TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 105 - 269 | 1.4e-51 | TIR domain |
| TIR_2 | PF13676 | 107 - 201 | 1.2e-13 | TIR domain |
| NB-ARC | PF00931 | 285 - 456 | 1.5e-19 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 527 - 592 | 1e-10 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_EndoS | PF23952 | 692 - 774 | 1e-05 | Endo-beta-N-acetylglucosaminidase EndoS LRR domain |
| LRR_14 | PF23598 | 765 - 859 | 1.7e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 782 - 997 | 6.5e-18 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1952 |
| AatII | GACGTC | 1 cut(s) | 3501 |
| Acc36I | ACCTGC | 1 cut(s) | 178 |
| AccB1I | GGYRCC | 3 cut(s) | 618, 2602, 3460 |
| AccBSI | CCGCTC | 1 cut(s) | 2542 |
| AccI | GTMKAC | 2 cut(s) | 198, 3454 |
| AccII | CGCG | 4 cut(s) | 65, 1416, 2370, 2514 |
| AccIII | TCCGGA | 1 cut(s) | 2893 |
| AclWI | GGATC | 6 cut(s) | 236, 538, 1646, 1659, 2173, 2275 |
| AcoI | YGGCCR | 3 cut(s) | 96, 132, 361 |
| AcuI | CTGAAG | 5 cut(s) | 47, 242, 1008, 2137, 2658 |
| AcyI | GRCGYC | 2 cut(s) | 2603, 3498 |
| AflII | CTTAAG | 1 cut(s) | 2315 |
| AflIII | ACRYGT | 1 cut(s) | 1414 |
| AgeI | ACCGGT | 1 cut(s) | 3457 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3380 |
| AhlI | ACTAGT | 2 cut(s) | 574, 3361 |
| AjnI | CCWGG | 7 cut(s) | 152, 192, 1122, 1885, 2020, 3006, 3505 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2599, 2631 |
| AleI | CACNNNNGTG | 1 cut(s) | 2459 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 885, 917 |
| Alw21I | GWGCWC | 1 cut(s) | 2079 |
| Alw26I | GTCTC | 7 cut(s) | 858, 1703, 2374, 2997, 3022, 3138, 3367 |
| AlwI | GGATC | 6 cut(s) | 236, 538, 1646, 1659, 2173, 2275 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2690 |
| Ama87I | CYCGRG | 1 cut(s) | 3602 |
| Aor13HI | TCCGGA | 1 cut(s) | 2893 |
| ApeKI | GCWGC | 6 cut(s) | 568, 1019, 1236, 2373, 3403, 3528 |
| AseI | ATTAAT | 1 cut(s) | 2840 |
| AsiGI | ACCGGT | 1 cut(s) | 3457 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1355, 1587, 3264 |
| AspLEI | GCGC | 2 cut(s) | 2289, 2605 |
| AspS9I | GGNCC | 8 cut(s) | 52, 128, 190, 582, 1540, 1693, 3515, 3656 |
| AsuC2I | CCSGG | 1 cut(s) | 1661 |
| AsuHPI | GGTGA | 8 cut(s) | 199, 350, 650, 700, 1138, 1274, 1767, 2938 |
| AsuII | TTCGAA | 2 cut(s) | 473, 3339 |
| AvaI | CYCGRG | 1 cut(s) | 3602 |
| AvaII | GGWCC | 4 cut(s) | 52, 190, 1540, 3515 |
| AxyI | CCTNAGG | 1 cut(s) | 514 |
| BaeGI | GKGCMC | 1 cut(s) | 756 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1395, 1428, 1513, 1546 |
| BalI | TGGCCA | 2 cut(s) | 98, 363 |
| BamHI | GGATCC | 1 cut(s) | 1651 |
| BanI | GGYRCC | 3 cut(s) | 618, 2602, 3460 |
| BanII | GRGCYC | 2 cut(s) | 1853, 2079 |
