TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 27 - 195 | 7.8e-57 | TIR domain |
| TIR_2 | PF13676 | 30 - 125 | 3.1e-14 | TIR domain |
| NB-ARC | PF00931 | 206 - 377 | 1.5e-21 | NB-ARC domain |
| ATPase_2 | PF01637 | 208 - 322 | 1.2e-07 | ATPase domain predominantly from Archaea |
| NACHT | PF05729 | 228 - 370 | 7e-06 | NACHT domain |
| WHD_ROQ1 | PF23282 | 448 - 516 | 1.6e-17 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 677 - 791 | 6.2e-10 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 708 - 778 | 3.3e-11 | Disease resistance protein RPS4B-like, leucine-rich repeats |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2858 |
| AatII | GACGTC | 1 cut(s) | 2762 |
| Acc36I | ACCTGC | 1 cut(s) | 2858 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2534 |
| AccI | GTMKAC | 1 cut(s) | 348 |
| AccII | CGCG | 2 cut(s) | 118, 1599 |
| AciI | CCGC | 9 cut(s) | 110, 145, 452, 656, 949, 1692, 1939, 2720, 3110 |
| AclWI | GGATC | 7 cut(s) | 247, 365, 659, 963, 2123, 2151, 2223 |
| AcoI | YGGCCR | 2 cut(s) | 2047, 2682 |
| AcuI | CTGAAG | 2 cut(s) | 85, 2817 |
| AcvI | CACGTG | 1 cut(s) | 1864 |
| AcyI | GRCGYC | 1 cut(s) | 2759 |
| AdeI | CACNNNGTG | 1 cut(s) | 863 |
| AfaI | GTAC | 5 cut(s) | 143, 1141, 1570, 2316, 2386 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 23, 151, 2045, 2534, 2720, 3185 |
| AflII | CTTAAG | 3 cut(s) | 638, 1039, 2165 |
| AgeI | ACCGGT | 1 cut(s) | 2422 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2197 |
| AjnI | CCWGG | 4 cut(s) | 399, 768, 2211, 2527 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2799, 2831 |
| AleI | CACNNNNGTG | 1 cut(s) | 1866 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1792, 1824 |
| Alw26I | GTCTC | 6 cut(s) | 1645, 2057, 2184, 2289, 2620, 2766 |
| AlwI | GGATC | 7 cut(s) | 247, 365, 659, 963, 2123, 2151, 2223 |
| AoxI | GGCC | 9 cut(s) | 133, 397, 1461, 1871, 2047, 2269, 2464, 2682, 3229 |
| ApaI | GGGCCC | 1 cut(s) | 1875 |
| ApeKI | GCWGC | 5 cut(s) | 467, 482, 1858, 2295, 2370 |
| AsiGI | ACCGGT | 1 cut(s) | 2422 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1533, 2409 |
| AspLEI | GCGC | 1 cut(s) | 120 |
| AspS9I | GGNCC | 8 cut(s) | 26, 397, 946, 995, 1871, 1872, 1942, 2464 |
| AsuHPI | GGTGA | 7 cut(s) | 413, 419, 1391, 1660, 2071, 2703, 2839 |
| AvaII | GGWCC | 4 cut(s) | 26, 946, 995, 1942 |
| BaeGI | GKGCMC | 1 cut(s) | 1875 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2298, 2331 |
| BalI | TGGCCA | 1 cut(s) | 2684 |
| BanII | GRGCYC | 2 cut(s) | 1048, 1875 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1123, 1155, 1323, 1355 |
| BauI | CACGAG | 3 cut(s) | 621, 2502, 2646 |
| BbrPI | CACGTG | 1 cut(s) | 1864 |
| BbsI | GAAGAC | 2 cut(s) | 48, 666 |
