TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 21 - 182 | 5.1e-54 | TIR domain |
| TIR_2 | PF13676 | 23 - 119 | 4.6e-16 | TIR domain |
| NB-ARC | PF00931 | 199 - 371 | 6.7e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 442 - 513 | 1.1e-11 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 687 - 779 | 4.9e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 702 - 776 | 1.6e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_13 | PF23286 | 838 - 930 | 3e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 992, 1715 |
| Acc65I | GGTACC | 1 cut(s) | 369 |
| AccB1I | GGYRCC | 1 cut(s) | 369 |
| AccI | GTMKAC | 1 cut(s) | 3518 |
| AciI | CCGC | 6 cut(s) | 672, 2534, 2637, 2717, 2870, 3348 |
| AclI | AACGTT | 1 cut(s) | 1191 |
| AclWI | GGATC | 3 cut(s) | 347, 360, 1310 |
| AcoI | YGGCCR | 1 cut(s) | 332 |
| AcuI | CTGAAG | 2 cut(s) | 1563, 2973 |
| AcyI | GRCGYC | 1 cut(s) | 3113 |
| AfaI | GTAC | 4 cut(s) | 62, 371, 1440, 3150 |
| AflII | CTTAAG | 2 cut(s) | 614, 3580 |
| AgeI | ACCGGT | 1 cut(s) | 3521 |
| AjiI | CACGTC | 1 cut(s) | 56 |
| AjnI | CCWGG | 2 cut(s) | 864, 3357 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 308, 340, 2870, 2902, 3068, 3100 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 627, 659 |
| Alw21I | GWGCWC | 1 cut(s) | 3357 |
| Alw26I | GTCTC | 4 cut(s) | 600, 2590, 2867, 3437 |
| Alw44I | GTGCAC | 1 cut(s) | 3353 |
| AlwI | GGATC | 3 cut(s) | 347, 360, 1310 |
| AoxI | GGCC | 8 cut(s) | 112, 332, 781, 1050, 1056, 1171, 1452, 1781 |
| ApaLI | GTGCAC | 1 cut(s) | 3353 |
| ApeKI | GCWGC | 7 cut(s) | 461, 978, 2133, 3101, 3220, 3345, 3420 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 2331, 2363, 2866, 2898, 3103, 3135 |
| AseI | ATTAAT | 2 cut(s) | 1722, 3162 |
| AsiGI | ACCGGT | 1 cut(s) | 3521 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1100, 1524 |
| Asp718I | GGTACC | 1 cut(s) | 369 |
| AspS9I | GGNCC | 3 cut(s) | 826, 1453, 1942 |
| AsuC2I | CCSGG | 1 cut(s) | 2156 |
| AsuHPI | GGTGA | 5 cut(s) | 98, 401, 1530, 2492, 2902 |
| AsuII | TTCGAA | 1 cut(s) | 1094 |
| AvaII | GGWCC | 2 cut(s) | 826, 1942 |
| BaeGI | GKGCMC | 1 cut(s) | 3357 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1140, 1173 |
| BamHI | GGATCC | 1 cut(s) | 352 |
| BanI | GGYRCC | 1 cut(s) | 369 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 368, 400, 2375, 2407 |
| BauI | CACGAG | 1 cut(s) | 597 |
| BbsI | GAAGAC | 1 cut(s) | 2624 |
| Bbv12I | GWGCWC | 1 cut(s) | 3357 |
