TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 24 - 184 | 3.3e-56 | TIR domain |
| TIR_2 | PF13676 | 26 - 121 | 5.5e-16 | TIR domain |
| NB-ARC | PF00931 | 212 - 375 | 2.1e-18 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 445 - 513 | 1.5e-19 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 694 - 785 | 2.8e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 703 - 902 | 3.6e-21 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1835 |
| AciI | CCGC | 1 cut(s) | 2502 |
| AclWI | GGATC | 7 cut(s) | 295, 907, 920, 2009, 2022, 2035, 3252 |
| AcoI | YGGCCR | 3 cut(s) | 338, 985, 1781 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 372, 794, 1427, 1737, 2024 |
| AflIII | ACRYGT | 1 cut(s) | 3098 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2727 |
| AjiI | CACGTC | 1 cut(s) | 3101 |
| AjnI | CCWGG | 2 cut(s) | 987, 1549 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2877, 2909 |
| Alw21I | GWGCWC | 2 cut(s) | 636, 3483 |
| Alw26I | GTCTC | 2 cut(s) | 615, 644 |
| Alw44I | GTGCAC | 1 cut(s) | 3479 |
| AlwI | GGATC | 7 cut(s) | 295, 907, 920, 2009, 2022, 2035, 3252 |
| AoxI | GGCC | 6 cut(s) | 338, 796, 985, 1452, 1781, 2248 |
| ApaLI | GTGCAC | 1 cut(s) | 3479 |
| ApeKI | GCWGC | 7 cut(s) | 476, 1247, 1857, 1923, 2301, 3416, 3628 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1112, 2409 |
| AspA2I | CCTAGG | 1 cut(s) | 2087 |
| AspLEI | GCGC | 4 cut(s) | 208, 903, 2422, 3265 |
| AspS9I | GGNCC | 3 cut(s) | 495, 1453, 3343 |
| AsuHPI | GGTGA | 7 cut(s) | 107, 407, 868, 1108, 1342, 1530, 1565 |
| AvaII | GGWCC | 2 cut(s) | 495, 3343 |
| AvrII | CCTAGG | 1 cut(s) | 2087 |
| BaeGI | GKGCMC | 2 cut(s) | 3235, 3483 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3537, 3570 |
| BalI | TGGCCA | 3 cut(s) | 340, 987, 1783 |
| BamHI | GGATCC | 2 cut(s) | 912, 2027 |
| BanII | GRGCYC | 1 cut(s) | 636 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1569, 1601 |
| BauI | CACGAG | 1 cut(s) | 2775 |
| BbsI | GAAGAC | 6 cut(s) | 70, 812, 1175, 2537, 3471, 3551 |
| Bbv12I | GWGCWC | 2 cut(s) | 636, 3483 |
| BbvI | GCAGC | 7 cut(s) | 488, 1259, 1844, 1910, 2313, 3428, 3640 |
| BccI | CCATC | 6 cut(s) | 65, 447, 1816, 2167, 2233, 3026 |
| BceAI | ACGGC | 1 cut(s) | 346 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 3242, 3276, 3506, 3540 |
| BciT130I | CCWGG | 2 cut(s) | 989, 1551 |
| BciVI | GTATCC | 1 cut(s) | 3133 |
| BclI | TGATCA | 1 cut(s) | 12 |
| BcoDI | GTCTC | 2 cut(s) | 615, 644 |
| BfaI | CTAG | 8 cut(s) | 800, 1151, 1346, 2088, 2655, 2672, 2856, 3350 |
| BfmI | CTRYAG | 5 cut(s) | 1161, 1852, 2911, 3304, 3414 |
| BfoI | RGCGCY | 2 cut(s) | 209, 2423 |