| BbvI | GCAGC | 5 cut(s) | 479, 494, 1845, 2282, 2357 |
| BccI | CCATC | 7 cut(s) | 506, 1795, 1943, 2326, 2507, 2716, 2731 |
| BceAI | ACGGC | 2 cut(s) | 2034, 2838 |
| BciT130I | CCWGG | 4 cut(s) | 401, 770, 2213, 2529 |
| BciVI | GTATCC | 1 cut(s) | 106 |
| BclI | TGATCA | 1 cut(s) | 1467 |
| BcoDI | GTCTC | 6 cut(s) | 1645, 2057, 2184, 2289, 2620, 2766 |
| BfaI | CTAG | 2 cut(s) | 861, 1572 |
| BfmI | CTRYAG | 1 cut(s) | 2363 |
| BfrI | CTTAAG | 3 cut(s) | 638, 1039, 2165 |
| BfuAI | ACCTGC | 1 cut(s) | 2858 |
| BfuI | GTATCC | 1 cut(s) | 106 |
| BglII | AGATCT | 3 cut(s) | 312, 1222, 2792 |
| BisI | GCNGC | 6 cut(s) | 468, 483, 1859, 2296, 2371, 3110 |
| BlsI | GCNGC | 6 cut(s) | 469, 484, 1860, 2297, 2372, 3111 |
| Bme1390I | CCNGG | 4 cut(s) | 401, 770, 2213, 2529 |
| Bme18I | GGWCC | 4 cut(s) | 26, 946, 995, 1942 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2197 |
| BmgT120I | GGNCC | 8 cut(s) | 26, 397, 946, 995, 1871, 1872, 1942, 2464 |
| BmiI | GGNNCC | 4 cut(s) | 28, 1873, 1943, 2725 |
| BmrFI | CCNGG | 4 cut(s) | 401, 770, 2213, 2529 |
| BmsI | GCATC | 7 cut(s) | 287, 400, 1246, 1488, 1650, 2241, 3096 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1543 |
| BpiI | GAAGAC | 2 cut(s) | 48, 666 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 33 |
| BpmI | CTGGAG | 3 cut(s) | 996, 2081, 2369 |
| Bpu10I | CCTNAGC | 1 cut(s) | 425 |
| BpuEI | CTTGAG | 1 cut(s) | 1628 |
| BsaAI | YACGTR | 1 cut(s) | 1864 |
| BsaHI | GRCGYC | 1 cut(s) | 2759 |
| BsaJI | CCNNGG | 1 cut(s) | 1841 |
| BsaWI | WCCGGW | 1 cut(s) | 2422 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1746, 1776, 2643, 2673, 3079, 3109 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 23, 151, 2045, 2534, 2720, 3185 |
| Bse118I | RCCGGY | 2 cut(s) | 2422, 2475 |
| Bse1I | ACTGG | 6 cut(s) | 1253, 1802, 1893, 2233, 2272, 2846 |
| Bse3DI | GCAATG | 1 cut(s) | 2467 |
| BseBI | CCWGG | 4 cut(s) | 401, 770, 2213, 2529 |
| BseDI | CCNNGG | 1 cut(s) | 1841 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 23, 151, 2045, 2534, 2720, 3185 |
| BseMI | GCAATG | 1 cut(s) | 2467 |
| BseMII | CTCAG | 3 cut(s) | 86, 1158, 2265 |
| BseNI | ACTGG | 6 cut(s) | 1253, 1802, 1893, 2233, 2272, 2846 |
| BseRI | GAGGAG | 3 cut(s) | 40, 213, 2406 |
| BseSI | GKGCMC | 1 cut(s) | 1875 |
| BseXI | GCAGC | 5 cut(s) | 479, 494, 1845, 2282, 2357 |
| BsgI | GTGCAG | 2 cut(s) | 1844, 1861 |
| Bsh1236I | CGCG | 2 cut(s) | 118, 1599 |
| Bsh1285I | CGRYCG | 3 cut(s) | 1820, 2476, 2602 |
| BshFI | GGCC | 9 cut(s) | 135, 399, 1463, 1873, 2049, 2271, 2466, 2684, 3231 |
| BshTI | ACCGGT | 1 cut(s) | 2422 |
| BsiEI | CGRYCG | 3 cut(s) | 1820, 2476, 2602 |
| BsiSI | CCGG | 2 cut(s) | 2423, 2476 |
