TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 23 - 187 | 5.8e-52 | TIR domain |
| TIR_2 | PF13676 | 25 - 120 | 6.1e-14 | TIR domain |
| NB-ARC | PF00931 | 203 - 374 | 3.9e-19 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 445 - 511 | 1.4e-11 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 646 - 736 | 4e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 655 - 865 | 2e-12 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 2931 |
| AccI | GTMKAC | 1 cut(s) | 1538 |
| AccII | CGCG | 1 cut(s) | 2327 |
| AciI | CCGC | 7 cut(s) | 504, 549, 645, 684, 1414, 2325, 2527 |
| AclWI | GGATC | 9 cut(s) | 232, 350, 363, 1773, 1806, 1819, 1917, 1956, 3006 |
| AcoI | YGGCCR | 1 cut(s) | 335 |
| AcuI | CTGAAG | 1 cut(s) | 2259 |
| AcyI | GRCGYC | 1 cut(s) | 2928 |
| AdeI | CACNNNGTG | 1 cut(s) | 73 |
| AfaI | GTAC | 4 cut(s) | 657, 1780, 2353, 2466 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 273, 1808, 1880, 2227, 2228, 2376, 2377 |
| AflIII | ACRYGT | 3 cut(s) | 1734, 2977, 3074 |
| AhlI | ACTAGT | 1 cut(s) | 289 |
| AjiI | CACGTC | 1 cut(s) | 1735 |
| AjnI | CCWGG | 2 cut(s) | 1905, 1942 |
| Alw21I | GWGCWC | 1 cut(s) | 1095 |
| Alw26I | GTCTC | 1 cut(s) | 1626 |
| AlwI | GGATC | 9 cut(s) | 232, 350, 363, 1773, 1806, 1819, 1917, 1956, 3006 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2643 |
| Ama87I | CYCGRG | 3 cut(s) | 499, 609, 1424 |
| AoxI | GGCC | 2 cut(s) | 335, 3311 |
| ApeKI | GCWGC | 8 cut(s) | 458, 473, 750, 2154, 2634, 2908, 3010, 3272 |
| AseI | ATTAAT | 1 cut(s) | 1977 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 204, 291, 2244 |
| AspA2I | CCTAGG | 2 cut(s) | 1277, 1717 |
| AspLEI | GCGC | 2 cut(s) | 2339, 2417 |
| AspS9I | GGNCC | 2 cut(s) | 943, 1721 |
| AsuC2I | CCSGG | 1 cut(s) | 1548 |
| AsuHPI | GGTGA | 9 cut(s) | 404, 454, 1562, 1670, 1790, 1862, 1895, 2314, 3187 |
| AsuII | TTCGAA | 1 cut(s) | 2567 |
| AvaI | CYCGRG | 3 cut(s) | 499, 609, 1424 |
| AvaII | GGWCC | 2 cut(s) | 943, 1721 |
| AvrII | CCTAGG | 2 cut(s) | 1277, 1717 |
| AxyI | CCTNAGG | 1 cut(s) | 3231 |
| BamHI | GGATCC | 2 cut(s) | 355, 1811 |
| BanII | GRGCYC | 2 cut(s) | 1095, 1548 |
| BbsI | GAAGAC | 2 cut(s) | 701, 3165 |
| Bbv12I | GWGCWC | 1 cut(s) | 1095 |
| BbvI | GCAGC | 8 cut(s) | 470, 485, 737, 2166, 2621, 2895, 2997, 3284 |
| BccI | CCATC | 8 cut(s) | 14, 367, 444, 737, 1250, 1504, 2611, 2656 |
| BceAI | ACGGC | 2 cut(s) | 1003, 3233 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2473, 2507 |
| BciT130I | CCWGG | 2 cut(s) | 1907, 1944 |
| BciVI | GTATCC | 2 cut(s) | 91, 1877 |
| BclI | TGATCA | 1 cut(s) | 2899 |
| BcnI | CCSGG | 1 cut(s) | 1548 |
| BcoDI | GTCTC | 1 cut(s) | 1626 |
| BcuI | ACTAGT | 1 cut(s) | 289 |