| BfuI | GTATCC | 1 cut(s) | 3133 |
| BglII | AGATCT | 1 cut(s) | 2257 |
| BisI | GCNGC | 7 cut(s) | 477, 1248, 1858, 1924, 2302, 3417, 3629 |
| BlnI | CCTAGG | 1 cut(s) | 2087 |
| BlsI | GCNGC | 7 cut(s) | 478, 1249, 1859, 1925, 2303, 3418, 3630 |
| BmcAI | AGTACT | 3 cut(s) | 1159, 1440, 1991 |
| Bme1390I | CCNGG | 2 cut(s) | 989, 1551 |
| Bme18I | GGWCC | 2 cut(s) | 495, 3343 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2727 |
| BmgBI | CACGTC | 1 cut(s) | 3101 |
| BmgT120I | GGNCC | 3 cut(s) | 495, 1453, 3343 |
| BmiI | GGNNCC | 7 cut(s) | 28, 360, 377, 914, 1772, 2029, 3344 |
| BmrFI | CCNGG | 2 cut(s) | 989, 1551 |
| BmrI | ACTGGG | 2 cut(s) | 590, 1746 |
| BmsI | GCATC | 5 cut(s) | 275, 1479, 1736, 2054, 2988 |
| BmuI | ACTGGG | 2 cut(s) | 590, 1746 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2052 |
| BpiI | GAAGAC | 6 cut(s) | 70, 812, 1175, 2537, 3471, 3551 |
| BpmI | CTGGAG | 2 cut(s) | 987, 2367 |
| Bpu10I | CCTNAGC | 1 cut(s) | 499 |
| BpuEI | CTTGAG | 4 cut(s) | 6, 2071, 2345, 2611 |
| Bsa29I | ATCGAT | 1 cut(s) | 3220 |
| BsaBI | GATNNNNATC | 2 cut(s) | 936, 1587 |
| BsaJI | CCNNGG | 3 cut(s) | 988, 1823, 2087 |
| BsaWI | WCCGGW | 1 cut(s) | 2812 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 431, 461, 786, 816 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 372, 794, 1427, 1737, 2024 |
| Bse118I | RCCGGY | 1 cut(s) | 1129 |
| Bse1I | ACTGG | 9 cut(s) | 297, 388, 596, 688, 949, 1404, 1741, 2484, 3041 |
| Bse3DI | GCAATG | 4 cut(s) | 1350, 1729, 2085, 2985 |
| Bse8I | GATNNNNATC | 2 cut(s) | 936, 1587 |
| BseBI | CCWGG | 2 cut(s) | 989, 1551 |
| BseCI | ATCGAT | 1 cut(s) | 3220 |
| BseDI | CCNNGG | 3 cut(s) | 988, 1823, 2087 |
| BseGI | GGATG | 9 cut(s) | 1494, 1588, 1727, 2069, 2279, 2459, 3003, 3195, 3647 |
| BseJI | GATNNNNATC | 2 cut(s) | 936, 1587 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 372, 794, 1427, 1737, 2024 |
| BseMI | GCAATG | 4 cut(s) | 1350, 1729, 2085, 2985 |
| BseMII | CTCAG | 3 cut(s) | 74, 481, 3060 |
| BseNI | ACTGG | 9 cut(s) | 297, 388, 596, 688, 949, 1404, 1741, 2484, 3041 |
| BseRI | GAGGAG | 2 cut(s) | 201, 247 |
| BseSI | GKGCMC | 2 cut(s) | 3235, 3483 |
| BseXI | GCAGC | 7 cut(s) | 488, 1259, 1844, 1910, 2313, 3428, 3640 |
| BsgI | GTGCAG | 1 cut(s) | 2421 |
| BshFI | GGCC | 6 cut(s) | 340, 798, 987, 1454, 1783, 2250 |
| BshVI | ATCGAT | 1 cut(s) | 3220 |
| BsiHKAI | GWGCWC | 2 cut(s) | 636, 3483 |
| BsiSI | CCGG | 4 cut(s) | 1130, 2202, 2417, 2813 |
| BslFI | GGGAC | 1 cut(s) | 1971 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 372, 794, 1427, 1737, 2024 |
| BsmAI | GTCTC | 2 cut(s) | 615, 644 |
| BsmFI | GGGAC | 1 cut(s) | 1971 |
