TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 18 - 183 | 9.2e-57 | TIR domain |
| TIR_2 | PF13676 | 21 - 130 | 1.7e-15 | TIR domain |
| NB-ARC | PF00931 | 201 - 367 | 1.1e-18 | NB-ARC domain |
| NACHT | PF05729 | 219 - 361 | 7.3e-06 | NACHT domain |
| WHD_ROQ1 | PF23282 | 443 - 511 | 1.5e-12 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 706 - 901 | 5.7e-20 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 711, 875, 1836 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 278 |
| Acc16I | TGCGCA | 1 cut(s) | 2684 |
| Acc36I | ACCTGC | 1 cut(s) | 1548 |
| AccIII | TCCGGA | 2 cut(s) | 1970, 2509 |
| AciI | CCGC | 4 cut(s) | 347, 828, 2955, 3114 |
| AclWI | GGATC | 7 cut(s) | 280, 338, 351, 933, 1779, 2076, 2115 |
| AcoI | YGGCCR | 1 cut(s) | 573 |
| AcuI | CTGAAG | 1 cut(s) | 522 |
| AcvI | CACGTG | 1 cut(s) | 2285 |
| AdeI | CACNNNGTG | 1 cut(s) | 1145 |
| AfaI | GTAC | 8 cut(s) | 357, 549, 606, 832, 1416, 1437, 1583, 2312 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 261 |
| AflII | CTTAAG | 2 cut(s) | 1999, 2666 |
| AflIII | ACRYGT | 3 cut(s) | 560, 1380, 1735 |
| AjiI | CACGTC | 2 cut(s) | 779, 1142 |
| AjnI | CCWGG | 2 cut(s) | 1310, 1543 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1220, 1252 |
| Alw21I | GWGCWC | 6 cut(s) | 279, 451, 2084, 2765, 3048, 3123 |
| Alw26I | GTCTC | 2 cut(s) | 22, 2156 |
| Alw44I | GTGCAC | 1 cut(s) | 3119 |
| AlwI | GGATC | 7 cut(s) | 280, 338, 351, 933, 1779, 2076, 2115 |
| Aor13HI | TCCGGA | 2 cut(s) | 1970, 2509 |
| AoxI | GGCC | 2 cut(s) | 573, 1165 |
| ApaLI | GTGCAC | 1 cut(s) | 3119 |
| ApeKI | GCWGC | 4 cut(s) | 1639, 3008, 3052, 3111 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 374, 1097, 2754, 2778 |
| AspLEI | GCGC | 1 cut(s) | 2685 |
| AspS9I | GGNCC | 1 cut(s) | 1048 |
| AsuC2I | CCSGG | 1 cut(s) | 2787 |
| AsuHPI | GGTGA | 5 cut(s) | 25, 392, 566, 625, 983 |
| AsuII | TTCGAA | 1 cut(s) | 1403 |
| AvaII | GGWCC | 1 cut(s) | 1048 |
| BaeGI | GKGCMC | 1 cut(s) | 3123 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2353, 2386 |
| BalI | TGGCCA | 1 cut(s) | 575 |
| BamHI | GGATCC | 1 cut(s) | 343 |
| BanII | GRGCYC | 2 cut(s) | 279, 451 |
| BbrPI | CACGTG | 1 cut(s) | 2285 |
| BbsI | GAAGAC | 1 cut(s) | 2498 |
| Bbv12I | GWGCWC | 6 cut(s) | 279, 451, 2084, 2765, 3048, 3123 |