| BfaI | CTAG | 8 cut(s) | 290, 602, 1070, 1278, 1718, 2312, 2349, 3276 |
| BfmI | CTRYAG | 5 cut(s) | 1539, 2482, 2635, 3183, 3270 |
| BfoI | RGCGCY | 1 cut(s) | 2418 |
| BfuI | GTATCC | 2 cut(s) | 91, 1877 |
| BglII | AGATCT | 1 cut(s) | 2143 |
| BisI | GCNGC | 9 cut(s) | 459, 474, 751, 2155, 2527, 2635, 2909, 3011, 3273 |
| BlnI | CCTAGG | 2 cut(s) | 1277, 1717 |
| BlsI | GCNGC | 9 cut(s) | 460, 475, 752, 2156, 2528, 2636, 2910, 3012, 3274 |
| BmcAI | AGTACT | 1 cut(s) | 2353 |
| Bme1390I | CCNGG | 3 cut(s) | 1548, 1907, 1944 |
| Bme18I | GGWCC | 2 cut(s) | 943, 1721 |
| BmeT110I | CYCGRG | 3 cut(s) | 499, 609, 1424 |
| BmgBI | CACGTC | 1 cut(s) | 1735 |
| BmgT120I | GGNCC | 2 cut(s) | 943, 1721 |
| BmiI | GGNNCC | 4 cut(s) | 357, 1813, 2295, 2778 |
| BmrFI | CCNGG | 3 cut(s) | 1548, 1907, 1944 |
| BpiI | GAAGAC | 2 cut(s) | 701, 3165 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 445, 477 |
| BpmI | CTGGAG | 3 cut(s) | 1978, 2021, 2373 |
| Bpu14I | TTCGAA | 1 cut(s) | 2567 |
| BpuEI | CTTGAG | 2 cut(s) | 1109, 2479 |
| BpuMI | CCSGG | 1 cut(s) | 1548 |
| Bsa29I | ATCGAT | 1 cut(s) | 2317 |
| BsaAI | YACGTR | 1 cut(s) | 3075 |
| BsaHI | GRCGYC | 1 cut(s) | 2928 |
| BsaJI | CCNNGG | 3 cut(s) | 301, 1277, 1717 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 783, 813 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 273, 1808, 1880, 2227, 2228, 2376, 2377 |
| Bse1I | ACTGG | 8 cut(s) | 946, 1200, 1961, 2031, 2065, 2390, 2759, 3198 |
| Bse21I | CCTNAGG | 1 cut(s) | 3231 |
| Bse3DI | GCAATG | 3 cut(s) | 1350, 2072, 3059 |
| BseBI | CCWGG | 2 cut(s) | 1907, 1944 |
| BseCI | ATCGAT | 1 cut(s) | 2317 |
| BseDI | CCNNGG | 3 cut(s) | 301, 1277, 1717 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 273, 1808, 1880, 2227, 2228, 2376, 2377 |
| BseMI | GCAATG | 3 cut(s) | 1350, 2072, 3059 |
| BseMII | CTCAG | 5 cut(s) | 71, 1642, 2744, 2982, 3222 |
| BseNI | ACTGG | 8 cut(s) | 946, 1200, 1961, 2031, 2065, 2390, 2759, 3198 |
| BseRI | GAGGAG | 4 cut(s) | 25, 198, 1877, 2627 |
| BseXI | GCAGC | 8 cut(s) | 470, 485, 737, 2166, 2621, 2895, 2997, 3284 |
| BseYI | CCCAGC | 1 cut(s) | 962 |
| BsgI | GTGCAG | 2 cut(s) | 1604, 2996 |
| Bsh1236I | CGCG | 1 cut(s) | 2327 |
| BshFI | GGCC | 2 cut(s) | 337, 3313 |
| BshVI | ATCGAT | 1 cut(s) | 2317 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1095 |
| BsiHKCI | CYCGRG | 3 cut(s) | 499, 609, 1424 |
| BsiSI | CCGG | 2 cut(s) | 1548, 2297 |
| BslFI | GGGAC | 2 cut(s) | 2246, 2879 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 273, 1808, 1880, 2227, 2228, 2376, 2377 |
| BsmAI | GTCTC | 1 cut(s) | 1626 |
| BsmFI | GGGAC | 2 cut(s) | 2246, 2879 |