| BsmI | GAATGC | 4 cut(s) | 422, 1114, 1678, 2351 |
| BsnI | GGCC | 6 cut(s) | 340, 798, 987, 1454, 1783, 2250 |
| Bsp1286I | GDGCHC | 3 cut(s) | 636, 3235, 3483 |
| Bsp1407I | TGTACA | 6 cut(s) | 129, 569, 720, 1585, 1994, 3382 |
| BspACI | CCGC | 1 cut(s) | 2502 |
| BspANI | GGCC | 6 cut(s) | 340, 798, 987, 1454, 1783, 2250 |
| BspCNI | CTCAG | 3 cut(s) | 75, 480, 3059 |
| BspDI | ATCGAT | 1 cut(s) | 3220 |
| BspHI | TCATGA | 4 cut(s) | 529, 1081, 2190, 3364 |
| BspLI | GGNNCC | 7 cut(s) | 28, 360, 377, 914, 1772, 2029, 3344 |
| BspMAI | CTGCAG | 1 cut(s) | 3418 |
| BspPI | GGATC | 7 cut(s) | 295, 907, 920, 2009, 2022, 2035, 3252 |
| BsrDI | GCAATG | 4 cut(s) | 1350, 1729, 2085, 2985 |
| BsrFI | RCCGGY | 1 cut(s) | 1129 |
| BsrGI | TGTACA | 6 cut(s) | 129, 569, 720, 1585, 1994, 3382 |
| BsrI | ACTGG | 9 cut(s) | 297, 388, 596, 688, 949, 1404, 1741, 2484, 3041 |
| BssAI | RCCGGY | 1 cut(s) | 1129 |
| BssECI | CCNNGG | 3 cut(s) | 988, 1823, 2087 |
| BssSI | CACGAG | 1 cut(s) | 2775 |
| BssT1I | CCWWGG | 2 cut(s) | 1823, 2087 |
| Bst2BI | CACGAG | 1 cut(s) | 2775 |
| Bst2UI | CCWGG | 2 cut(s) | 989, 1551 |
| Bst6I | CTCTTC | 4 cut(s) | 37, 43, 178, 1572 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 898, 1498, 3625 |
| BstAUI | TGTACA | 6 cut(s) | 129, 569, 720, 1585, 1994, 3382 |
| BstC8I | GCNNGC | 4 cut(s) | 1131, 1245, 2098, 3267 |
| BstDEI | CTNAG | 7 cut(s) | 83, 179, 467, 499, 1969, 2861, 3046 |
| BstEII | GGTNACC | 1 cut(s) | 856 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 792 |
| BstF5I | GGATG | 9 cut(s) | 1494, 1588, 1727, 2069, 2279, 2459, 3003, 3195, 3647 |
| BstH2I | RGCGCY | 2 cut(s) | 209, 2423 |
| BstHHI | GCGC | 4 cut(s) | 208, 903, 2422, 3265 |
| BstMAI | GTCTC | 2 cut(s) | 615, 644 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 898, 1451, 1498, 1555, 2428, 3625 |
| BstNI | CCWGG | 2 cut(s) | 989, 1551 |
| BstNSI | RCATGY | 5 cut(s) | 1359, 1849, 1864, 2556, 3623 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2052 |
| BstPI | GGTNACC | 1 cut(s) | 856 |
| BstSCI | CCNGG | 2 cut(s) | 987, 1549 |
| BstSFI | CTRYAG | 5 cut(s) | 1161, 1852, 2911, 3304, 3414 |
| BstSLI | GKGCMC | 2 cut(s) | 3235, 3483 |
| BstV1I | GCAGC | 7 cut(s) | 488, 1259, 1844, 1910, 2313, 3428, 3640 |
| BstV2I | GAAGAC | 6 cut(s) | 70, 812, 1175, 2537, 3471, 3551 |
| BstX2I | RGATCY | 4 cut(s) | 300, 912, 2027, 2257 |
| BstYI | RGATCY | 4 cut(s) | 300, 912, 2027, 2257 |
| Bsu15I | ATCGAT | 1 cut(s) | 3220 |
| BsuI | GTATCC | 1 cut(s) | 3133 |
| BsuRI | GGCC | 6 cut(s) | 340, 798, 987, 1454, 1783, 2250 |
| BsuTUI | ATCGAT | 1 cut(s) | 3220 |
| BtrI | CACGTC | 1 cut(s) | 3101 |