| BbvI | GCAGC | 7 cut(s) | 473, 990, 2120, 3088, 3207, 3332, 3407 |
| BccI | CCATC | 5 cut(s) | 432, 783, 1241, 2167, 2219 |
| BceAI | ACGGC | 4 cut(s) | 462, 1186, 2455, 2541 |
| BciT130I | CCWGG | 2 cut(s) | 866, 3359 |
| BciVI | GTATCC | 4 cut(s) | 85, 588, 786, 3445 |
| BclI | TGATCA | 3 cut(s) | 1030, 2491, 2899 |
| BcnI | CCSGG | 1 cut(s) | 2156 |
| BcoDI | GTCTC | 4 cut(s) | 600, 2590, 2867, 3437 |
| BfaI | CTAG | 4 cut(s) | 785, 1391, 1400, 2202 |
| BfmI | CTRYAG | 1 cut(s) | 1422 |
| BfrI | CTTAAG | 2 cut(s) | 614, 3580 |
| BfuI | GTATCC | 4 cut(s) | 85, 588, 786, 3445 |
| BglII | AGATCT | 1 cut(s) | 1472 |
| BisI | GCNGC | 7 cut(s) | 462, 979, 2134, 3102, 3221, 3346, 3421 |
| BlsI | GCNGC | 7 cut(s) | 463, 980, 2135, 3103, 3222, 3347, 3422 |
| BmcAI | AGTACT | 2 cut(s) | 1440, 3150 |
| Bme1390I | CCNGG | 3 cut(s) | 866, 2156, 3359 |
| Bme18I | GGWCC | 2 cut(s) | 826, 1942 |
| BmgBI | CACGTC | 1 cut(s) | 56 |
| BmgT120I | GGNCC | 3 cut(s) | 826, 1453, 1942 |
| BmiI | GGNNCC | 6 cut(s) | 354, 371, 827, 1944, 3282, 3333 |
| BmrFI | CCNGG | 3 cut(s) | 866, 2156, 3359 |
| BpiI | GAAGAC | 1 cut(s) | 2624 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 433, 465 |
| BpmI | CTGGAG | 4 cut(s) | 546, 1523, 1758, 2165 |
| Bpu14I | TTCGAA | 1 cut(s) | 1094 |
| BpuEI | CTTGAG | 4 cut(s) | 250, 1868, 2060, 2698 |
| BpuMI | CCSGG | 1 cut(s) | 2156 |
| Bsa29I | ATCGAT | 1 cut(s) | 3479 |
| BsaBI | GATNNNNATC | 3 cut(s) | 233, 1587, 2901 |
| BsaHI | GRCGYC | 1 cut(s) | 3113 |
| BsaI | GGTCTC | 1 cut(s) | 3437 |
| BsaJI | CCNNGG | 2 cut(s) | 1053, 1059 |
| BsaWI | WCCGGW | 2 cut(s) | 828, 3521 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2833, 2863 |
| Bse118I | RCCGGY | 2 cut(s) | 334, 3521 |
| Bse1I | ACTGG | 3 cut(s) | 720, 934, 1741 |
| Bse3DI | GCAATG | 2 cut(s) | 308, 1341 |
| Bse8I | GATNNNNATC | 3 cut(s) | 233, 1587, 2901 |
| BseBI | CCWGG | 2 cut(s) | 866, 3359 |
| BseCI | ATCGAT | 1 cut(s) | 3479 |
| BseDI | CCNNGG | 2 cut(s) | 1053, 1059 |
| BseGI | GGATG | 7 cut(s) | 260, 286, 463, 1588, 2014, 2178, 2200 |
| BseJI | GATNNNNATC | 3 cut(s) | 233, 1587, 2901 |
| BseMI | GCAATG | 2 cut(s) | 308, 1341 |
| BseMII | CTCAG | 1 cut(s) | 2957 |
| BseNI | ACTGG | 3 cut(s) | 720, 934, 1741 |
| BseRI | GAGGAG | 1 cut(s) | 2924 |
| BseSI | GKGCMC | 1 cut(s) | 3357 |
| BseXI | GCAGC | 7 cut(s) | 473, 990, 2120, 3088, 3207, 3332, 3407 |
| BseYI | CCCAGC | 2 cut(s) | 1792, 2303 |
| BsgI | GTGCAG | 1 cut(s) | 183 |
| BshFI | GGCC | 8 cut(s) | 114, 334, 783, 1052, 1058, 1173, 1454, 1783 |