| BsmI | GAATGC | 4 cut(s) | 1182, 2001, 2381, 2441 |
| BsnI | GGCC | 2 cut(s) | 337, 3313 |
| BsoBI | CYCGRG | 3 cut(s) | 499, 609, 1424 |
| Bsp119I | TTCGAA | 1 cut(s) | 2567 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1095, 1548 |
| Bsp1407I | TGTACA | 1 cut(s) | 1778 |
| BspACI | CCGC | 7 cut(s) | 504, 549, 645, 684, 1414, 2325, 2527 |
| BspANI | GGCC | 2 cut(s) | 337, 3313 |
| BspCNI | CTCAG | 5 cut(s) | 72, 1641, 2743, 2983, 3223 |
| BspDI | ATCGAT | 1 cut(s) | 2317 |
| BspFNI | CGCG | 1 cut(s) | 2327 |
| BspHI | TCATGA | 2 cut(s) | 865, 1063 |
| BspLI | GGNNCC | 4 cut(s) | 357, 1813, 2295, 2778 |
| BspMAI | CTGCAG | 4 cut(s) | 2486, 2639, 3187, 3274 |
| BspPI | GGATC | 9 cut(s) | 232, 350, 363, 1773, 1806, 1819, 1917, 1956, 3006 |
| BspT104I | TTCGAA | 1 cut(s) | 2567 |
| BsrDI | GCAATG | 3 cut(s) | 1350, 2072, 3059 |
| BsrGI | TGTACA | 1 cut(s) | 1778 |
| BsrI | ACTGG | 8 cut(s) | 946, 1200, 1961, 2031, 2065, 2390, 2759, 3198 |
| BssECI | CCNNGG | 3 cut(s) | 301, 1277, 1717 |
| BssNI | GRCGYC | 1 cut(s) | 2928 |
| BssT1I | CCWWGG | 3 cut(s) | 301, 1277, 1717 |
| Bst2UI | CCWGG | 2 cut(s) | 1907, 1944 |
| Bst4CI | ACNGT | 6 cut(s) | 1149, 1162, 1566, 1836, 2112, 2826 |
| Bst6I | CTCTTC | 3 cut(s) | 534, 1500, 2714 |
| BstACI | GRCGYC | 1 cut(s) | 2928 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1591 |
| BstAUI | TGTACA | 1 cut(s) | 1778 |
| BstBAI | YACGTR | 1 cut(s) | 3075 |
| BstBI | TTCGAA | 1 cut(s) | 2567 |
| BstC8I | GCNNGC | 2 cut(s) | 1245, 1490 |
| BstDEI | CTNAG | 9 cut(s) | 80, 1628, 1753, 1769, 1841, 2730, 2991, 3231, 3240 |
| BstFNI | CGCG | 1 cut(s) | 2327 |
| BstH2I | RGCGCY | 1 cut(s) | 2418 |
| BstHHI | GCGC | 2 cut(s) | 2339, 2417 |
| BstMAI | GTCTC | 1 cut(s) | 1626 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1552, 1591, 2021, 3061 |
| BstNI | CCWGG | 2 cut(s) | 1907, 1944 |
| BstNSI | RCATGY | 2 cut(s) | 1492, 2981 |
| BstSCI | CCNGG | 3 cut(s) | 1546, 1905, 1942 |
| BstSFI | CTRYAG | 5 cut(s) | 1539, 2482, 2635, 3183, 3270 |
| BstUI | CGCG | 1 cut(s) | 2327 |
| BstV1I | GCAGC | 8 cut(s) | 470, 485, 737, 2166, 2621, 2895, 2997, 3284 |
| BstV2I | GAAGAC | 2 cut(s) | 701, 3165 |
| BstX2I | RGATCY | 6 cut(s) | 355, 1765, 1811, 1909, 1961, 2143 |
| BstYI | RGATCY | 6 cut(s) | 355, 1765, 1811, 1909, 1961, 2143 |
| Bsu15I | ATCGAT | 1 cut(s) | 2317 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3231 |
| BsuI | GTATCC | 2 cut(s) | 91, 1877 |
| BsuRI | GGCC | 2 cut(s) | 337, 3313 |
| BsuTUI | ATCGAT | 1 cut(s) | 2317 |
| BtrI | CACGTC | 1 cut(s) | 1735 |
| BtsIMutI | CAGTG | 3 cut(s) | 1193, 2024, 2058 |
| Cac8I | GCNNGC | 2 cut(s) | 1245, 1490 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2643 |
