TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 19 - 183 | 1.5e-55 | TIR domain |
| TIR_2 | PF13676 | 22 - 117 | 1.4e-15 | TIR domain |
| ATPase_2 | PF01637 | 208 - 316 | 1.6e-06 | ATPase domain predominantly from Archaea |
| NB-ARC | PF00931 | 213 - 371 | 3.4e-19 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 428 - 502 | 8.7e-18 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 672 - 775 | 4.4e-11 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 690 - 778 | 2.9e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 711, 1682, 2468 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 523 |
| AccI | GTMKAC | 2 cut(s) | 1554, 1963 |
| AccII | CGCG | 1 cut(s) | 94 |
| AciI | CCGC | 4 cut(s) | 361, 556, 722, 2959 |
| AclWI | GGATC | 7 cut(s) | 283, 341, 354, 872, 2686, 2785, 2985 |
| AcoI | YGGCCR | 1 cut(s) | 326 |
| AcsI | RAATTY | 7 cut(s) | 509, 1673, 2330, 2347, 2556, 2597, 2850 |
| AcuI | CTGAAG | 4 cut(s) | 39, 1072, 1889, 2841 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 523, 1177, 1382, 1624, 1991 |
| AjnI | CCWGG | 3 cut(s) | 1516, 1750, 2868 |
| Alw21I | GWGCWC | 4 cut(s) | 624, 1086, 2036, 2318 |
| Alw26I | GTCTC | 2 cut(s) | 1829, 2309 |
| AlwI | GGATC | 7 cut(s) | 283, 341, 354, 872, 2686, 2785, 2985 |
| Ama87I | CYCGRG | 1 cut(s) | 1079 |
| AoxI | GGCC | 4 cut(s) | 326, 784, 1407, 1748 |
| ApeKI | GCWGC | 7 cut(s) | 130, 397, 464, 480, 1235, 2268, 2284 |
| ApoI | RAATTY | 7 cut(s) | 509, 1673, 2330, 2347, 2556, 2597, 2850 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2525, 2557 |
| AseI | ATTAAT | 1 cut(s) | 2228 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1100, 1296, 1847, 2347 |
| AspLEI | GCGC | 3 cut(s) | 96, 2655, 2754 |
| AspS9I | GGNCC | 5 cut(s) | 934, 1408, 2372, 2546, 2826 |
| AsuC2I | CCSGG | 1 cut(s) | 2550 |
| AsuHPI | GGTGA | 4 cut(s) | 95, 395, 1497, 1639 |
| AsuII | TTCGAA | 1 cut(s) | 649 |
| AsuNHI | GCTAGC | 2 cut(s) | 737, 838 |
| AvaI | CYCGRG | 1 cut(s) | 1079 |
| AvaII | GGWCC | 4 cut(s) | 934, 2372, 2546, 2826 |
| BalI | TGGCCA | 1 cut(s) | 328 |
| BamHI | GGATCC | 1 cut(s) | 346 |
| BanII | GRGCYC | 2 cut(s) | 624, 1086 |
| BbsI | GAAGAC | 2 cut(s) | 186, 2065 |
| Bbv12I | GWGCWC | 4 cut(s) | 624, 1086, 2036, 2318 |
| BbvI | GCAGC | 7 cut(s) | 117, 409, 476, 492, 1222, 2280, 2296 |
| BccI | CCATC | 5 cut(s) | 358, 435, 769, 1262, 2134 |
| BciT130I | CCWGG | 3 cut(s) | 1518, 1752, 2870 |
| BciVI | GTATCC | 1 cut(s) | 585 |
| BclI | TGATCA | 3 cut(s) | 1714, 2638, 2737 |
| BcnI | CCSGG | 1 cut(s) | 2550 |
| BcoDI | GTCTC | 2 cut(s) | 1829, 2309 |