| BauI | CACGAG | 2 cut(s) | 92, 855 |
| BbsI | GAAGAC | 1 cut(s) | 2810 |
| Bbv12I | GWGCWC | 1 cut(s) | 2079 |
| BbvI | GCAGC | 6 cut(s) | 580, 1031, 1248, 2360, 3390, 3515 |
| BccI | CCATC | 7 cut(s) | 227, 690, 1041, 2053, 2407, 2459, 3416 |
| BceAI | ACGGC | 3 cut(s) | 720, 2683, 3643 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3028, 3062 |
| BciT130I | CCWGG | 7 cut(s) | 154, 194, 1124, 1887, 2022, 3008, 3507 |
| BciVI | GTATCC | 2 cut(s) | 846, 1541 |
| BclI | TGATCA | 2 cut(s) | 2692, 2764 |
| BcnI | CCSGG | 1 cut(s) | 1661 |
| BcoDI | GTCTC | 7 cut(s) | 858, 1703, 2374, 2997, 3022, 3138, 3367 |
| BcuI | ACTAGT | 2 cut(s) | 574, 3361 |
| BfaI | CTAG | 7 cut(s) | 575, 647, 1043, 1646, 3197, 3362, 3542 |
| BfmI | CTRYAG | 1 cut(s) | 3640 |
| BfoI | RGCGCY | 1 cut(s) | 2606 |
| BfrI | CTTAAG | 1 cut(s) | 2315 |
| BfuAI | ACCTGC | 1 cut(s) | 178 |
| BfuI | GTATCC | 2 cut(s) | 846, 1541 |
| BglII | AGATCT | 1 cut(s) | 1074 |
| BlpI | GCTNAGC | 1 cut(s) | 2543 |
| BmcAI | AGTACT | 4 cut(s) | 277, 1680, 3240, 3360 |
| Bme1390I | CCNGG | 8 cut(s) | 154, 194, 1124, 1661, 1887, 2022, 3008, 3507 |
| Bme18I | GGWCC | 4 cut(s) | 52, 190, 1540, 3515 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3380 |
| BmeT110I | CYCGRG | 1 cut(s) | 3602 |
| BmgT120I | GGNCC | 8 cut(s) | 52, 128, 190, 582, 1540, 1693, 3515, 3656 |
| BmrFI | CCNGG | 8 cut(s) | 154, 194, 1124, 1661, 1887, 2022, 3008, 3507 |
| BpiI | GAAGAC | 1 cut(s) | 2810 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 691, 723 |
| BpmI | CTGGAG | 5 cut(s) | 1230, 1760, 1995, 2405, 3046 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2543 |
| Bpu14I | TTCGAA | 2 cut(s) | 473, 3339 |
| BpuEI | CTTGAG | 6 cut(s) | 440, 893, 1927, 2105, 2294, 3653 |
| BpuMI | CCSGG | 1 cut(s) | 1661 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1479, 3099 |
| BsaHI | GRCGYC | 2 cut(s) | 2603, 3498 |
| BsaI | GGTCTC | 1 cut(s) | 2997 |
| BsaJI | CCNNGG | 4 cut(s) | 152, 210, 1308, 2421 |
| BsaWI | WCCGGW | 2 cut(s) | 2893, 3457 |
| Bse118I | RCCGGY | 2 cut(s) | 130, 3457 |
| Bse1I | ACTGG | 8 cut(s) | 364, 839, 1192, 1221, 1717, 2388, 2604, 3309 |
| Bse21I | CCTNAGG | 1 cut(s) | 514 |
| Bse3DI | GCAATG | 2 cut(s) | 1596, 3700 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1479, 3099 |
| BseAI | TCCGGA | 1 cut(s) | 2893 |
| BseBI | CCWGG | 7 cut(s) | 154, 194, 1124, 1887, 2022, 3008, 3507 |
| BseDI | CCNNGG | 4 cut(s) | 152, 210, 1308, 2421 |
| BseGI | GGATG | 9 cut(s) | 509, 535, 607, 721, 1825, 2045, 2418, 2522, 3490 |
| BseJI | GATNNNNATC | 2 cut(s) | 1479, 3099 |
| BseMI | GCAATG | 2 cut(s) | 1596, 3700 |
| BseMII | CTCAG | 5 cut(s) | 528, 701, 2557, 2743, 3164 |