| BshNI | GGYRCC | 1 cut(s) | 369 |
| BshTI | ACCGGT | 1 cut(s) | 3521 |
| BshVI | ATCGAT | 1 cut(s) | 3479 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3357 |
| BsiSI | CCGG | 5 cut(s) | 335, 829, 2156, 2839, 3522 |
| BsiWI | CGTACG | 1 cut(s) | 60 |
| BslFI | GGGAC | 2 cut(s) | 839, 1928 |
| BsmAI | GTCTC | 4 cut(s) | 600, 2590, 2867, 3437 |
| BsmBI | CGTCTC | 1 cut(s) | 2867 |
| BsmFI | GGGAC | 2 cut(s) | 839, 1928 |
| BsmI | GAATGC | 3 cut(s) | 1102, 1965, 2546 |
| BsnI | GGCC | 8 cut(s) | 114, 334, 783, 1052, 1058, 1173, 1454, 1783 |
| Bso31I | GGTCTC | 1 cut(s) | 3437 |
| Bsp119I | TTCGAA | 1 cut(s) | 1094 |
| Bsp1286I | GDGCHC | 1 cut(s) | 3357 |
| Bsp143I | GATC | 7 cut(s) | 352, 1030, 1315, 1472, 2491, 2899, 2917 |
| BspACI | CCGC | 6 cut(s) | 672, 2534, 2637, 2717, 2870, 3348 |
| BspANI | GGCC | 8 cut(s) | 114, 334, 783, 1052, 1058, 1173, 1454, 1783 |
| BspCNI | CTCAG | 1 cut(s) | 2956 |
| BspDI | ATCGAT | 1 cut(s) | 3479 |
| BspHI | TCATGA | 1 cut(s) | 1576 |
| BspLI | GGNNCC | 6 cut(s) | 354, 371, 827, 1944, 3282, 3333 |
| BspPI | GGATC | 3 cut(s) | 347, 360, 1310 |
| BspQI | GCTCTTC | 1 cut(s) | 162 |
| BspT104I | TTCGAA | 1 cut(s) | 1094 |
| BspT107I | GGYRCC | 1 cut(s) | 369 |
| BspTI | CTTAAG | 2 cut(s) | 614, 3580 |
| BspTNI | GGTCTC | 1 cut(s) | 3437 |
| BsrDI | GCAATG | 2 cut(s) | 308, 1341 |
| BsrFI | RCCGGY | 2 cut(s) | 334, 3521 |
| BsrI | ACTGG | 3 cut(s) | 720, 934, 1741 |
| BssAI | RCCGGY | 2 cut(s) | 334, 3521 |
| BssECI | CCNNGG | 2 cut(s) | 1053, 1059 |
| BssMI | GATC | 7 cut(s) | 352, 1030, 1315, 1472, 2491, 2899, 2917 |
| BssNAI | GTATAC | 1 cut(s) | 3519 |
| BssNI | GRCGYC | 1 cut(s) | 3113 |
| BssSI | CACGAG | 1 cut(s) | 597 |
| BssT1I | CCWWGG | 2 cut(s) | 1053, 1059 |
| Bst1107I | GTATAC | 1 cut(s) | 3519 |
| Bst2BI | CACGAG | 1 cut(s) | 597 |
| Bst2UI | CCWGG | 2 cut(s) | 866, 3359 |
| Bst4CI | ACNGT | 8 cut(s) | 125, 369, 389, 1994, 2396, 2480, 2599, 3033 |
| Bst6I | CTCTTC | 7 cut(s) | 40, 162, 2115, 2927, 2934, 2944, 3372 |
| BstACI | GRCGYC | 1 cut(s) | 3113 |
| BstAFI | CTTAAG | 2 cut(s) | 614, 3580 |
| BstBI | TTCGAA | 1 cut(s) | 1094 |
| BstC8I | GCNNGC | 5 cut(s) | 1013, 1236, 1386, 1552, 2641 |
| BstDEI | CTNAG | 4 cut(s) | 173, 904, 1910, 2943 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1937 |
| BstF5I | GGATG | 7 cut(s) | 260, 286, 463, 1588, 2014, 2178, 2200 |
| BstKTI | GATC | 7 cut(s) | 355, 1033, 1318, 1475, 2494, 2902, 2920 |
| BstMAI | GTCTC | 4 cut(s) | 600, 2590, 2867, 3437 |