| BbvI | GCAGC | 4 cut(s) | 1626, 3020, 3064, 3098 |
| BccI | CCATC | 5 cut(s) | 1460, 1681, 1834, 2540, 2957 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2696, 2730 |
| BciT130I | CCWGG | 2 cut(s) | 1312, 1545 |
| BciVI | GTATCC | 1 cut(s) | 79 |
| BclI | TGATCA | 2 cut(s) | 987, 2929 |
| BcnI | CCSGG | 1 cut(s) | 2787 |
| BcoDI | GTCTC | 2 cut(s) | 22, 2156 |
| BfaI | CTAG | 4 cut(s) | 1340, 1496, 2085, 3131 |
| BfrI | CTTAAG | 2 cut(s) | 1999, 2666 |
| BfuAI | ACCTGC | 1 cut(s) | 1548 |
| BfuI | GTATCC | 1 cut(s) | 79 |
| BisI | GCNGC | 4 cut(s) | 1640, 3009, 3053, 3112 |
| BlsI | GCNGC | 4 cut(s) | 1641, 3010, 3054, 3113 |
| BmcAI | AGTACT | 1 cut(s) | 1437 |
| Bme1390I | CCNGG | 3 cut(s) | 1312, 1545, 2787 |
| Bme18I | GGWCC | 1 cut(s) | 1048 |
| BmgBI | CACGTC | 2 cut(s) | 779, 1142 |
| BmgT120I | GGNCC | 1 cut(s) | 1048 |
| BmiI | GGNNCC | 1 cut(s) | 345 |
| BmrFI | CCNGG | 3 cut(s) | 1312, 1545, 2787 |
| BmrI | ACTGGG | 3 cut(s) | 578, 2165, 2271 |
| BmsI | GCATC | 7 cut(s) | 260, 776, 1297, 1473, 1855, 1887, 2405 |
| BmuI | ACTGGG | 3 cut(s) | 578, 2165, 2271 |
| BpiI | GAAGAC | 1 cut(s) | 2498 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 208, 240, 433, 465 |
| BpmI | CTGGAG | 1 cut(s) | 1101 |
| Bpu14I | TTCGAA | 1 cut(s) | 1403 |
| BpuEI | CTTGAG | 5 cut(s) | 241, 1097, 1146, 1404, 2180 |
| BpuMI | CCSGG | 1 cut(s) | 2787 |
| Bsa29I | ATCGAT | 2 cut(s) | 153, 928 |
| BsaAI | YACGTR | 4 cut(s) | 551, 1258, 1381, 2285 |
| BsaBI | GATNNNNATC | 2 cut(s) | 924, 2119 |
| BsaJI | CCNNGG | 3 cut(s) | 1311, 1544, 1841 |
| BsaWI | WCCGGW | 2 cut(s) | 1970, 2509 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2630, 2660 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 261 |
| Bse1I | ACTGG | 5 cut(s) | 36, 326, 584, 2171, 2266 |
| Bse3DI | GCAATG | 2 cut(s) | 1344, 2797 |
| Bse8I | GATNNNNATC | 2 cut(s) | 924, 2119 |
| BseAI | TCCGGA | 2 cut(s) | 1970, 2509 |
| BseBI | CCWGG | 2 cut(s) | 1312, 1545 |
| BseCI | ATCGAT | 2 cut(s) | 153, 928 |
| BseDI | CCNNGG | 3 cut(s) | 1311, 1544, 1841 |
| BseGI | GGATG | 5 cut(s) | 251, 1069, 2327, 2420, 2932 |
| BseJI | GATNNNNATC | 2 cut(s) | 924, 2119 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 261 |
| BseMI | GCAATG | 2 cut(s) | 1344, 2797 |
| BseNI | ACTGG | 5 cut(s) | 36, 326, 584, 2171, 2266 |