| BseNI | ACTGG | 8 cut(s) | 364, 839, 1192, 1221, 1717, 2388, 2604, 3309 |
| BseRI | GAGGAG | 6 cut(s) | 179, 227, 230, 282, 3065, 3660 |
| BseSI | GKGCMC | 1 cut(s) | 756 |
| BseX3I | CGGCCG | 1 cut(s) | 132 |
| BseXI | GCAGC | 6 cut(s) | 580, 1031, 1248, 2360, 3390, 3515 |
| BseYI | CCCAGC | 1 cut(s) | 2029 |
| Bsh1236I | CGCG | 4 cut(s) | 65, 1416, 2370, 2514 |
| Bsh1285I | CGRYCG | 2 cut(s) | 135, 3458 |
| BshNI | GGYRCC | 3 cut(s) | 618, 2602, 3460 |
| BshTI | ACCGGT | 1 cut(s) | 3457 |
| BsiEI | CGRYCG | 2 cut(s) | 135, 3458 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2079 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3602 |
| BsiSI | CCGG | 4 cut(s) | 131, 1661, 2894, 3458 |
| BslFI | GGGAC | 1 cut(s) | 3501 |
| BsmAI | GTCTC | 7 cut(s) | 858, 1703, 2374, 2997, 3022, 3138, 3367 |
| BsmFI | GGGAC | 1 cut(s) | 3501 |
| BsmI | GAATGC | 1 cut(s) | 1357 |
| Bso31I | GGTCTC | 1 cut(s) | 2997 |
| BsoBI | CYCGRG | 1 cut(s) | 3602 |
| Bsp119I | TTCGAA | 2 cut(s) | 473, 3339 |
| Bsp1286I | GDGCHC | 3 cut(s) | 756, 1853, 2079 |
| Bsp13I | TCCGGA | 1 cut(s) | 2893 |
| Bsp1407I | TGTACA | 4 cut(s) | 369, 859, 2234, 3325 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2543 |
| BspCNI | CTCAG | 5 cut(s) | 527, 702, 2556, 2742, 3163 |
| BspEI | TCCGGA | 1 cut(s) | 2893 |
| BspFNI | CGCG | 4 cut(s) | 65, 1416, 2370, 2514 |
| BspHI | TCATGA | 1 cut(s) | 3109 |
| BspMI | ACCTGC | 1 cut(s) | 178 |
| BspPI | GGATC | 6 cut(s) | 236, 538, 1646, 1659, 2173, 2275 |
| BspQI | GCTCTTC | 2 cut(s) | 93, 411 |
| BspT104I | TTCGAA | 2 cut(s) | 473, 3339 |
| BspT107I | GGYRCC | 3 cut(s) | 618, 2602, 3460 |
| BspTI | CTTAAG | 1 cut(s) | 2315 |
| BspTNI | GGTCTC | 1 cut(s) | 2997 |
| BsrBI | CCGCTC | 1 cut(s) | 2542 |
| BsrDI | GCAATG | 2 cut(s) | 1596, 3700 |
| BsrFI | RCCGGY | 2 cut(s) | 130, 3457 |
| BsrGI | TGTACA | 4 cut(s) | 369, 859, 2234, 3325 |
| BsrI | ACTGG | 8 cut(s) | 364, 839, 1192, 1221, 1717, 2388, 2604, 3309 |
| BssAI | RCCGGY | 2 cut(s) | 130, 3457 |
| BssECI | CCNNGG | 4 cut(s) | 152, 210, 1308, 2421 |
| BssNI | GRCGYC | 2 cut(s) | 2603, 3498 |
| BssSI | CACGAG | 2 cut(s) | 92, 855 |
| BssT1I | CCWWGG | 2 cut(s) | 1308, 2421 |
| Bst2BI | CACGAG | 2 cut(s) | 92, 855 |
| Bst2UI | CCWGG | 7 cut(s) | 154, 194, 1124, 1887, 2022, 3008, 3507 |
| Bst4CI | ACNGT | 8 cut(s) | 618, 1559, 1968, 2093, 2744, 3033, 3243, 3380 |
| BstACI | GRCGYC | 2 cut(s) | 2603, 3498 |
| BstAFI | CTTAAG | 1 cut(s) | 2315 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 178, 1735 |
| BstAUI | TGTACA | 4 cut(s) | 369, 859, 2234, 3325 |
| BstBI | TTCGAA | 2 cut(s) | 473, 3339 |
| BstC8I | GCNNGC | 5 cut(s) | 132, 1641, 1789, 1793, 2672 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2885 |