| BtsCI | GGATG | 9 cut(s) | 1494, 1588, 1727, 2069, 2279, 2459, 3003, 3195, 3647 |
| Cac8I | GCNNGC | 4 cut(s) | 1131, 1245, 2098, 3267 |
| CciI | TCATGA | 4 cut(s) | 529, 1081, 2190, 3364 |
| CfoI | GCGC | 4 cut(s) | 208, 903, 2422, 3265 |
| Cfr10I | RCCGGY | 1 cut(s) | 1129 |
| Cfr13I | GGNCC | 3 cut(s) | 495, 1453, 3343 |
| ClaI | ATCGAT | 1 cut(s) | 3220 |
| DdeI | CTNAG | 7 cut(s) | 83, 179, 467, 499, 1969, 2861, 3046 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2727 |
| EaeI | YGGCCR | 3 cut(s) | 338, 985, 1781 |
| Eam1104I | CTCTTC | 4 cut(s) | 37, 43, 178, 1572 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2727 |
| EarI | CTCTTC | 4 cut(s) | 37, 43, 178, 1572 |
| Ecl136II | GAGCTC | 1 cut(s) | 634 |
| Eco130I | CCWWGG | 2 cut(s) | 1823, 2087 |
| Eco147I | AGGCCT | 1 cut(s) | 798 |
| Eco24I | GRGCYC | 1 cut(s) | 636 |
| Eco32I | GATATC | 2 cut(s) | 535, 2932 |
| Eco47I | GGWCC | 2 cut(s) | 495, 3343 |
| Eco53kI | GAGCTC | 1 cut(s) | 634 |
| Eco91I | GGTNACC | 1 cut(s) | 856 |
| EcoICRI | GAGCTC | 1 cut(s) | 634 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 792 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1453 |
| EcoO65I | GGTNACC | 1 cut(s) | 856 |
| EcoRI | GAATTC | 2 cut(s) | 2177, 2474 |
| EcoRII | CCWGG | 2 cut(s) | 987, 1549 |
| EcoRV | GATATC | 2 cut(s) | 535, 2932 |
| EcoT14I | CCWWGG | 2 cut(s) | 1823, 2087 |
| EcoT22I | ATGCAT | 4 cut(s) | 268, 1494, 1729, 3003 |
| EcoT38I | GRGCYC | 1 cut(s) | 636 |
| ErhI | CCWWGG | 2 cut(s) | 1823, 2087 |
| FaqI | GGGAC | 1 cut(s) | 1971 |
| FauNDI | CATATG | 3 cut(s) | 1135, 1657, 3594 |
| FbaI | TGATCA | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 7 cut(s) | 477, 1248, 1858, 1924, 2302, 3417, 3629 |
| FokI | GGATG | 8 cut(s) | 1501, 1595, 1714, 2076, 2286, 2466, 3010, 3182 |
| FriOI | GRGCYC | 1 cut(s) | 636 |
| Fsp4HI | GCNGC | 7 cut(s) | 477, 1248, 1858, 1924, 2302, 3417, 3629 |
| FspBI | CTAG | 8 cut(s) | 800, 1151, 1346, 2088, 2655, 2672, 2856, 3350 |
| GlaI | GCGC | 4 cut(s) | 207, 902, 2421, 3264 |
| GluI | GCNGC | 7 cut(s) | 477, 1248, 1858, 1924, 2302, 3417, 3629 |
| GsuI | CTGGAG | 2 cut(s) | 987, 2367 |
| HaeII | RGCGCY | 2 cut(s) | 209, 2423 |
| HaeIII | GGCC | 6 cut(s) | 340, 798, 987, 1454, 1783, 2250 |
| HapII | CCGG | 4 cut(s) | 1130, 2202, 2417, 2813 |
| HhaI | GCGC | 4 cut(s) | 208, 903, 2422, 3265 |
| Hin6I | GCGC | 4 cut(s) | 206, 901, 2420, 3263 |
| HinP1I | GCGC | 4 cut(s) | 206, 901, 2420, 3263 |
| HincII | GTYRAC | 4 cut(s) | 1948, 2047, 2362, 2572 |
| HindII | GTYRAC | 4 cut(s) | 1948, 2047, 2362, 2572 |
| HindIII | AAGCTT | 5 cut(s) | 1086, 1681, 2039, 2140, 3334 |
| HpaII | CCGG | 4 cut(s) | 1130, 2202, 2417, 2813 |