| BseRI | GAGGAG | 3 cut(s) | 93, 186, 457 |
| BseSI | GKGCMC | 1 cut(s) | 3123 |
| BseXI | GCAGC | 4 cut(s) | 1626, 3020, 3064, 3098 |
| Bsh1285I | CGRYCG | 1 cut(s) | 157 |
| BshFI | GGCC | 2 cut(s) | 575, 1167 |
| BshVI | ATCGAT | 2 cut(s) | 153, 928 |
| BsiEI | CGRYCG | 1 cut(s) | 157 |
| BsiHKAI | GWGCWC | 6 cut(s) | 279, 451, 2084, 2765, 3048, 3123 |
| BsiSI | CCGG | 4 cut(s) | 188, 1971, 2510, 2786 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 261 |
| BsmAI | GTCTC | 2 cut(s) | 22, 2156 |
| BsmI | GAATGC | 1 cut(s) | 1453 |
| BsnI | GGCC | 2 cut(s) | 575, 1167 |
| Bsp119I | TTCGAA | 1 cut(s) | 1403 |
| Bsp1286I | GDGCHC | 6 cut(s) | 279, 451, 2084, 2765, 3048, 3123 |
| Bsp13I | TCCGGA | 2 cut(s) | 1970, 2509 |
| Bsp1407I | TGTACA | 1 cut(s) | 2310 |
| BspACI | CCGC | 4 cut(s) | 347, 828, 2955, 3114 |
| BspANI | GGCC | 2 cut(s) | 575, 1167 |
| BspDI | ATCGAT | 2 cut(s) | 153, 928 |
| BspEI | TCCGGA | 2 cut(s) | 1970, 2509 |
| BspHI | TCATGA | 2 cut(s) | 856, 1570 |
| BspLI | GGNNCC | 1 cut(s) | 345 |
| BspMI | ACCTGC | 1 cut(s) | 1548 |
| BspPI | GGATC | 7 cut(s) | 280, 338, 351, 933, 1779, 2076, 2115 |
| BspQI | GCTCTTC | 2 cut(s) | 198, 2823 |
| BspT104I | TTCGAA | 1 cut(s) | 1403 |
| BspTI | CTTAAG | 2 cut(s) | 1999, 2666 |
| BsrDI | GCAATG | 2 cut(s) | 1344, 2797 |
| BsrGI | TGTACA | 1 cut(s) | 2310 |
| BsrI | ACTGG | 5 cut(s) | 36, 326, 584, 2171, 2266 |
| BssECI | CCNNGG | 3 cut(s) | 1311, 1544, 1841 |
| BssT1I | CCWWGG | 1 cut(s) | 1841 |
| Bst2UI | CCWGG | 2 cut(s) | 1312, 1545 |
| Bst4CI | ACNGT | 4 cut(s) | 885, 1715, 1810, 2967 |
| Bst6I | CTCTTC | 6 cut(s) | 25, 198, 204, 813, 2760, 2823 |
| BstAFI | CTTAAG | 2 cut(s) | 1999, 2666 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1145, 1492 |
| BstAUI | TGTACA | 1 cut(s) | 2310 |
| BstBAI | YACGTR | 4 cut(s) | 551, 1258, 1381, 2285 |
| BstBI | TTCGAA | 1 cut(s) | 1403 |
| BstC8I | GCNNGC | 2 cut(s) | 161, 1723 |
| BstDEI | CTNAG | 5 cut(s) | 452, 538, 816, 2072, 2699 |
| BstEII | GGTNACC | 1 cut(s) | 1364 |
| BstF5I | GGATG | 5 cut(s) | 251, 1069, 2327, 2420, 2932 |
| BstHHI | GCGC | 1 cut(s) | 2685 |
| BstMAI | GTCTC | 2 cut(s) | 22, 2156 |
| BstMCI | CGRYCG | 1 cut(s) | 157 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1145, 1492, 2662, 3052, 3108 |