| BstF5I | GGATG | 9 cut(s) | 509, 535, 607, 721, 1825, 2045, 2418, 2522, 3490 |
| BstFNI | CGCG | 4 cut(s) | 65, 1416, 2370, 2514 |
| BstH2I | RGCGCY | 1 cut(s) | 2606 |
| BstHHI | GCGC | 2 cut(s) | 2289, 2605 |
| BstMAI | GTCTC | 7 cut(s) | 858, 1703, 2374, 2997, 3022, 3138, 3367 |
| BstMCI | CGRYCG | 2 cut(s) | 135, 3458 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 41, 127, 148, 178, 1735, 1797, 2083, 2831 |
| BstNI | CCWGG | 7 cut(s) | 154, 194, 1124, 1887, 2022, 3008, 3507 |
| BstNSI | RCATGY | 3 cut(s) | 1605, 1670, 3326 |
| BstSCI | CCNGG | 8 cut(s) | 152, 192, 1122, 1659, 1885, 2020, 3006, 3505 |
| BstSFI | CTRYAG | 1 cut(s) | 3640 |
| BstSLI | GKGCMC | 1 cut(s) | 756 |
| BstUI | CGCG | 4 cut(s) | 65, 1416, 2370, 2514 |
| BstV1I | GCAGC | 6 cut(s) | 580, 1031, 1248, 2360, 3390, 3515 |
| BstV2I | GAAGAC | 1 cut(s) | 2810 |
| BstX2I | RGATCY | 4 cut(s) | 543, 1074, 1651, 2178 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 160, 2264 |
| BstYI | RGATCY | 4 cut(s) | 543, 1074, 1651, 2178 |
| BstZI | CGGCCG | 1 cut(s) | 132 |
| Bsu36I | CCTNAGG | 1 cut(s) | 514 |
| BsuI | GTATCC | 2 cut(s) | 846, 1541 |
| BtsCI | GGATG | 9 cut(s) | 509, 535, 607, 721, 1825, 2045, 2418, 2522, 3490 |
| BtsI | GCAGTG | 1 cut(s) | 1423 |
| BtsIMutI | CAGTG | 5 cut(s) | 23, 357, 1423, 1564, 3385 |
| BveI | ACCTGC | 1 cut(s) | 178 |
| Cac8I | GCNNGC | 5 cut(s) | 132, 1641, 1789, 1793, 2672 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2690 |
| CciI | TCATGA | 1 cut(s) | 3109 |
| CfoI | GCGC | 2 cut(s) | 2289, 2605 |
| Cfr10I | RCCGGY | 2 cut(s) | 130, 3457 |
| Cfr13I | GGNCC | 8 cut(s) | 52, 128, 190, 582, 1540, 1693, 3515, 3656 |
| CseI | GACGC | 4 cut(s) | 1735, 2631, 2767, 3623 |
| CspAI | ACCGGT | 1 cut(s) | 3457 |
| DinI | GGCGCC | 1 cut(s) | 2604 |
| DraI | TTTAAA | 3 cut(s) | 1924, 2865, 3334 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3380 |
| EaeI | YGGCCR | 3 cut(s) | 96, 132, 361 |
| EagI | CGGCCG | 1 cut(s) | 132 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3380 |
| EciI | GGCGGA | 1 cut(s) | 965 |
| Ecl136II | GAGCTC | 1 cut(s) | 2077 |
| EclXI | CGGCCG | 1 cut(s) | 132 |
| Eco130I | CCWWGG | 2 cut(s) | 1308, 2421 |
| Eco147I | AGGCCT | 1 cut(s) | 1041 |
| Eco24I | GRGCYC | 2 cut(s) | 1853, 2079 |
| Eco31I | GGTCTC | 1 cut(s) | 2997 |
| Eco32I | GATATC | 1 cut(s) | 1517 |
| Eco47I | GGWCC | 4 cut(s) | 52, 190, 1540, 3515 |
| Eco52I | CGGCCG | 1 cut(s) | 132 |
| Eco53kI | GAGCTC | 1 cut(s) | 2077 |
| Eco57I | CTGAAG | 5 cut(s) | 47, 242, 1008, 2137, 2658 |
| Eco81I | CCTNAGG | 1 cut(s) | 514 |
| Eco88I | CYCGRG | 1 cut(s) | 3602 |
| EcoICRI | GAGCTC | 1 cut(s) | 2077 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2885 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1540, 1693, 3515 |