| BstMBI | GATC | 7 cut(s) | 352, 1030, 1315, 1472, 2491, 2899, 2917 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 678, 1394, 1498, 1560, 1846, 2003 |
| BstNI | CCWGG | 2 cut(s) | 866, 3359 |
| BstNSI | RCATGY | 1 cut(s) | 1350 |
| BstSCI | CCNGG | 3 cut(s) | 864, 2154, 3357 |
| BstSFI | CTRYAG | 1 cut(s) | 1422 |
| BstSLI | GKGCMC | 1 cut(s) | 3357 |
| BstV1I | GCAGC | 7 cut(s) | 473, 990, 2120, 3088, 3207, 3332, 3407 |
| BstV2I | GAAGAC | 1 cut(s) | 2624 |
| BstX2I | RGATCY | 3 cut(s) | 352, 1315, 1472 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1060 |
| BstYI | RGATCY | 3 cut(s) | 352, 1315, 1472 |
| BstZ17I | GTATAC | 1 cut(s) | 3519 |
| Bsu15I | ATCGAT | 1 cut(s) | 3479 |
| BsuI | GTATCC | 4 cut(s) | 85, 588, 786, 3445 |
| BsuRI | GGCC | 8 cut(s) | 114, 334, 783, 1052, 1058, 1173, 1454, 1783 |
| BsuTUI | ATCGAT | 1 cut(s) | 3479 |
| BtrI | CACGTC | 1 cut(s) | 56 |
| BtsCI | GGATG | 7 cut(s) | 260, 286, 463, 1588, 2014, 2178, 2200 |
| BtsIMutI | CAGTG | 2 cut(s) | 1734, 2604 |
| Cac8I | GCNNGC | 5 cut(s) | 1013, 1236, 1386, 1552, 2641 |
| CciI | TCATGA | 1 cut(s) | 1576 |
| Cfr10I | RCCGGY | 2 cut(s) | 334, 3521 |
| Cfr13I | GGNCC | 3 cut(s) | 826, 1453, 1942 |
| ClaI | ATCGAT | 1 cut(s) | 3479 |
| CseI | GACGC | 3 cut(s) | 3121, 3260, 3407 |
| CsiI | ACCWGGT | 1 cut(s) | 3357 |
| Csp6I | GTAC | 4 cut(s) | 61, 370, 1439, 3149 |
| CspAI | ACCGGT | 1 cut(s) | 3521 |
| CviQI | GTAC | 4 cut(s) | 61, 370, 1439, 3149 |
| DdeI | CTNAG | 4 cut(s) | 173, 904, 1910, 2943 |
| DpnI | GATC | 7 cut(s) | 354, 1032, 1317, 1474, 2493, 2901, 2919 |
| DpnII | GATC | 7 cut(s) | 352, 1030, 1315, 1472, 2491, 2899, 2917 |
| DraI | TTTAAA | 4 cut(s) | 564, 1687, 1986, 3171 |
| EaeI | YGGCCR | 1 cut(s) | 332 |
| Eam1104I | CTCTTC | 7 cut(s) | 40, 162, 2115, 2927, 2934, 2944, 3372 |
| EarI | CTCTTC | 7 cut(s) | 40, 162, 2115, 2927, 2934, 2944, 3372 |
| EciI | GGCGGA | 2 cut(s) | 2706, 2885 |
| Eco130I | CCWWGG | 2 cut(s) | 1053, 1059 |
| Eco147I | AGGCCT | 2 cut(s) | 783, 1058 |
| Eco31I | GGTCTC | 1 cut(s) | 3437 |
| Eco32I | GATATC | 1 cut(s) | 2240 |
| Eco47I | GGWCC | 2 cut(s) | 826, 1942 |
| Eco57I | CTGAAG | 2 cut(s) | 1563, 2973 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1937 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1453, 1942 |
| EcoRI | GAATTC | 1 cut(s) | 2048 |
| EcoRII | CCWGG | 2 cut(s) | 864, 3357 |
| EcoRV | GATATC | 1 cut(s) | 2240 |
| EcoT14I | CCWWGG | 2 cut(s) | 1053, 1059 |
| EcoT22I | ATGCAT | 2 cut(s) | 1309, 1494 |