| BstNI | CCWGG | 2 cut(s) | 1312, 1545 |
| BstNSI | RCATGY | 3 cut(s) | 564, 1353, 3102 |
| BstPI | GGTNACC | 1 cut(s) | 1364 |
| BstSCI | CCNGG | 3 cut(s) | 1310, 1543, 2785 |
| BstSLI | GKGCMC | 1 cut(s) | 3123 |
| BstSNI | TACGTA | 1 cut(s) | 1258 |
| BstV1I | GCAGC | 4 cut(s) | 1626, 3020, 3064, 3098 |
| BstV2I | GAAGAC | 1 cut(s) | 2498 |
| BstX2I | RGATCY | 4 cut(s) | 285, 343, 2068, 2120 |
| BstYI | RGATCY | 4 cut(s) | 285, 343, 2068, 2120 |
| Bsu15I | ATCGAT | 2 cut(s) | 153, 928 |
| BsuI | GTATCC | 1 cut(s) | 79 |
| BsuRI | GGCC | 2 cut(s) | 575, 1167 |
| BsuTUI | ATCGAT | 2 cut(s) | 153, 928 |
| BtgZI | GCGATG | 1 cut(s) | 2721 |
| BtrI | CACGTC | 2 cut(s) | 779, 1142 |
| BtsCI | GGATG | 5 cut(s) | 251, 1069, 2327, 2420, 2932 |
| BtsIMutI | CAGTG | 1 cut(s) | 1536 |
| BveI | ACCTGC | 1 cut(s) | 1548 |
| Cac8I | GCNNGC | 2 cut(s) | 161, 1723 |
| CciI | TCATGA | 2 cut(s) | 856, 1570 |
| CfoI | GCGC | 1 cut(s) | 2685 |
| Cfr13I | GGNCC | 1 cut(s) | 1048 |
| ClaI | ATCGAT | 2 cut(s) | 153, 928 |
| CseI | GACGC | 2 cut(s) | 392, 2660 |
| Csp6I | GTAC | 8 cut(s) | 356, 548, 605, 831, 1415, 1436, 1582, 2311 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 532, 567 |
| CviQI | GTAC | 8 cut(s) | 356, 548, 605, 831, 1415, 1436, 1582, 2311 |
| DdeI | CTNAG | 5 cut(s) | 452, 538, 816, 2072, 2699 |
| DraI | TTTAAA | 1 cut(s) | 2971 |
| DraIII | CACNNNGTG | 1 cut(s) | 1145 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 278 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 278 |
| EaeI | YGGCCR | 1 cut(s) | 573 |
| Eam1104I | CTCTTC | 6 cut(s) | 25, 198, 204, 813, 2760, 2823 |
| EarI | CTCTTC | 6 cut(s) | 25, 198, 204, 813, 2760, 2823 |
| EciI | GGCGGA | 1 cut(s) | 336 |
| Ecl136II | GAGCTC | 2 cut(s) | 277, 449 |
| Eco105I | TACGTA | 1 cut(s) | 1258 |
| Eco130I | CCWWGG | 1 cut(s) | 1841 |
| Eco147I | AGGCCT | 1 cut(s) | 1167 |
| Eco24I | GRGCYC | 2 cut(s) | 279, 451 |
| Eco32I | GATATC | 2 cut(s) | 535, 672 |
| Eco47I | GGWCC | 1 cut(s) | 1048 |
| Eco53kI | GAGCTC | 2 cut(s) | 277, 449 |
| Eco57I | CTGAAG | 1 cut(s) | 522 |
| Eco72I | CACGTG | 1 cut(s) | 2285 |
| Eco91I | GGTNACC | 1 cut(s) | 1364 |
| EcoICRI | GAGCTC | 2 cut(s) | 277, 449 |
| EcoO65I | GGTNACC | 1 cut(s) | 1364 |
| EcoRI | GAATTC | 1 cut(s) | 1903 |
| EcoRII | CCWGG | 2 cut(s) | 1310, 1543 |