| CciI | TCATGA | 2 cut(s) | 865, 1063 |
| CfoI | GCGC | 2 cut(s) | 2339, 2417 |
| Cfr13I | GGNCC | 2 cut(s) | 943, 1721 |
| ClaI | ATCGAT | 1 cut(s) | 2317 |
| CseI | GACGC | 2 cut(s) | 2708, 3044 |
| Csp6I | GTAC | 4 cut(s) | 656, 1779, 2352, 2465 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 813, 848 |
| CviQI | GTAC | 4 cut(s) | 656, 1779, 2352, 2465 |
| DdeI | CTNAG | 9 cut(s) | 80, 1628, 1753, 1769, 1841, 2730, 2991, 3231, 3240 |
| DraI | TTTAAA | 2 cut(s) | 1264, 1788 |
| DraIII | CACNNNGTG | 1 cut(s) | 73 |
| EaeI | YGGCCR | 1 cut(s) | 335 |
| Eam1104I | CTCTTC | 3 cut(s) | 534, 1500, 2714 |
| EarI | CTCTTC | 3 cut(s) | 534, 1500, 2714 |
| EciI | GGCGGA | 2 cut(s) | 660, 699 |
| Ecl136II | GAGCTC | 1 cut(s) | 1093 |
| Eco130I | CCWWGG | 3 cut(s) | 301, 1277, 1717 |
| Eco24I | GRGCYC | 2 cut(s) | 1095, 1548 |
| Eco32I | GATATC | 1 cut(s) | 2093 |
| Eco47I | GGWCC | 2 cut(s) | 943, 1721 |
| Eco53kI | GAGCTC | 1 cut(s) | 1093 |
| Eco57I | CTGAAG | 1 cut(s) | 2259 |
| Eco81I | CCTNAGG | 1 cut(s) | 3231 |
| Eco88I | CYCGRG | 3 cut(s) | 499, 609, 1424 |
| EcoICRI | GAGCTC | 1 cut(s) | 1093 |
| EcoRI | GAATTC | 1 cut(s) | 1712 |
| EcoRII | CCWGG | 2 cut(s) | 1905, 1942 |
| EcoRV | GATATC | 1 cut(s) | 2093 |
| EcoT14I | CCWWGG | 3 cut(s) | 301, 1277, 1717 |
| EcoT22I | ATGCAT | 3 cut(s) | 265, 1494, 2441 |
| EcoT38I | GRGCYC | 2 cut(s) | 1095, 1548 |
| ErhI | CCWWGG | 3 cut(s) | 301, 1277, 1717 |
| FaqI | GGGAC | 2 cut(s) | 2246, 2879 |
| FauI | CCCGC | 1 cut(s) | 497 |
| FauNDI | CATATG | 1 cut(s) | 1623 |
| FbaI | TGATCA | 1 cut(s) | 2899 |
| FblI | GTMKAC | 1 cut(s) | 1538 |
| Fnu4HI | GCNGC | 9 cut(s) | 459, 474, 751, 2155, 2527, 2635, 2909, 3011, 3273 |
| FriOI | GRGCYC | 2 cut(s) | 1095, 1548 |
| Fsp4HI | GCNGC | 9 cut(s) | 459, 474, 751, 2155, 2527, 2635, 2909, 3011, 3273 |
| FspBI | CTAG | 8 cut(s) | 290, 602, 1070, 1278, 1718, 2312, 2349, 3276 |
| GlaI | GCGC | 2 cut(s) | 2338, 2416 |
| GluI | GCNGC | 9 cut(s) | 459, 474, 751, 2155, 2527, 2635, 2909, 3011, 3273 |
| GsaI | CCCAGC | 1 cut(s) | 966 |
| GsuI | CTGGAG | 3 cut(s) | 1978, 2021, 2373 |
| HaeII | RGCGCY | 1 cut(s) | 2418 |
| HaeIII | GGCC | 2 cut(s) | 337, 3313 |
| HapII | CCGG | 2 cut(s) | 1548, 2297 |
| HgaI | GACGC | 2 cut(s) | 2708, 3044 |
| HhaI | GCGC | 2 cut(s) | 2339, 2417 |
| Hin1I | GRCGYC | 1 cut(s) | 2928 |
| Hin6I | GCGC | 2 cut(s) | 2337, 2415 |
| HinP1I | GCGC | 2 cut(s) | 2337, 2415 |
| HincII | GTYRAC | 4 cut(s) | 154, 802, 925, 1954 |
| HindII | GTYRAC | 4 cut(s) | 154, 802, 925, 1954 |
| HindIII | AAGCTT | 2 cut(s) | 1823, 1895 |
| HpaII | CCGG | 2 cut(s) | 1548, 2297 |
| HphI | GGTGA | 9 cut(s) | 404, 454, 1562, 1670, 1790, 1862, 1895, 2314, 3187 |