| HphI | GGTGA | 7 cut(s) | 107, 407, 868, 1108, 1342, 1530, 1565 |
| Hpy188I | TCNGA | 9 cut(s) | 67, 147, 367, 1874, 2216, 2344, 2870, 3175, 3517 |
| HpyCH4IV | ACGT | 1 cut(s) | 3100 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 898, 1451, 1498, 1555, 2428, 3625 |
| HpyF3I | CTNAG | 7 cut(s) | 83, 179, 467, 499, 1969, 2861, 3046 |
| HpySE526I | ACGT | 1 cut(s) | 3100 |
| HspAI | GCGC | 4 cut(s) | 206, 901, 2420, 3263 |
| KroI | GCCGGC | 1 cut(s) | 1129 |
| KroNI | GCCGGC | 1 cut(s) | 1131 |
| Ksp22I | TGATCA | 1 cut(s) | 12 |
| LmnI | GCTCC | 2 cut(s) | 26, 358 |
| Lsp1109I | GCAGC | 7 cut(s) | 488, 1259, 1844, 1910, 2313, 3428, 3640 |
| LweI | GCATC | 5 cut(s) | 275, 1479, 1736, 2054, 2988 |
| MaeI | CTAG | 8 cut(s) | 800, 1151, 1346, 2088, 2655, 2672, 2856, 3350 |
| MaeII | ACGT | 1 cut(s) | 3100 |
| MaeIII | GTNAC | 7 cut(s) | 856, 1259, 1409, 1863, 2377, 2715, 3352 |
| MfeI | CAATTG | 1 cut(s) | 2232 |
| MflI | RGATCY | 4 cut(s) | 300, 912, 2027, 2257 |
| MhlI | GDGCHC | 3 cut(s) | 636, 3235, 3483 |
| MlsI | TGGCCA | 3 cut(s) | 340, 987, 1783 |
| MluNI | TGGCCA | 3 cut(s) | 340, 987, 1783 |
| MlyI | GAGTC | 4 cut(s) | 2062, 2374, 2828, 3179 |
| MmeI | TCCRAC | 5 cut(s) | 580, 1085, 2005, 2769, 3002 |
| Mox20I | TGGCCA | 3 cut(s) | 340, 987, 1783 |
| Mph1103I | ATGCAT | 4 cut(s) | 268, 1494, 1729, 3003 |
| MroNI | GCCGGC | 1 cut(s) | 1129 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1112, 2409 |
| MscI | TGGCCA | 3 cut(s) | 340, 987, 1783 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1216, 1218, 1671, 3238, 3640 |
| Msp20I | TGGCCA | 3 cut(s) | 340, 987, 1783 |
| MspA1I | CMGCKG | 2 cut(s) | 1857, 2100 |
| MspI | CCGG | 4 cut(s) | 1130, 2202, 2417, 2813 |
| MspR9I | CCNGG | 2 cut(s) | 989, 1551 |
| MunI | CAATTG | 1 cut(s) | 2232 |
| Mva1269I | GAATGC | 4 cut(s) | 422, 1114, 1678, 2351 |
| MvaI | CCWGG | 2 cut(s) | 989, 1551 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 898, 1451, 1498, 1555, 2428, 3625 |
| NaeI | GCCGGC | 1 cut(s) | 1131 |
| NdeI | CATATG | 3 cut(s) | 1135, 1657, 3594 |
| NgoMIV | GCCGGC | 1 cut(s) | 1129 |
| NlaIV | GGNNCC | 7 cut(s) | 28, 360, 377, 914, 1772, 2029, 3344 |
| NmuCI | GTSAC | 4 cut(s) | 856, 1409, 1863, 2377 |
| NsiI | ATGCAT | 4 cut(s) | 268, 1494, 1729, 3003 |
| NspI | RCATGY | 5 cut(s) | 1359, 1849, 1864, 2556, 3623 |
| PagI | TCATGA | 4 cut(s) | 529, 1081, 2190, 3364 |
| PceI | AGGCCT | 1 cut(s) | 798 |
| PctI | GAATGC | 4 cut(s) | 422, 1114, 1678, 2351 |
| PdiI | GCCGGC | 1 cut(s) | 1131 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1112, 2409 |
| PkrI | GCNGC | 7 cut(s) | 478, 1249, 1859, 1925, 2303, 3418, 3630 |