| EcoRV | GATATC | 2 cut(s) | 535, 672 |
| EcoT14I | CCWWGG | 1 cut(s) | 1841 |
| EcoT22I | ATGCAT | 2 cut(s) | 1488, 3104 |
| EcoT38I | GRGCYC | 2 cut(s) | 279, 451 |
| ErhI | CCWWGG | 1 cut(s) | 1841 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 890, 922, 1252, 1284 |
| FauI | CCCGC | 1 cut(s) | 3107 |
| FauNDI | CATATG | 1 cut(s) | 2315 |
| FbaI | TGATCA | 2 cut(s) | 987, 2929 |
| Fnu4HI | GCNGC | 4 cut(s) | 1640, 3009, 3053, 3112 |
| FokI | GGATG | 5 cut(s) | 238, 1076, 2334, 2427, 2919 |
| FriOI | GRGCYC | 2 cut(s) | 279, 451 |
| Fsp4HI | GCNGC | 4 cut(s) | 1640, 3009, 3053, 3112 |
| FspBI | CTAG | 4 cut(s) | 1340, 1496, 2085, 3131 |
| FspI | TGCGCA | 1 cut(s) | 2684 |
| GlaI | GCGC | 1 cut(s) | 2684 |
| GluI | GCNGC | 4 cut(s) | 1640, 3009, 3053, 3112 |
| GsuI | CTGGAG | 1 cut(s) | 1101 |
| HaeIII | GGCC | 2 cut(s) | 575, 1167 |
| HapII | CCGG | 4 cut(s) | 188, 1971, 2510, 2786 |
| HgaI | GACGC | 2 cut(s) | 392, 2660 |
| HhaI | GCGC | 1 cut(s) | 2685 |
| Hin6I | GCGC | 1 cut(s) | 2683 |
| HinP1I | GCGC | 1 cut(s) | 2683 |
| HincII | GTYRAC | 1 cut(s) | 11 |
| HindII | GTYRAC | 1 cut(s) | 11 |
| HindIII | AAGCTT | 3 cut(s) | 1675, 1913, 2272 |
| HpaII | CCGG | 4 cut(s) | 188, 1971, 2510, 2786 |
| HphI | GGTGA | 5 cut(s) | 25, 392, 566, 625, 983 |
| Hpy166II | GTNNAC | 6 cut(s) | 11, 1522, 1582, 1781, 2311, 3121 |
| Hpy188I | TCNGA | 6 cut(s) | 488, 502, 1103, 2334, 2428, 2813 |
| Hpy8I | GTNNAC | 6 cut(s) | 11, 1522, 1582, 1781, 2311, 3121 |
| Hpy99I | CGWCG | 1 cut(s) | 1146 |
| HpyCH4III | ACNGT | 4 cut(s) | 885, 1715, 1810, 2967 |
| HpyCH4IV | ACGT | 8 cut(s) | 550, 778, 1141, 1257, 1380, 1552, 1737, 2284 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1145, 1492, 2662, 3052, 3108 |
| HpyF3I | CTNAG | 5 cut(s) | 452, 538, 816, 2072, 2699 |
| HpySE526I | ACGT | 8 cut(s) | 550, 778, 1141, 1257, 1380, 1552, 1737, 2284 |
| HspAI | GCGC | 1 cut(s) | 2683 |
| Kpn2I | TCCGGA | 2 cut(s) | 1970, 2509 |
| Ksp22I | TGATCA | 2 cut(s) | 987, 2929 |
| LguI | GCTCTTC | 2 cut(s) | 198, 2823 |
| LmnI | GCTCC | 2 cut(s) | 934, 1636 |
| Lsp1109I | GCAGC | 4 cut(s) | 1626, 3020, 3064, 3098 |
| LweI | GCATC | 7 cut(s) | 260, 776, 1297, 1473, 1855, 1887, 2405 |
| MaeI | CTAG | 4 cut(s) | 1340, 1496, 2085, 3131 |