| ErhI | CCWWGG | 2 cut(s) | 1053, 1059 |
| Esp3I | CGTCTC | 1 cut(s) | 2867 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 597, 629, 2660, 2692 |
| FaqI | GGGAC | 2 cut(s) | 839, 1928 |
| FauI | CCCGC | 3 cut(s) | 665, 2527, 2644 |
| FbaI | TGATCA | 3 cut(s) | 1030, 2491, 2899 |
| FblI | GTMKAC | 1 cut(s) | 3518 |
| Fnu4HI | GCNGC | 7 cut(s) | 462, 979, 2134, 3102, 3221, 3346, 3421 |
| FokI | GGATG | 7 cut(s) | 247, 293, 470, 1595, 2001, 2185, 2207 |
| Fsp4HI | GCNGC | 7 cut(s) | 462, 979, 2134, 3102, 3221, 3346, 3421 |
| FspBI | CTAG | 4 cut(s) | 785, 1391, 1400, 2202 |
| GluI | GCNGC | 7 cut(s) | 462, 979, 2134, 3102, 3221, 3346, 3421 |
| GsaI | CCCAGC | 2 cut(s) | 1796, 2307 |
| GsuI | CTGGAG | 4 cut(s) | 546, 1523, 1758, 2165 |
| HaeIII | GGCC | 8 cut(s) | 114, 334, 783, 1052, 1058, 1173, 1454, 1783 |
| HapII | CCGG | 5 cut(s) | 335, 829, 2156, 2839, 3522 |
| HgaI | GACGC | 3 cut(s) | 3121, 3260, 3407 |
| Hin1I | GRCGYC | 1 cut(s) | 3113 |
| HincII | GTYRAC | 2 cut(s) | 2098, 2778 |
| HindII | GTYRAC | 2 cut(s) | 2098, 2778 |
| HindIII | AAGCTT | 3 cut(s) | 617, 2039, 2669 |
| HpaI | GTTAAC | 1 cut(s) | 2778 |
| HpaII | CCGG | 5 cut(s) | 335, 829, 2156, 2839, 3522 |
| HphI | GGTGA | 5 cut(s) | 98, 401, 1530, 2492, 2902 |
| Hpy166II | GTNNAC | 9 cut(s) | 480, 706, 1189, 1202, 1734, 2098, 2778, 3355, 3519 |
| Hpy8I | GTNNAC | 9 cut(s) | 480, 706, 1189, 1202, 1734, 2098, 2778, 3355, 3519 |
| Hpy99I | CGWCG | 2 cut(s) | 494, 3401 |
| HpyCH4III | ACNGT | 8 cut(s) | 125, 369, 389, 1994, 2396, 2480, 2599, 3033 |
| HpyCH4IV | ACGT | 6 cut(s) | 55, 553, 1191, 1558, 2414, 2521 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 678, 1394, 1498, 1560, 1846, 2003 |
| HpyF3I | CTNAG | 4 cut(s) | 173, 904, 1910, 2943 |
| HpySE526I | ACGT | 6 cut(s) | 55, 553, 1191, 1558, 2414, 2521 |
| Hsp92I | GRCGYC | 1 cut(s) | 3113 |
| KpnI | GGTACC | 1 cut(s) | 373 |
| Ksp22I | TGATCA | 3 cut(s) | 1030, 2491, 2899 |
| KspAI | GTTAAC | 1 cut(s) | 2778 |
| Kzo9I | GATC | 7 cut(s) | 352, 1030, 1315, 1472, 2491, 2899, 2917 |
| LguI | GCTCTTC | 1 cut(s) | 162 |
| LmnI | GCTCC | 1 cut(s) | 2710 |
| Lsp1109I | GCAGC | 7 cut(s) | 473, 990, 2120, 3088, 3207, 3332, 3407 |
| MabI | ACCWGGT | 1 cut(s) | 3357 |
| MaeI | CTAG | 4 cut(s) | 785, 1391, 1400, 2202 |
| MaeII | ACGT | 6 cut(s) | 55, 553, 1191, 1558, 2414, 2521 |
| MaeIII | GTNAC | 5 cut(s) | 1250, 1536, 2522, 2744, 2849 |
| MalI | GATC | 7 cut(s) | 354, 1032, 1317, 1474, 2493, 2901, 2919 |