| EcoRI | GAATTC | 1 cut(s) | 3161 |
| EcoRII | CCWGG | 7 cut(s) | 152, 192, 1122, 1885, 2020, 3006, 3505 |
| EcoRV | GATATC | 1 cut(s) | 1517 |
| EcoT14I | CCWWGG | 2 cut(s) | 1308, 2421 |
| EcoT38I | GRGCYC | 2 cut(s) | 1853, 2079 |
| EgeI | GGCGCC | 1 cut(s) | 2604 |
| EheI | GGCGCC | 1 cut(s) | 2604 |
| ErhI | CCWWGG | 2 cut(s) | 1308, 2421 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 265, 297 |
| FaqI | GGGAC | 1 cut(s) | 3501 |
| FauI | CCCGC | 2 cut(s) | 2782, 2830 |
| FbaI | TGATCA | 2 cut(s) | 2692, 2764 |
| FblI | GTMKAC | 2 cut(s) | 198, 3454 |
| FokI | GGATG | 9 cut(s) | 496, 542, 614, 728, 1832, 2032, 2425, 2529, 3477 |
| FriOI | GRGCYC | 2 cut(s) | 1853, 2079 |
| FseI | GGCCGGCC | 1 cut(s) | 134 |
| FspBI | CTAG | 7 cut(s) | 575, 647, 1043, 1646, 3197, 3362, 3542 |
| GlaI | GCGC | 2 cut(s) | 2288, 2604 |
| GsaI | CCCAGC | 1 cut(s) | 2033 |
| GsuI | CTGGAG | 5 cut(s) | 1230, 1760, 1995, 2405, 3046 |
| HaeII | RGCGCY | 1 cut(s) | 2606 |
| HapII | CCGG | 4 cut(s) | 131, 1661, 2894, 3458 |
| HgaI | GACGC | 4 cut(s) | 1735, 2631, 2767, 3623 |
| HhaI | GCGC | 2 cut(s) | 2289, 2605 |
| Hin1I | GRCGYC | 2 cut(s) | 2603, 3498 |
| Hin6I | GCGC | 2 cut(s) | 2287, 2603 |
| HinP1I | GCGC | 2 cut(s) | 2287, 2603 |
| HincII | GTYRAC | 3 cut(s) | 199, 1291, 3455 |
| HindII | GTYRAC | 3 cut(s) | 199, 1291, 3455 |
| HindIII | AAGCTT | 1 cut(s) | 2149 |
| HpaI | GTTAAC | 1 cut(s) | 1291 |
| HpaII | CCGG | 4 cut(s) | 131, 1661, 2894, 3458 |
| HphI | GGTGA | 8 cut(s) | 199, 350, 650, 700, 1138, 1274, 1767, 2938 |
| Hpy166II | GTNNAC | 8 cut(s) | 199, 372, 738, 860, 1291, 1457, 3177, 3455 |
| Hpy8I | GTNNAC | 8 cut(s) | 199, 372, 738, 860, 1291, 1457, 3177, 3455 |
| Hpy99I | CGWCG | 5 cut(s) | 203, 752, 1830, 3356, 3456 |
| HpyCH4III | ACNGT | 8 cut(s) | 618, 1559, 1968, 2093, 2744, 3033, 3243, 3380 |
| HpyCH4IV | ACGT | 5 cut(s) | 811, 1860, 2563, 2980, 3498 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 41, 127, 148, 178, 1735, 1797, 2083, 2831 |
| HpySE526I | ACGT | 5 cut(s) | 811, 1860, 2563, 2980, 3498 |
| Hsp92I | GRCGYC | 2 cut(s) | 2603, 3498 |
| HspAI | GCGC | 2 cut(s) | 2287, 2603 |
| KasI | GGCGCC | 1 cut(s) | 2602 |
| KflI | GGGWCCC | 1 cut(s) | 3515 |
| Kpn2I | TCCGGA | 1 cut(s) | 2893 |
| KroI | GCCGGC | 1 cut(s) | 130 |
| KroNI | GCCGGC | 1 cut(s) | 132 |
| Ksp22I | TGATCA | 2 cut(s) | 2692, 2764 |
| KspAI | GTTAAC | 1 cut(s) | 1291 |
| LguI | GCTCTTC | 2 cut(s) | 93, 411 |
| LmnI | GCTCC | 2 cut(s) | 156, 217 |
| Lsp1109I | GCAGC | 6 cut(s) | 580, 1031, 1248, 2360, 3390, 3515 |
| MaeI | CTAG | 7 cut(s) | 575, 647, 1043, 1646, 3197, 3362, 3542 |