| MaeII | ACGT | 8 cut(s) | 550, 778, 1141, 1257, 1380, 1552, 1737, 2284 |
| MaeIII | GTNAC | 5 cut(s) | 380, 554, 1364, 1383, 2101 |
| MfeI | CAATTG | 4 cut(s) | 693, 2247, 2686, 2925 |
| MflI | RGATCY | 4 cut(s) | 285, 343, 2068, 2120 |
| MhlI | GDGCHC | 6 cut(s) | 279, 451, 2084, 2765, 3048, 3123 |
| MlsI | TGGCCA | 1 cut(s) | 575 |
| MluNI | TGGCCA | 1 cut(s) | 575 |
| MlyI | GAGTC | 1 cut(s) | 221 |
| MmeI | TCCRAC | 5 cut(s) | 568, 817, 2020, 2412, 2703 |
| Mox20I | TGGCCA | 1 cut(s) | 575 |
| Mph1103I | ATGCAT | 2 cut(s) | 1488, 3104 |
| MroI | TCCGGA | 2 cut(s) | 1970, 2509 |
| MroXI | GAANNNNTTC | 4 cut(s) | 374, 1097, 2754, 2778 |
| MscI | TGGCCA | 1 cut(s) | 575 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1575, 1631, 3029 |
| Msp20I | TGGCCA | 1 cut(s) | 575 |
| MspA1I | CMGCKG | 2 cut(s) | 2342, 2955 |
| MspCI | CTTAAG | 2 cut(s) | 1999, 2666 |
| MspI | CCGG | 4 cut(s) | 188, 1971, 2510, 2786 |
| MspR9I | CCNGG | 3 cut(s) | 1312, 1545, 2787 |
| MunI | CAATTG | 4 cut(s) | 693, 2247, 2686, 2925 |
| Mva1269I | GAATGC | 1 cut(s) | 1453 |
| MvaI | CCWGG | 2 cut(s) | 1312, 1545 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1145, 1492, 2662, 3052, 3108 |
| NciI | CCSGG | 1 cut(s) | 2787 |
| NdeI | CATATG | 1 cut(s) | 2315 |
| NlaIV | GGNNCC | 1 cut(s) | 345 |
| NmuCI | GTSAC | 2 cut(s) | 380, 554 |
| NsbI | TGCGCA | 1 cut(s) | 2684 |
| NsiI | ATGCAT | 2 cut(s) | 1488, 3104 |
| NspI | RCATGY | 3 cut(s) | 564, 1353, 3102 |
| NspV | TTCGAA | 1 cut(s) | 1403 |
| PagI | TCATGA | 2 cut(s) | 856, 1570 |
| PceI | AGGCCT | 1 cut(s) | 1167 |
| PciI | ACATGT | 1 cut(s) | 560 |
| PciSI | GCTCTTC | 2 cut(s) | 198, 2823 |
| PctI | GAATGC | 1 cut(s) | 1453 |
| PdmI | GAANNNNTTC | 4 cut(s) | 374, 1097, 2754, 2778 |
| PkrI | GCNGC | 4 cut(s) | 1641, 3010, 3054, 3113 |
| Ple19I | CGATCG | 1 cut(s) | 157 |
| PleI | GAGTC | 1 cut(s) | 220 |
| PmaCI | CACGTG | 1 cut(s) | 2285 |
| PmlI | CACGTG | 1 cut(s) | 2285 |
| PpsI | GAGTC | 1 cut(s) | 220 |
| Ppu21I | YACGTR | 4 cut(s) | 551, 1258, 1381, 2285 |
| PscI | ACATGT | 1 cut(s) | 560 |
| PsiI | TTATAA | 3 cut(s) | 711, 875, 1836 |
| Psp124BI | GAGCTC | 2 cut(s) | 279, 451 |
| Psp6I | CCWGG | 2 cut(s) | 1310, 1543 |
| PspCI | CACGTG | 1 cut(s) | 2285 |
| PspEI | GGTNACC | 1 cut(s) | 1364 |
| PspGI | CCWGG | 2 cut(s) | 1310, 1543 |