| MboI | GATC | 7 cut(s) | 352, 1030, 1315, 1472, 2491, 2899, 2917 |
| MfeI | CAATTG | 8 cut(s) | 213, 323, 690, 714, 1143, 1763, 2232, 2833 |
| MflI | RGATCY | 3 cut(s) | 352, 1315, 1472 |
| MhlI | GDGCHC | 1 cut(s) | 3357 |
| MlyI | GAGTC | 7 cut(s) | 602, 1490, 1544, 1875, 2334, 3202, 3262 |
| MmeI | TCCRAC | 5 cut(s) | 565, 918, 2435, 3258, 3420 |
| Mph1103I | ATGCAT | 2 cut(s) | 1309, 1494 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1100, 1524 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1581 |
| MspCI | CTTAAG | 2 cut(s) | 614, 3580 |
| MspI | CCGG | 5 cut(s) | 335, 829, 2156, 2839, 3522 |
| MspR9I | CCNGG | 3 cut(s) | 866, 2156, 3359 |
| MunI | CAATTG | 8 cut(s) | 213, 323, 690, 714, 1143, 1763, 2232, 2833 |
| Mva1269I | GAATGC | 3 cut(s) | 1102, 1965, 2546 |
| MvaI | CCWGG | 2 cut(s) | 866, 3359 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 678, 1394, 1498, 1560, 1846, 2003 |
| NciI | CCSGG | 1 cut(s) | 2156 |
| NdeII | GATC | 7 cut(s) | 352, 1030, 1315, 1472, 2491, 2899, 2917 |
| NlaIV | GGNNCC | 6 cut(s) | 354, 371, 827, 1944, 3282, 3333 |
| NmeAIII | GCCGAG | 1 cut(s) | 2032 |
| NmuCI | GTSAC | 3 cut(s) | 1536, 2744, 2849 |
| NsiI | ATGCAT | 2 cut(s) | 1309, 1494 |
| NspI | RCATGY | 1 cut(s) | 1350 |
| NspV | TTCGAA | 1 cut(s) | 1094 |
| PagI | TCATGA | 1 cut(s) | 1576 |
| PceI | AGGCCT | 2 cut(s) | 783, 1058 |
| PciSI | GCTCTTC | 1 cut(s) | 162 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1864, 2484 |
| PctI | GAATGC | 3 cut(s) | 1102, 1965, 2546 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1100, 1524 |
| PfeI | GAWTC | 8 cut(s) | 17, 144, 417, 861, 1770, 1788, 3126, 3203 |
| Pfl23II | CGTACG | 1 cut(s) | 60 |
| PfoI | TCCNGGA | 1 cut(s) | 2154 |
| PinAI | ACCGGT | 1 cut(s) | 3521 |
| PkrI | GCNGC | 7 cut(s) | 463, 980, 2135, 3103, 3222, 3347, 3422 |
| PleI | GAGTC | 7 cut(s) | 601, 1490, 1543, 1875, 2334, 3202, 3261 |
| PpsI | GAGTC | 7 cut(s) | 601, 1490, 1543, 1875, 2334, 3202, 3261 |
| PpuMI | RGGWCCY | 1 cut(s) | 1942 |
| PshBI | ATTAAT | 2 cut(s) | 1722, 3162 |
| PsiI | TTATAA | 2 cut(s) | 992, 1715 |
| Psp1406I | AACGTT | 1 cut(s) | 1191 |
| Psp5II | RGGWCCY | 1 cut(s) | 1942 |
| Psp6I | CCWGG | 2 cut(s) | 864, 3357 |
| PspFI | CCCAGC | 2 cut(s) | 1792, 2303 |
| PspGI | CCWGG | 2 cut(s) | 864, 3357 |
| PspLI | CGTACG | 1 cut(s) | 60 |
| PspN4I | GGNNCC | 6 cut(s) | 354, 371, 827, 1944, 3282, 3333 |
| PspPI | GGNCC | 3 cut(s) | 826, 1453, 1942 |
| PspPPI | RGGWCCY | 1 cut(s) | 1942 |