| BslFI | GGGAC | 4 cut(s) | 1531, 1955, 2239, 2954 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 23, 151, 2045, 2534, 2720, 3185 |
| BsmAI | GTCTC | 6 cut(s) | 1645, 2057, 2184, 2289, 2620, 2766 |
| BsmBI | CGTCTC | 3 cut(s) | 1645, 2057, 2766 |
| BsmFI | GGGAC | 4 cut(s) | 1531, 1955, 2239, 2954 |
| BsnI | GGCC | 9 cut(s) | 135, 399, 1463, 1873, 2049, 2271, 2466, 2684, 3231 |
| Bsp120I | GGGCCC | 1 cut(s) | 1871 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1048, 1875 |
| Bsp68I | TCGCGA | 1 cut(s) | 1599 |
| BspACI | CCGC | 9 cut(s) | 110, 145, 452, 656, 949, 1692, 1939, 2720, 3110 |
| BspANI | GGCC | 9 cut(s) | 135, 399, 1463, 1873, 2049, 2271, 2466, 2684, 3231 |
| BspCNI | CTCAG | 3 cut(s) | 87, 1159, 2264 |
| BspFNI | CGCG | 2 cut(s) | 118, 1599 |
| BspLI | GGNNCC | 4 cut(s) | 28, 1873, 1943, 2725 |
| BspMI | ACCTGC | 1 cut(s) | 2858 |
| BspPI | GGATC | 7 cut(s) | 247, 365, 659, 963, 2123, 2151, 2223 |
| BspQI | GCTCTTC | 1 cut(s) | 1112 |
| BspTI | CTTAAG | 3 cut(s) | 638, 1039, 2165 |
| BsrDI | GCAATG | 1 cut(s) | 2467 |
| BsrFI | RCCGGY | 2 cut(s) | 2422, 2475 |
| BsrI | ACTGG | 6 cut(s) | 1253, 1802, 1893, 2233, 2272, 2846 |
| BssAI | RCCGGY | 2 cut(s) | 2422, 2475 |
| BssECI | CCNNGG | 1 cut(s) | 1841 |
| BssNI | GRCGYC | 1 cut(s) | 2759 |
| BssSI | CACGAG | 3 cut(s) | 621, 2502, 2646 |
| BssT1I | CCWWGG | 1 cut(s) | 1841 |
| Bst2BI | CACGAG | 3 cut(s) | 621, 2502, 2646 |
| Bst2UI | CCWGG | 4 cut(s) | 401, 770, 2213, 2529 |
| Bst4CI | ACNGT | 7 cut(s) | 1054, 1578, 1995, 2367, 2715, 3018, 3079 |
| Bst6I | CTCTTC | 6 cut(s) | 37, 43, 49, 1112, 2232, 2684 |
| BstACI | GRCGYC | 1 cut(s) | 2759 |
| BstAFI | CTTAAG | 3 cut(s) | 638, 1039, 2165 |
| BstBAI | YACGTR | 1 cut(s) | 1864 |
| BstDEI | CTNAG | 7 cut(s) | 8, 95, 425, 837, 928, 1167, 2251 |
| BstFNI | CGCG | 2 cut(s) | 118, 1599 |
| BstHHI | GCGC | 1 cut(s) | 120 |
| BstMAI | GTCTC | 6 cut(s) | 1645, 2057, 2184, 2289, 2620, 2766 |
| BstMCI | CGRYCG | 3 cut(s) | 1820, 2476, 2602 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 275, 1864 |
| BstNI | CCWGG | 4 cut(s) | 401, 770, 2213, 2529 |
| BstNSI | RCATGY | 2 cut(s) | 1368, 2826 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1543 |
| BstSCI | CCNGG | 4 cut(s) | 399, 768, 2211, 2527 |
| BstSFI | CTRYAG | 1 cut(s) | 2363 |
| BstSLI | GKGCMC | 1 cut(s) | 1875 |
| BstUI | CGCG | 2 cut(s) | 118, 1599 |
| BstV1I | GCAGC | 5 cut(s) | 479, 494, 1845, 2282, 2357 |
| BstV2I | GAAGAC | 2 cut(s) | 48, 666 |
| BstX2I | RGATCY | 6 cut(s) | 312, 370, 1222, 2143, 2215, 2792 |
| BstYI | RGATCY | 6 cut(s) | 312, 370, 1222, 2143, 2215, 2792 |
| BsuI | GTATCC | 1 cut(s) | 106 |
| BsuRI | GGCC | 9 cut(s) | 135, 399, 1463, 1873, 2049, 2271, 2466, 2684, 3231 |
| BtsIMutI | CAGTG | 4 cut(s) | 1886, 2265, 2372, 3100 |
| BtuMI | TCGCGA | 1 cut(s) | 1599 |