| PspN4I | GGNNCC | 1 cut(s) | 345 |
| PspPI | GGNCC | 1 cut(s) | 1048 |
| PsuI | RGATCY | 4 cut(s) | 285, 343, 2068, 2120 |
| PvuI | CGATCG | 1 cut(s) | 157 |
| PvuII | CAGCTG | 1 cut(s) | 2342 |
| RsaI | GTAC | 8 cut(s) | 357, 549, 606, 832, 1416, 1437, 1583, 2312 |
| RsaNI | GTAC | 8 cut(s) | 356, 548, 605, 831, 1415, 1436, 1582, 2311 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1575, 1631, 3029 |
| SacI | GAGCTC | 2 cut(s) | 279, 451 |
| SapI | GCTCTTC | 2 cut(s) | 198, 2823 |
| SatI | GCNGC | 4 cut(s) | 1640, 3009, 3053, 3112 |
| Sau96I | GGNCC | 1 cut(s) | 1048 |
| ScaI | AGTACT | 1 cut(s) | 1437 |
| SchI | GAGTC | 1 cut(s) | 221 |
| ScrFI | CCNGG | 3 cut(s) | 1312, 1545, 2787 |
| SduI | GDGCHC | 6 cut(s) | 279, 451, 2084, 2765, 3048, 3123 |
| SfaNI | GCATC | 7 cut(s) | 260, 776, 1297, 1473, 1855, 1887, 2405 |
| SfuI | TTCGAA | 1 cut(s) | 1403 |
| SinI | GGWCC | 1 cut(s) | 1048 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1575, 1631, 3029 |
| SmlI | CTYRAG | 7 cut(s) | 256, 1076, 1161, 1419, 1999, 2159, 2666 |
| SmoI | CTYRAG | 7 cut(s) | 256, 1076, 1161, 1419, 1999, 2159, 2666 |
| SnaBI | TACGTA | 1 cut(s) | 1258 |
| SseBI | AGGCCT | 1 cut(s) | 1167 |
| SsiI | CCGC | 4 cut(s) | 347, 828, 2955, 3114 |
| SspI | AATATT | 1 cut(s) | 1792 |
| SspMI | CTAG | 4 cut(s) | 1340, 1496, 2085, 3131 |
| SstI | GAGCTC | 2 cut(s) | 279, 451 |
| StuI | AGGCCT | 1 cut(s) | 1167 |
| StyD4I | CCNGG | 3 cut(s) | 1310, 1543, 2785 |
| StyI | CCWWGG | 1 cut(s) | 1841 |
| TaaI | ACNGT | 4 cut(s) | 885, 1715, 1810, 2967 |
| TaiI | ACGT | 8 cut(s) | 553, 781, 1144, 1260, 1383, 1555, 1740, 2287 |
| TatI | WGTACW | 2 cut(s) | 1435, 2310 |
| TscAI | CASTG | 1 cut(s) | 1543 |
| TseFI | GTSAC | 2 cut(s) | 380, 554 |
| TseI | GCWGC | 4 cut(s) | 1639, 3008, 3052, 3111 |
| Tsp45I | GTSAC | 2 cut(s) | 380, 554 |
| TspGWI | ACGGA | 1 cut(s) | 1161 |
| TspRI | CASTG | 1 cut(s) | 1543 |
| Vha464I | CTTAAG | 2 cut(s) | 1999, 2666 |
| VneI | GTGCAC | 1 cut(s) | 3119 |
| VpaK11BI | GGWCC | 1 cut(s) | 1048 |
| XceI | RCATGY | 3 cut(s) | 564, 1353, 3102 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2344 |
| XmnI | GAANNNNTTC | 4 cut(s) | 374, 1097, 2754, 2778 |
| XspI | CTAG | 4 cut(s) | 1340, 1496, 2085, 3131 |
| ZrmI | AGTACT | 1 cut(s) | 1437 |
| Zsp2I | ATGCAT | 2 cut(s) | 1488, 3104 |