| Hpy99I | CGWCG | 1 cut(s) | 2826 |
| HpyCH4III | ACNGT | 6 cut(s) | 1149, 1162, 1566, 1836, 2112, 2826 |
| HpyCH4IV | ACGT | 5 cut(s) | 366, 1734, 2928, 3074, 3162 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1552, 1591, 2021, 3061 |
| HpyF3I | CTNAG | 9 cut(s) | 80, 1628, 1753, 1769, 1841, 2730, 2991, 3231, 3240 |
| HpySE526I | ACGT | 5 cut(s) | 366, 1734, 2928, 3074, 3162 |
| Hsp92I | GRCGYC | 1 cut(s) | 2928 |
| HspAI | GCGC | 2 cut(s) | 2337, 2415 |
| Ksp22I | TGATCA | 1 cut(s) | 2899 |
| LmnI | GCTCC | 2 cut(s) | 2293, 2587 |
| Lsp1109I | GCAGC | 8 cut(s) | 470, 485, 737, 2166, 2621, 2895, 2997, 3284 |
| MaeI | CTAG | 8 cut(s) | 290, 602, 1070, 1278, 1718, 2312, 2349, 3276 |
| MaeII | ACGT | 5 cut(s) | 366, 1734, 2928, 3074, 3162 |
| MaeIII | GTNAC | 7 cut(s) | 983, 1073, 1153, 1409, 2118, 3265, 3302 |
| MfeI | CAATTG | 4 cut(s) | 11, 702, 726, 2016 |
| MflI | RGATCY | 6 cut(s) | 355, 1765, 1811, 1909, 1961, 2143 |
| MhlI | GDGCHC | 2 cut(s) | 1095, 1548 |
| MlyI | GAGTC | 7 cut(s) | 599, 1544, 2228, 2634, 2712, 3002, 3090 |
| MmeI | TCCRAC | 7 cut(s) | 1352, 1482, 1789, 1810, 1861, 2273, 2976 |
| Mph1103I | ATGCAT | 3 cut(s) | 265, 1494, 2441 |
| MroXI | GAANNNNTTC | 3 cut(s) | 204, 291, 2244 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1216, 1578, 1640, 2127, 2943 |
| MspA1I | CMGCKG | 2 cut(s) | 2793, 2990 |
| MspI | CCGG | 2 cut(s) | 1548, 2297 |
| MspR9I | CCNGG | 3 cut(s) | 1548, 1907, 1944 |
| MunI | CAATTG | 4 cut(s) | 11, 702, 726, 2016 |
| Mva1269I | GAATGC | 4 cut(s) | 1182, 2001, 2381, 2441 |
| MvaI | CCWGG | 2 cut(s) | 1907, 1944 |
| MvnI | CGCG | 1 cut(s) | 2327 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1552, 1591, 2021, 3061 |
| NciI | CCSGG | 1 cut(s) | 1548 |
| NdeI | CATATG | 1 cut(s) | 1623 |
| NlaIV | GGNNCC | 4 cut(s) | 357, 1813, 2295, 2778 |
| NmuCI | GTSAC | 4 cut(s) | 983, 1073, 1409, 3302 |
| NsiI | ATGCAT | 3 cut(s) | 265, 1494, 2441 |
| NspI | RCATGY | 2 cut(s) | 1492, 2981 |
| NspV | TTCGAA | 1 cut(s) | 2567 |
| PaeI | GCATGC | 1 cut(s) | 1492 |
| PagI | TCATGA | 2 cut(s) | 865, 1063 |
| PciI | ACATGT | 1 cut(s) | 2977 |
| PctI | GAATGC | 4 cut(s) | 1182, 2001, 2381, 2441 |
| PdmI | GAANNNNTTC | 3 cut(s) | 204, 291, 2244 |
| PflFI | GACNNNGTC | 1 cut(s) | 2643 |
| PkrI | GCNGC | 9 cut(s) | 460, 475, 752, 2156, 2528, 2636, 2910, 3012, 3274 |
| PleI | GAGTC | 7 cut(s) | 599, 1543, 2228, 2634, 2712, 3001, 3089 |
| PpsI | GAGTC | 7 cut(s) | 599, 1543, 2228, 2634, 2712, 3001, 3089 |
| Ppu21I | YACGTR | 1 cut(s) | 3075 |
| PscI | ACATGT | 1 cut(s) | 2977 |
| PshBI | ATTAAT | 1 cut(s) | 1977 |
| Psp124BI | GAGCTC | 1 cut(s) | 1095 |
| Psp6I | CCWGG | 2 cut(s) | 1905, 1942 |