| BveI | ACCTGC | 1 cut(s) | 2858 |
| CfoI | GCGC | 1 cut(s) | 120 |
| Cfr10I | RCCGGY | 2 cut(s) | 2422, 2475 |
| Cfr13I | GGNCC | 8 cut(s) | 26, 397, 946, 995, 1871, 1872, 1942, 2464 |
| Csp6I | GTAC | 5 cut(s) | 142, 1140, 1569, 2315, 2385 |
| CspAI | ACCGGT | 1 cut(s) | 2422 |
| CviQI | GTAC | 5 cut(s) | 142, 1140, 1569, 2315, 2385 |
| DdeI | CTNAG | 7 cut(s) | 8, 95, 425, 837, 928, 1167, 2251 |
| DraI | TTTAAA | 1 cut(s) | 1375 |
| DraIII | CACNNNGTG | 1 cut(s) | 863 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2197 |
| EaeI | YGGCCR | 2 cut(s) | 2047, 2682 |
| Eam1104I | CTCTTC | 6 cut(s) | 37, 43, 49, 1112, 2232, 2684 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2197 |
| EarI | CTCTTC | 6 cut(s) | 37, 43, 49, 1112, 2232, 2684 |
| EciI | GGCGGA | 1 cut(s) | 467 |
| Eco130I | CCWWGG | 1 cut(s) | 1841 |
| Eco147I | AGGCCT | 1 cut(s) | 1463 |
| Eco24I | GRGCYC | 2 cut(s) | 1048, 1875 |
| Eco32I | GATATC | 2 cut(s) | 558, 1280 |
| Eco47I | GGWCC | 4 cut(s) | 26, 946, 995, 1942 |
| Eco57I | CTGAAG | 2 cut(s) | 85, 2817 |
| Eco72I | CACGTG | 1 cut(s) | 1864 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1872, 1942 |
| EcoRI | GAATTC | 2 cut(s) | 1962, 2801 |
| EcoRII | CCWGG | 4 cut(s) | 399, 768, 2211, 2527 |
| EcoRV | GATATC | 2 cut(s) | 558, 1280 |
| EcoT14I | CCWWGG | 1 cut(s) | 1841 |
| EcoT22I | ATGCAT | 3 cut(s) | 280, 1261, 1503 |
| EcoT38I | GRGCYC | 2 cut(s) | 1048, 1875 |
| ErhI | CCWWGG | 1 cut(s) | 1841 |
| Esp3I | CGTCTC | 3 cut(s) | 1645, 2057, 2766 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 278, 310, 621, 653, 1338, 1370 |
| FaqI | GGGAC | 4 cut(s) | 1531, 1955, 2239, 2954 |
| FauI | CCCGC | 2 cut(s) | 1932, 2713 |
| FbaI | TGATCA | 1 cut(s) | 1467 |
| FblI | GTMKAC | 1 cut(s) | 348 |
| Fnu4HI | GCNGC | 6 cut(s) | 468, 483, 1859, 2296, 2371, 3110 |
| FriOI | GRGCYC | 2 cut(s) | 1048, 1875 |
| Fsp4HI | GCNGC | 6 cut(s) | 468, 483, 1859, 2296, 2371, 3110 |
| FspBI | CTAG | 2 cut(s) | 861, 1572 |
| GlaI | GCGC | 1 cut(s) | 119 |
| GluI | GCNGC | 6 cut(s) | 468, 483, 1859, 2296, 2371, 3110 |
| GsuI | CTGGAG | 3 cut(s) | 996, 2081, 2369 |
| HaeIII | GGCC | 9 cut(s) | 135, 399, 1463, 1873, 2049, 2271, 2466, 2684, 3231 |
| HapII | CCGG | 2 cut(s) | 2423, 2476 |
| HhaI | GCGC | 1 cut(s) | 120 |
| Hin1I | GRCGYC | 1 cut(s) | 2759 |
| Hin6I | GCGC | 1 cut(s) | 118 |
| HinP1I | GCGC | 1 cut(s) | 118 |
| HincII | GTYRAC | 2 cut(s) | 2662, 2769 |
| HindII | GTYRAC | 2 cut(s) | 2662, 2769 |
| HindIII | AAGCTT | 3 cut(s) | 1696, 2060, 2378 |
| HpaII | CCGG | 2 cut(s) | 2423, 2476 |
| HphI | GGTGA | 7 cut(s) | 413, 419, 1391, 1660, 2071, 2703, 2839 |
| Hpy99I | CGWCG | 4 cut(s) | 379, 1569, 1825, 3047 |
| HpyCH4III | ACNGT | 7 cut(s) | 1054, 1578, 1995, 2367, 2715, 3018, 3079 |