| PsuI | RGATCY | 3 cut(s) | 352, 1315, 1472 |
| RsaI | GTAC | 4 cut(s) | 62, 371, 1440, 3150 |
| RsaNI | GTAC | 4 cut(s) | 61, 370, 1439, 3149 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1581 |
| SapI | GCTCTTC | 1 cut(s) | 162 |
| SatI | GCNGC | 7 cut(s) | 462, 979, 2134, 3102, 3221, 3346, 3421 |
| Sau3AI | GATC | 7 cut(s) | 352, 1030, 1315, 1472, 2491, 2899, 2917 |
| Sau96I | GGNCC | 3 cut(s) | 826, 1453, 1942 |
| ScaI | AGTACT | 2 cut(s) | 1440, 3150 |
| SchI | GAGTC | 7 cut(s) | 602, 1490, 1544, 1875, 2334, 3202, 3262 |
| ScrFI | CCNGG | 3 cut(s) | 866, 2156, 3359 |
| SduI | GDGCHC | 1 cut(s) | 3357 |
| SexAI | ACCWGGT | 1 cut(s) | 3357 |
| SfcI | CTRYAG | 1 cut(s) | 1422 |
| SfuI | TTCGAA | 1 cut(s) | 1094 |
| SinI | GGWCC | 2 cut(s) | 826, 1942 |
| SmiI | ATTTAAAT | 2 cut(s) | 564, 1986 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1581 |
| SmlI | CTYRAG | 6 cut(s) | 265, 614, 1883, 2075, 2677, 3580 |
| SmoI | CTYRAG | 6 cut(s) | 265, 614, 1883, 2075, 2677, 3580 |
| SseBI | AGGCCT | 2 cut(s) | 783, 1058 |
| SsiI | CCGC | 6 cut(s) | 672, 2534, 2637, 2717, 2870, 3348 |
| SspI | AATATT | 1 cut(s) | 2623 |
| SspMI | CTAG | 4 cut(s) | 785, 1391, 1400, 2202 |
| StuI | AGGCCT | 2 cut(s) | 783, 1058 |
| StyD4I | CCNGG | 3 cut(s) | 864, 2154, 3357 |
| StyI | CCWWGG | 2 cut(s) | 1053, 1059 |
| SwaI | ATTTAAAT | 2 cut(s) | 564, 1986 |
| TaaI | ACNGT | 8 cut(s) | 125, 369, 389, 1994, 2396, 2480, 2599, 3033 |
| TaiI | ACGT | 6 cut(s) | 58, 556, 1194, 1561, 2417, 2524 |
| TaqII | GACCGA | 2 cut(s) | 860, 1616 |
| TatI | WGTACW | 2 cut(s) | 1438, 3148 |
| TfiI | GAWTC | 8 cut(s) | 17, 144, 417, 861, 1770, 1788, 3126, 3203 |
| TscAI | CASTG | 2 cut(s) | 1741, 2604 |
| TseFI | GTSAC | 3 cut(s) | 1536, 2744, 2849 |
| TseI | GCWGC | 7 cut(s) | 461, 978, 2133, 3101, 3220, 3345, 3420 |
| Tsp45I | GTSAC | 3 cut(s) | 1536, 2744, 2849 |
| TspGWI | ACGGA | 6 cut(s) | 29, 48, 1308, 3222, 3246, 3264 |
| TspRI | CASTG | 2 cut(s) | 1741, 2604 |
| Vha464I | CTTAAG | 2 cut(s) | 614, 3580 |
| VneI | GTGCAC | 1 cut(s) | 3353 |
| VpaK11BI | GGWCC | 2 cut(s) | 826, 1942 |
| VspI | ATTAAT | 2 cut(s) | 1722, 3162 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1937 |
| XbaI | TCTAGA | 2 cut(s) | 1399, 2201 |
| XceI | RCATGY | 1 cut(s) | 1350 |
| XmiI | GTMKAC | 1 cut(s) | 3518 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1100, 1524 |
| XspI | CTAG | 4 cut(s) | 785, 1391, 1400, 2202 |
| ZrmI | AGTACT | 2 cut(s) | 1440, 3150 |
| Zsp2I | ATGCAT | 2 cut(s) | 1309, 1494 |