| MaeII | ACGT | 5 cut(s) | 811, 1860, 2563, 2980, 3498 |
| MaeIII | GTNAC | 8 cut(s) | 1334, 1553, 1773, 2755, 3295, 3367, 3611, 3660 |
| MbiI | CCGCTC | 1 cut(s) | 2542 |
| MfeI | CAATTG | 3 cut(s) | 948, 1398, 2472 |
| MflI | RGATCY | 4 cut(s) | 543, 1074, 1651, 2178 |
| MhlI | GDGCHC | 3 cut(s) | 756, 1853, 2079 |
| MlsI | TGGCCA | 2 cut(s) | 98, 363 |
| MluI | ACGCGT | 1 cut(s) | 1414 |
| MluNI | TGGCCA | 2 cut(s) | 98, 363 |
| Mly113I | GGCGCC | 1 cut(s) | 2603 |
| MmeI | TCCRAC | 8 cut(s) | 771, 823, 868, 1176, 1697, 2073, 2245, 2670 |
| Mox20I | TGGCCA | 2 cut(s) | 98, 363 |
| MroI | TCCGGA | 1 cut(s) | 2893 |
| MroNI | GCCGGC | 1 cut(s) | 130 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1355, 1587, 3264 |
| MscI | TGGCCA | 2 cut(s) | 98, 363 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1488, 1818, 2459, 3108 |
| Msp20I | TGGCCA | 2 cut(s) | 98, 363 |
| MspA1I | CMGCKG | 2 cut(s) | 2825, 3210 |
| MspCI | CTTAAG | 1 cut(s) | 2315 |
| MspI | CCGG | 4 cut(s) | 131, 1661, 2894, 3458 |
| MspR9I | CCNGG | 8 cut(s) | 154, 194, 1124, 1661, 1887, 2022, 3008, 3507 |
| MunI | CAATTG | 3 cut(s) | 948, 1398, 2472 |
| Mva1269I | GAATGC | 1 cut(s) | 1357 |
| MvaI | CCWGG | 7 cut(s) | 154, 194, 1124, 1887, 2022, 3008, 3507 |
| MvnI | CGCG | 4 cut(s) | 65, 1416, 2370, 2514 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 41, 127, 148, 178, 1735, 1797, 2083, 2831 |
| NaeI | GCCGGC | 1 cut(s) | 132 |
| NarI | GGCGCC | 1 cut(s) | 2603 |
| NciI | CCSGG | 1 cut(s) | 1661 |
| NgoMIV | GCCGGC | 1 cut(s) | 130 |
| NmeAIII | GCCGAG | 1 cut(s) | 2272 |
| NmuCI | GTSAC | 5 cut(s) | 1773, 2755, 3367, 3611, 3660 |
| NspI | RCATGY | 3 cut(s) | 1605, 1670, 3326 |
| NspV | TTCGAA | 2 cut(s) | 473, 3339 |
| OliI | CACNNNNGTG | 1 cut(s) | 2459 |
| PagI | TCATGA | 1 cut(s) | 3109 |
| PceI | AGGCCT | 1 cut(s) | 1041 |
| PciSI | GCTCTTC | 2 cut(s) | 93, 411 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 207, 2101, 2298, 3621 |
| PctI | GAATGC | 1 cut(s) | 1357 |
| PdiI | GCCGGC | 1 cut(s) | 132 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1355, 1587, 3264 |
| PfeI | GAWTC | 8 cut(s) | 269, 393, 666, 1119, 2025, 2417, 2572, 2987 |
| PinAI | ACCGGT | 1 cut(s) | 3457 |
| PluTI | GGCGCC | 1 cut(s) | 2606 |
| PpuMI | RGGWCCY | 2 cut(s) | 1540, 3515 |
| PshBI | ATTAAT | 1 cut(s) | 2840 |
| PsiI | TTATAA | 1 cut(s) | 1952 |
| Psp124BI | GAGCTC | 1 cut(s) | 2079 |
| Psp5II | RGGWCCY | 2 cut(s) | 1540, 3515 |
| Psp6I | CCWGG | 7 cut(s) | 152, 192, 1122, 1885, 2020, 3006, 3505 |
| PspFI | CCCAGC | 1 cut(s) | 2029 |
| PspGI | CCWGG | 7 cut(s) | 152, 192, 1122, 1885, 2020, 3006, 3505 |
| PspPI | GGNCC | 8 cut(s) | 52, 128, 190, 582, 1540, 1693, 3515, 3656 |