| PleI | GAGTC | 4 cut(s) | 2061, 2374, 2827, 3178 |
| PpsI | GAGTC | 4 cut(s) | 2061, 2374, 2827, 3178 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2052 |
| PsiI | TTATAA | 1 cut(s) | 1835 |
| Psp124BI | GAGCTC | 1 cut(s) | 636 |
| Psp6I | CCWGG | 2 cut(s) | 987, 1549 |
| PspEI | GGTNACC | 1 cut(s) | 856 |
| PspGI | CCWGG | 2 cut(s) | 987, 1549 |
| PspN4I | GGNNCC | 7 cut(s) | 28, 360, 377, 914, 1772, 2029, 3344 |
| PspPI | GGNCC | 3 cut(s) | 495, 1453, 3343 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1578, 1610, 3301, 3333 |
| PstI | CTGCAG | 1 cut(s) | 3418 |
| PsuI | RGATCY | 4 cut(s) | 300, 912, 2027, 2257 |
| PvuII | CAGCTG | 2 cut(s) | 1857, 2100 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1216, 1218, 1671, 3238, 3640 |
| SacI | GAGCTC | 1 cut(s) | 636 |
| SatI | GCNGC | 7 cut(s) | 477, 1248, 1858, 1924, 2302, 3417, 3629 |
| Sau96I | GGNCC | 3 cut(s) | 495, 1453, 3343 |
| ScaI | AGTACT | 3 cut(s) | 1159, 1440, 1991 |
| SchI | GAGTC | 4 cut(s) | 2062, 2374, 2828, 3179 |
| ScrFI | CCNGG | 2 cut(s) | 989, 1551 |
| SduI | GDGCHC | 3 cut(s) | 636, 3235, 3483 |
| SfaNI | GCATC | 5 cut(s) | 275, 1479, 1736, 2054, 2988 |
| SfcI | CTRYAG | 5 cut(s) | 1161, 1852, 2911, 3304, 3414 |
| SinI | GGWCC | 2 cut(s) | 495, 3343 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1216, 1218, 1671, 3238, 3640 |
| SmlI | CTYRAG | 4 cut(s) | 21, 2050, 2324, 2590 |
| SmoI | CTYRAG | 4 cut(s) | 21, 2050, 2324, 2590 |
| SseBI | AGGCCT | 1 cut(s) | 798 |
| SsiI | CCGC | 1 cut(s) | 2502 |
| SspI | AATATT | 3 cut(s) | 1465, 2951, 3460 |
| SspMI | CTAG | 8 cut(s) | 800, 1151, 1346, 2088, 2655, 2672, 2856, 3350 |
| SstI | GAGCTC | 1 cut(s) | 636 |
| StuI | AGGCCT | 1 cut(s) | 798 |
| StyD4I | CCNGG | 2 cut(s) | 987, 1549 |
| StyI | CCWWGG | 2 cut(s) | 1823, 2087 |
| TaiI | ACGT | 1 cut(s) | 3103 |
| TaqII | GACCGA | 1 cut(s) | 2841 |
| TseFI | GTSAC | 4 cut(s) | 856, 1409, 1863, 2377 |
| TseI | GCWGC | 7 cut(s) | 476, 1247, 1857, 1923, 2301, 3416, 3628 |
| Tsp45I | GTSAC | 4 cut(s) | 856, 1409, 1863, 2377 |
| TspGWI | ACGGA | 1 cut(s) | 388 |
| VneI | GTGCAC | 1 cut(s) | 3479 |
| VpaK11BI | GGWCC | 2 cut(s) | 495, 3343 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 792 |
| XbaI | TCTAGA | 1 cut(s) | 2855 |
| XceI | RCATGY | 5 cut(s) | 1359, 1849, 1864, 2556, 3623 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2391 |
| XmaJI | CCTAGG | 1 cut(s) | 2087 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1112, 2409 |
| XspI | CTAG | 8 cut(s) | 800, 1151, 1346, 2088, 2655, 2672, 2856, 3350 |
| ZrmI | AGTACT | 3 cut(s) | 1159, 1440, 1991 |
| Zsp2I | ATGCAT | 4 cut(s) | 268, 1494, 1729, 3003 |