| HpyCH4IV | ACGT | 5 cut(s) | 1446, 1567, 1863, 2344, 2759 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 275, 1864 |
| HpyF3I | CTNAG | 7 cut(s) | 8, 95, 425, 837, 928, 1167, 2251 |
| HpySE526I | ACGT | 5 cut(s) | 1446, 1567, 1863, 2344, 2759 |
| Hsp92I | GRCGYC | 1 cut(s) | 2759 |
| HspAI | GCGC | 1 cut(s) | 118 |
| Ksp22I | TGATCA | 1 cut(s) | 1467 |
| LguI | GCTCTTC | 1 cut(s) | 1112 |
| LmnI | GCTCC | 3 cut(s) | 217, 2002, 2100 |
| Lsp1109I | GCAGC | 5 cut(s) | 479, 494, 1845, 2282, 2357 |
| LweI | GCATC | 7 cut(s) | 287, 400, 1246, 1488, 1650, 2241, 3096 |
| MaeI | CTAG | 2 cut(s) | 861, 1572 |
| MaeII | ACGT | 5 cut(s) | 1446, 1567, 1863, 2344, 2759 |
| MaeIII | GTNAC | 7 cut(s) | 865, 1316, 1379, 2087, 2241, 2986, 3073 |
| MfeI | CAATTG | 2 cut(s) | 414, 2935 |
| MflI | RGATCY | 6 cut(s) | 312, 370, 1222, 2143, 2215, 2792 |
| MhlI | GDGCHC | 2 cut(s) | 1048, 1875 |
| MlsI | TGGCCA | 1 cut(s) | 2684 |
| MluNI | TGGCCA | 1 cut(s) | 2684 |
| MlyI | GAGTC | 5 cut(s) | 1553, 1876, 2622, 2764, 3207 |
| MmeI | TCCRAC | 5 cut(s) | 357, 440, 589, 2236, 2417 |
| Mox20I | TGGCCA | 1 cut(s) | 2684 |
| Mph1103I | ATGCAT | 3 cut(s) | 280, 1261, 1503 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1533, 2409 |
| MscI | TGGCCA | 1 cut(s) | 2684 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1496, 1646, 1866 |
| Msp20I | TGGCCA | 1 cut(s) | 2684 |
| MspA1I | CMGCKG | 1 cut(s) | 1692 |
| MspCI | CTTAAG | 3 cut(s) | 638, 1039, 2165 |
| MspI | CCGG | 2 cut(s) | 2423, 2476 |
| MspR9I | CCNGG | 4 cut(s) | 401, 770, 2213, 2529 |
| MunI | CAATTG | 2 cut(s) | 414, 2935 |
| MvaI | CCWGG | 4 cut(s) | 401, 770, 2213, 2529 |
| MvnI | CGCG | 2 cut(s) | 118, 1599 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 275, 1864 |
| NlaIV | GGNNCC | 4 cut(s) | 28, 1873, 1943, 2725 |
| NmuCI | GTSAC | 3 cut(s) | 865, 1379, 2986 |
| NruI | TCGCGA | 1 cut(s) | 1599 |
| NsiI | ATGCAT | 3 cut(s) | 280, 1261, 1503 |
| NspI | RCATGY | 2 cut(s) | 1368, 2826 |
| OliI | CACNNNNGTG | 1 cut(s) | 1866 |
| PaqCI | CACCTGC | 1 cut(s) | 2858 |
| PceI | AGGCCT | 1 cut(s) | 1463 |
| PciSI | GCTCTTC | 1 cut(s) | 1112 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1826 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1533, 2409 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2534 |
| PinAI | ACCGGT | 1 cut(s) | 2422 |
| PkrI | GCNGC | 6 cut(s) | 469, 484, 1860, 2297, 2372, 3111 |
| Ple19I | CGATCG | 1 cut(s) | 1820 |
| PleI | GAGTC | 5 cut(s) | 1552, 1876, 2622, 2764, 3206 |
| PmaCI | CACGTG | 1 cut(s) | 1864 |
| PmlI | CACGTG | 1 cut(s) | 1864 |
| PpsI | GAGTC | 5 cut(s) | 1552, 1876, 2622, 2764, 3206 |
| Ppu21I | YACGTR | 1 cut(s) | 1864 |
| PpuMI | RGGWCCY | 1 cut(s) | 1942 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1543 |