| PspPPI | RGGWCCY | 2 cut(s) | 1540, 3515 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2690 |
| PsuI | RGATCY | 4 cut(s) | 543, 1074, 1651, 2178 |
| PvuII | CAGCTG | 1 cut(s) | 3210 |
| RigI | GGCCGGCC | 1 cut(s) | 134 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1488, 1818, 2459, 3108 |
| SacI | GAGCTC | 1 cut(s) | 2079 |
| SalI | GTCGAC | 2 cut(s) | 197, 3453 |
| SapI | GCTCTTC | 2 cut(s) | 93, 411 |
| Sau96I | GGNCC | 8 cut(s) | 52, 128, 190, 582, 1540, 1693, 3515, 3656 |
| ScaI | AGTACT | 4 cut(s) | 277, 1680, 3240, 3360 |
| ScrFI | CCNGG | 8 cut(s) | 154, 194, 1124, 1661, 1887, 2022, 3008, 3507 |
| SduI | GDGCHC | 3 cut(s) | 756, 1853, 2079 |
| SfcI | CTRYAG | 1 cut(s) | 3640 |
| SfoI | GGCGCC | 1 cut(s) | 2604 |
| SfuI | TTCGAA | 2 cut(s) | 473, 3339 |
| SinI | GGWCC | 4 cut(s) | 52, 190, 1540, 3515 |
| SmiI | ATTTAAAT | 1 cut(s) | 3334 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1488, 1818, 2459, 3108 |
| SmlI | CTYRAG | 7 cut(s) | 455, 872, 1906, 2120, 2273, 2315, 3668 |
| SmoI | CTYRAG | 7 cut(s) | 455, 872, 1906, 2120, 2273, 2315, 3668 |
| SpeI | ACTAGT | 2 cut(s) | 574, 3361 |
| SseBI | AGGCCT | 1 cut(s) | 1041 |
| SspDI | GGCGCC | 1 cut(s) | 2602 |
| SspMI | CTAG | 7 cut(s) | 575, 647, 1043, 1646, 3197, 3362, 3542 |
| SstI | GAGCTC | 1 cut(s) | 2079 |
| StuI | AGGCCT | 1 cut(s) | 1041 |
| StyD4I | CCNGG | 8 cut(s) | 152, 192, 1122, 1659, 1885, 2020, 3006, 3505 |
| StyI | CCWWGG | 2 cut(s) | 1308, 2421 |
| SwaI | ATTTAAAT | 1 cut(s) | 3334 |
| TaaI | ACNGT | 8 cut(s) | 618, 1559, 1968, 2093, 2744, 3033, 3243, 3380 |
| TaiI | ACGT | 5 cut(s) | 814, 1863, 2566, 2983, 3501 |
| TatI | WGTACW | 9 cut(s) | 275, 369, 859, 1678, 2234, 2505, 3238, 3325, 3358 |
| TauI | GCSGC | 4 cut(s) | 184, 187, 722, 2373 |
| TfiI | GAWTC | 8 cut(s) | 269, 393, 666, 1119, 2025, 2417, 2572, 2987 |
| TscAI | CASTG | 5 cut(s) | 30, 364, 1430, 1564, 3385 |
| TseFI | GTSAC | 5 cut(s) | 1773, 2755, 3367, 3611, 3660 |
| TseI | GCWGC | 6 cut(s) | 568, 1019, 1236, 2373, 3403, 3528 |
| Tsp45I | GTSAC | 5 cut(s) | 1773, 2755, 3367, 3611, 3660 |
| TspGWI | ACGGA | 2 cut(s) | 65, 3405 |
| TspRI | CASTG | 5 cut(s) | 30, 364, 1430, 1564, 3385 |
| Vha464I | CTTAAG | 1 cut(s) | 2315 |
| VpaK11BI | GGWCC | 4 cut(s) | 52, 190, 1540, 3515 |
| VspI | ATTAAT | 1 cut(s) | 2840 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2885 |
| XceI | RCATGY | 3 cut(s) | 1605, 1670, 3326 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 106 |
| XmiI | GTMKAC | 2 cut(s) | 198, 3454 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1355, 1587, 3264 |
| XspI | CTAG | 7 cut(s) | 575, 647, 1043, 1646, 3197, 3362, 3542 |
| ZraI | GACGTC | 1 cut(s) | 3499 |
| ZrmI | AGTACT | 4 cut(s) | 277, 1680, 3240, 3360 |