| BfmI | CTRYAG | 3 cut(s) | 131, 797, 2165 |
| BfuI | GTATCC | 1 cut(s) | 585 |
| BglII | AGATCT | 1 cut(s) | 2072 |
| BisI | GCNGC | 8 cut(s) | 131, 398, 465, 481, 556, 1236, 2269, 2285 |
| BlpI | GCTNAGC | 2 cut(s) | 576, 2004 |
| BlsI | GCNGC | 8 cut(s) | 132, 399, 466, 482, 557, 1237, 2270, 2286 |
| BmcAI | AGTACT | 5 cut(s) | 1395, 2635, 2734, 2923, 3007 |
| Bme1390I | CCNGG | 4 cut(s) | 1518, 1752, 2550, 2870 |
| Bme18I | GGWCC | 4 cut(s) | 934, 2372, 2546, 2826 |
| BmeT110I | CYCGRG | 1 cut(s) | 1079 |
| BmgT120I | GGNCC | 5 cut(s) | 934, 1408, 2372, 2546, 2826 |
| BmiI | GGNNCC | 7 cut(s) | 348, 365, 1433, 1739, 2548, 2827, 2940 |
| BmrFI | CCNGG | 4 cut(s) | 1518, 1752, 2550, 2870 |
| BmsI | GCATC | 8 cut(s) | 263, 589, 678, 1446, 1608, 1703, 2296, 3013 |
| BmtI | GCTAGC | 2 cut(s) | 741, 842 |
| BpiI | GAAGAC | 2 cut(s) | 186, 2065 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 183, 215, 436, 468 |
| BpmI | CTGGAG | 2 cut(s) | 1725, 2373 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 576, 2004 |
| Bpu14I | TTCGAA | 1 cut(s) | 649 |
| BpuEI | CTTGAG | 6 cut(s) | 1903, 2038, 2048, 2063, 2482, 2551 |
| BpuMI | CCSGG | 1 cut(s) | 2550 |
| Bsa29I | ATCGAT | 1 cut(s) | 2592 |
| BsaBI | GATNNNNATC | 4 cut(s) | 162, 924, 1026, 1713 |
| BsaJI | CCNNGG | 2 cut(s) | 1435, 2868 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 774, 804, 1423, 1453 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 523, 1177, 1382, 1624, 1991 |
| Bse1I | ACTGG | 3 cut(s) | 584, 937, 1582 |
| Bse3DI | GCAATG | 3 cut(s) | 125, 2381, 2915 |
| Bse8I | GATNNNNATC | 4 cut(s) | 162, 924, 1026, 1713 |
| BseBI | CCWGG | 3 cut(s) | 1518, 1752, 2870 |
| BseCI | ATCGAT | 1 cut(s) | 2592 |
| BseDI | CCNNGG | 2 cut(s) | 1435, 2868 |
| BseGI | GGATG | 7 cut(s) | 424, 580, 1461, 1694, 1760, 1981, 2878 |
| BseJI | GATNNNNATC | 4 cut(s) | 162, 924, 1026, 1713 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 523, 1177, 1382, 1624, 1991 |
| BseMI | GCAATG | 3 cut(s) | 125, 2381, 2915 |
| BseMII | CTCAG | 6 cut(s) | 807, 1275, 2136, 2224, 2436, 2634 |
| BseNI | ACTGG | 3 cut(s) | 584, 937, 1582 |
| BseRI | GAGGAG | 4 cut(s) | 22, 189, 545, 2987 |
| BseXI | GCAGC | 7 cut(s) | 117, 409, 476, 492, 1222, 2280, 2296 |
| BsgI | GTGCAG | 3 cut(s) | 416, 1221, 2388 |
| Bsh1236I | CGCG | 1 cut(s) | 94 |
| BshFI | GGCC | 4 cut(s) | 328, 786, 1409, 1750 |
| BshVI | ATCGAT | 1 cut(s) | 2592 |
| BsiHKAI | GWGCWC | 4 cut(s) | 624, 1086, 2036, 2318 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1079 |
| BsiSI | CCGG | 2 cut(s) | 954, 2550 |
