3931 |
| PceI | AGGCCT | 1 cut(s) | 1179 |
| PciI | ACATGT | 4 cut(s) | 385, 1799, 1919, 2793 |
| PciSI | GCTCTTC | 2 cut(s) | 234, 3777 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 3034, 4013 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1109, 1338 |
| PinAI | ACCGGT | 1 cut(s) | 522 |
| PmaCI | CACGTG | 1 cut(s) | 1537 |
| PmlI | CACGTG | 1 cut(s) | 1537 |
| Ppu21I | YACGTR | 1 cut(s) | 1537 |
| PpuMI | RGGWCCY | 1 cut(s) | 1268 |
| PscI | ACATGT | 4 cut(s) | 385, 1799, 1919, 2793 |
| Psp1406I | AACGTT | 1 cut(s) | 1021 |
| Psp5II | RGGWCCY | 1 cut(s) | 1268 |
| Psp6I | CCWGG | 2 cut(s) | 694, 1140 |
| PspCI | CACGTG | 1 cut(s) | 1537 |
| PspFI | CCCAGC | 3 cut(s) | 2856, 3471, 3543 |
| PspGI | CCWGG | 2 cut(s) | 694, 1140 |
| PspN4I | GGNNCC | 8 cut(s) | 378, 693, 1207, 1551, 2028, 2169, 2696, 4098 |
| PspPI | GGNCC | 5 cut(s) | 525, 692, 1124, 1268, 3919 |
| PspPPI | RGGWCCY | 1 cut(s) | 1268 |
| PstI | CTGCAG | 1 cut(s) | 3975 |
| PsuI | RGATCY | 6 cut(s) | 376, 1996, 2629, 3079, 3103, 3316 |
| PvuII | CAGCTG | 1 cut(s) | 765 |
| RsaI | GTAC | 5 cut(s) | 390, 1164, 1942, 2083, 2152 |
| RsaNI | GTAC | 5 cut(s) | 389, 1163, 1941, 2082, 2151 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1490, 1651, 1885, 3089, 3556, 3984 |
| Rsr2I | CGGWCCG | 1 cut(s) | 525 |
| RsrII | CGGWCCG | 1 cut(s) | 525 |
| SapI | GCTCTTC | 2 cut(s) | 234, 3777 |
| Sau96I | GGNCC | 5 cut(s) | 525, 692, 1124, 1268, 3919 |
| ScrFI | CCNGG | 7 cut(s) | 696, 986, 987, 1142, 1554, 1555, 3901 |
| SfcI | CTRYAG | 2 cut(s) | 2265, 3971 |
| SfuI | TTCGAA | 1 cut(s) | 3819 |
| SinI | GGWCC | 4 cut(s) | 525, 1124, 1268, 3919 |
| SmaI | CCCGGG | 2 cut(s) | 987, 1555 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1490, 1651, 1885, 3089, 3556, 3984 |
| SmlI | CTYRAG | 6 cut(s) | 292, 2297, 2335, 2548, 3022, 3235 |
| SmoI | CTYRAG | 6 cut(s) | 292, 2297, 2335, 2548, 3022, 3235 |
| SphI | GCATGC | 1 cut(s) | 1376 |
| SseBI | AGGCCT | 1 cut(s) | 1179 |
| SsiI | CCGC | 9 cut(s) | 153, 567, 1160, 3625, 3764, 3897, 3955, 4076, 4152 |
| SspI | AATATT | 3 cut(s) | 2458, 3145, 3311 |
| SspMI | CTAG | 6 cut(s) | 942, 1316, 1397, 2405, 3218, 3476 |
| StuI | AGGCCT | 1 cut(s) | 1179 |
| StyD4I | CCNGG | 7 cut(s) | 694, 984, 985, 1140, 1552, 1553, 3899 |
| StyI | CCWWGG | 3 cut(s) | 1174, 1646, 1910 |
| TaaI | ACNGT | 4 cut(s) | 2664, 3161, 3558, 3986 |
| TaiI | ACGT | 6 cut(s) | 58, 933, 1024, 1159, 1539, 1900 |
| TaqI | TCGA | 7 cut(s) | 109, 924, 1862, 2041, 2760, 3447, 3819 |
| TatI | WGTACW | 2 cut(s) | 1940, 2081 |
| TauI | GCSGC | 3 cut(s) | 3767, 3899, 4154 |
| TscAI | CASTG | 8 cut(s) | 1975, 2116, 3052, 3265, 3563, 3873, 3989, 4004 |
| TseFI | GTSAC | 4 cut(s) | 413, 1539, 2573, 3047 |
| Tsp45I | GTSAC | 4 cut(s) | 413, 1539, 2573, 3047 |
| TspGWI | ACGGA | 7 cut(s) | 416, 485, 734, 1794, 2437, 3783, 3860 |
| TspMI | CCCGGG | 2 cut(s) | 985, 1553 |
| TspRI | CASTG | 8 cut(s) | 1975, 2116, 3052, 3265, 3563, 3873, 3989, 4004 |
| VpaK11BI | GGWCC | 4 cut(s) | 525, 1124, 1268, 3919 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3011 |
| XbaI | TCTAGA | 1 cut(s) | 1315 |
| XceI | RCATGY | 6 cut(s) | 389, 1136, 1376, 1803, 1923, 2797 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3271 |
| XmaI | CCCGGG | 2 cut(s) | 985, 1553 |
| XmiI | GTMKAC | 2 cut(s) | 149, 634 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1109, 1338 |
| XspI | CTAG | 6 cut(s) | 942, 1316, 1397, 2405, 3218, 3476 |
| Zsp2I | ATGCAT | 2 cut(s) | 1111, 1497 |