| PspFI | CCCAGC | 1 cut(s) | 962 |
| PspGI | CCWGG | 2 cut(s) | 1905, 1942 |
| PspN4I | GGNNCC | 4 cut(s) | 357, 1813, 2295, 2778 |
| PspPI | GGNCC | 2 cut(s) | 943, 1721 |
| PstI | CTGCAG | 4 cut(s) | 2486, 2639, 3187, 3274 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2643 |
| PsuI | RGATCY | 6 cut(s) | 355, 1765, 1811, 1909, 1961, 2143 |
| PsyI | GACNNNGTC | 1 cut(s) | 2643 |
| PvuII | CAGCTG | 2 cut(s) | 2793, 2990 |
| RsaI | GTAC | 4 cut(s) | 657, 1780, 2353, 2466 |
| RsaNI | GTAC | 4 cut(s) | 656, 1779, 2352, 2465 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1216, 1578, 1640, 2127, 2943 |
| SacI | GAGCTC | 1 cut(s) | 1095 |
| SatI | GCNGC | 9 cut(s) | 459, 474, 751, 2155, 2527, 2635, 2909, 3011, 3273 |
| Sau96I | GGNCC | 2 cut(s) | 943, 1721 |
| ScaI | AGTACT | 1 cut(s) | 2353 |
| SchI | GAGTC | 7 cut(s) | 599, 1544, 2228, 2634, 2712, 3002, 3090 |
| ScrFI | CCNGG | 3 cut(s) | 1548, 1907, 1944 |
| SduI | GDGCHC | 2 cut(s) | 1095, 1548 |
| SfcI | CTRYAG | 5 cut(s) | 1539, 2482, 2635, 3183, 3270 |
| SfuI | TTCGAA | 1 cut(s) | 2567 |
| SinI | GGWCC | 2 cut(s) | 943, 1721 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1216, 1578, 1640, 2127, 2943 |
| SmlI | CTYRAG | 2 cut(s) | 1088, 2458 |
| SmoI | CTYRAG | 2 cut(s) | 1088, 2458 |
| SpeI | ACTAGT | 1 cut(s) | 289 |
| SphI | GCATGC | 1 cut(s) | 1492 |
| SsiI | CCGC | 7 cut(s) | 504, 549, 645, 684, 1414, 2325, 2527 |
| SspI | AATATT | 1 cut(s) | 814 |
| SspMI | CTAG | 8 cut(s) | 290, 602, 1070, 1278, 1718, 2312, 2349, 3276 |
| SstI | GAGCTC | 1 cut(s) | 1095 |
| StyD4I | CCNGG | 3 cut(s) | 1546, 1905, 1942 |
| StyI | CCWWGG | 3 cut(s) | 301, 1277, 1717 |
| TaaI | ACNGT | 6 cut(s) | 1149, 1162, 1566, 1836, 2112, 2826 |
| TaiI | ACGT | 5 cut(s) | 369, 1737, 2931, 3077, 3165 |
| TaqI | TCGA | 7 cut(s) | 1347, 2211, 2317, 2567, 2716, 2821, 3079 |
| TatI | WGTACW | 2 cut(s) | 1778, 2351 |
| TauI | GCSGC | 1 cut(s) | 2529 |
| TscAI | CASTG | 3 cut(s) | 1200, 2031, 2065 |
| TseFI | GTSAC | 4 cut(s) | 983, 1073, 1409, 3302 |
| TseI | GCWGC | 8 cut(s) | 458, 473, 750, 2154, 2634, 2908, 3010, 3272 |
| Tsp45I | GTSAC | 4 cut(s) | 983, 1073, 1409, 3302 |
| TspRI | CASTG | 3 cut(s) | 1200, 2031, 2065 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2643 |
| VpaK11BI | GGWCC | 2 cut(s) | 943, 1721 |
| VspI | ATTAAT | 1 cut(s) | 1977 |
| XceI | RCATGY | 2 cut(s) | 1492, 2981 |
| XmaJI | CCTAGG | 2 cut(s) | 1277, 1717 |
| XmiI | GTMKAC | 1 cut(s) | 1538 |
| XmnI | GAANNNNTTC | 3 cut(s) | 204, 291, 2244 |
| XspI | CTAG | 8 cut(s) | 290, 602, 1070, 1278, 1718, 2312, 2349, 3276 |
| ZraI | GACGTC | 1 cut(s) | 2929 |
| ZrmI | AGTACT | 1 cut(s) | 2353 |
| Zsp2I | ATGCAT | 3 cut(s) | 265, 1494, 2441 |