| Psp5II | RGGWCCY | 1 cut(s) | 1942 |
| Psp6I | CCWGG | 4 cut(s) | 399, 768, 2211, 2527 |
| PspCI | CACGTG | 1 cut(s) | 1864 |
| PspGI | CCWGG | 4 cut(s) | 399, 768, 2211, 2527 |
| PspN4I | GGNNCC | 4 cut(s) | 28, 1873, 1943, 2725 |
| PspOMI | GGGCCC | 1 cut(s) | 1871 |
| PspPI | GGNCC | 8 cut(s) | 26, 397, 946, 995, 1871, 1872, 1942, 2464 |
| PspPPI | RGGWCCY | 1 cut(s) | 1942 |
| PsuI | RGATCY | 6 cut(s) | 312, 370, 1222, 2143, 2215, 2792 |
| PvuI | CGATCG | 1 cut(s) | 1820 |
| RruI | TCGCGA | 1 cut(s) | 1599 |
| RsaI | GTAC | 5 cut(s) | 143, 1141, 1570, 2316, 2386 |
| RsaNI | GTAC | 5 cut(s) | 142, 1140, 1569, 2315, 2385 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1496, 1646, 1866 |
| SapI | GCTCTTC | 1 cut(s) | 1112 |
| SatI | GCNGC | 6 cut(s) | 468, 483, 1859, 2296, 2371, 3110 |
| Sau96I | GGNCC | 8 cut(s) | 26, 397, 946, 995, 1871, 1872, 1942, 2464 |
| SchI | GAGTC | 5 cut(s) | 1553, 1876, 2622, 2764, 3207 |
| ScrFI | CCNGG | 4 cut(s) | 401, 770, 2213, 2529 |
| SduI | GDGCHC | 2 cut(s) | 1048, 1875 |
| SfaNI | GCATC | 7 cut(s) | 287, 400, 1246, 1488, 1650, 2241, 3096 |
| SfcI | CTRYAG | 1 cut(s) | 2363 |
| SinI | GGWCC | 4 cut(s) | 26, 946, 995, 1942 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1496, 1646, 1866 |
| SmlI | CTYRAG | 4 cut(s) | 638, 1039, 1607, 2165 |
| SmoI | CTYRAG | 4 cut(s) | 638, 1039, 1607, 2165 |
| SseBI | AGGCCT | 1 cut(s) | 1463 |
| SsiI | CCGC | 9 cut(s) | 110, 145, 452, 656, 949, 1692, 1939, 2720, 3110 |
| SspMI | CTAG | 2 cut(s) | 861, 1572 |
| StuI | AGGCCT | 1 cut(s) | 1463 |
| StyD4I | CCNGG | 4 cut(s) | 399, 768, 2211, 2527 |
| StyI | CCWWGG | 1 cut(s) | 1841 |
| TaaI | ACNGT | 7 cut(s) | 1054, 1578, 1995, 2367, 2715, 3018, 3079 |
| TaiI | ACGT | 5 cut(s) | 1449, 1570, 1866, 2347, 2762 |
| TaqI | TCGA | 7 cut(s) | 1537, 1734, 2055, 2235, 2321, 3130, 3210 |
| TaqII | GACCGA | 1 cut(s) | 2588 |
| TauI | GCSGC | 1 cut(s) | 3112 |
| TscAI | CASTG | 4 cut(s) | 1893, 2272, 2372, 3100 |
| TseFI | GTSAC | 3 cut(s) | 865, 1379, 2986 |
| TseI | GCWGC | 5 cut(s) | 467, 482, 1858, 2295, 2370 |
| Tsp45I | GTSAC | 3 cut(s) | 865, 1379, 2986 |
| TspGWI | ACGGA | 4 cut(s) | 363, 1157, 1185, 1640 |
| TspRI | CASTG | 4 cut(s) | 1893, 2272, 2372, 3100 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2534 |
| Vha464I | CTTAAG | 3 cut(s) | 638, 1039, 2165 |
| VpaK11BI | GGWCC | 4 cut(s) | 26, 946, 995, 1942 |
| XceI | RCATGY | 2 cut(s) | 1368, 2826 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2734 |
| XmiI | GTMKAC | 1 cut(s) | 348 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1533, 2409 |
| XspI | CTAG | 2 cut(s) | 861, 1572 |
| ZraI | GACGTC | 1 cut(s) | 2760 |
| Zsp2I | ATGCAT | 3 cut(s) | 280, 1261, 1503 |