| BslFI | GGGAC | 2 cut(s) | 1895, 2532 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 523, 1177, 1382, 1624, 1991 |
| BsmAI | GTCTC | 2 cut(s) | 1829, 2309 |
| BsmBI | CGTCTC | 1 cut(s) | 2309 |
| BsmFI | GGGAC | 2 cut(s) | 1895, 2532 |
| BsmI | GAATGC | 2 cut(s) | 1102, 1248 |
| BsnI | GGCC | 4 cut(s) | 328, 786, 1409, 1750 |
| BsoBI | CYCGRG | 1 cut(s) | 1079 |
| Bsp119I | TTCGAA | 1 cut(s) | 649 |
| Bsp1286I | GDGCHC | 4 cut(s) | 624, 1086, 2036, 2318 |
| Bsp1407I | TGTACA | 1 cut(s) | 117 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 576, 2004 |
| Bsp19I | CCATGG | 1 cut(s) | 1435 |
| BspACI | CCGC | 4 cut(s) | 361, 556, 722, 2959 |
| BspANI | GGCC | 4 cut(s) | 328, 786, 1409, 1750 |
| BspCNI | CTCAG | 6 cut(s) | 808, 1276, 2135, 2223, 2435, 2633 |
| BspDI | ATCGAT | 1 cut(s) | 2592 |
| BspFNI | CGCG | 1 cut(s) | 94 |
| BspHI | TCATGA | 2 cut(s) | 1543, 1602 |
| BspLI | GGNNCC | 7 cut(s) | 348, 365, 1433, 1739, 2548, 2827, 2940 |
| BspMAI | CTGCAG | 1 cut(s) | 135 |
| BspOI | GCTAGC | 2 cut(s) | 741, 842 |
| BspPI | GGATC | 7 cut(s) | 283, 341, 354, 872, 2686, 2785, 2985 |
| BspQI | GCTCTTC | 3 cut(s) | 612, 1091, 2898 |
| BspT104I | TTCGAA | 1 cut(s) | 649 |
| BsrDI | GCAATG | 3 cut(s) | 125, 2381, 2915 |
| BsrGI | TGTACA | 1 cut(s) | 117 |
| BsrI | ACTGG | 3 cut(s) | 584, 937, 1582 |
| BssECI | CCNNGG | 2 cut(s) | 1435, 2868 |
| BssNAI | GTATAC | 1 cut(s) | 1555 |
| BssT1I | CCWWGG | 1 cut(s) | 1435 |
| Bst1107I | GTATAC | 1 cut(s) | 1555 |
| Bst2UI | CCWGG | 3 cut(s) | 1518, 1752, 2870 |
| Bst4CI | ACNGT | 5 cut(s) | 497, 1688, 1823, 2702, 2801 |
| Bst6I | CTCTTC | 4 cut(s) | 40, 612, 1091, 2898 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1148 |
| BstAUI | TGTACA | 1 cut(s) | 117 |
| BstBI | TTCGAA | 1 cut(s) | 649 |
| BstC8I | GCNNGC | 3 cut(s) | 739, 840, 1149 |
| BstDSI | CCRYGG | 1 cut(s) | 1435 |
| BstF5I | GGATG | 7 cut(s) | 424, 580, 1461, 1694, 1760, 1981, 2878 |
| BstFNI | CGCG | 1 cut(s) | 94 |
| BstHHI | GCGC | 3 cut(s) | 96, 2655, 2754 |
| BstMAI | GTCTC | 2 cut(s) | 1829, 2309 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1148 |
| BstNI | CCWGG | 3 cut(s) | 1518, 1752, 2870 |
| BstNSI | RCATGY | 2 cut(s) | 1151, 1314 |
| BstSCI | CCNGG | 4 cut(s) | 1516, 1750, 2548, 2868 |
| BstSFI | CTRYAG | 3 cut(s) | 131, 797, 2165 |
| BstUI | CGCG | 1 cut(s) | 94 |
| BstV1I | GCAGC | 7 cut(s) | 117, 409, 476, 492, 1222, 2280, 2296 |
| BstV2I | GAAGAC | 2 cut(s) | 186, 2065 |
| BstX2I | RGATCY | 3 cut(s) | 288, 346, 2072 |
| BstYI | RGATCY | 3 cut(s) | 288, 346, 2072 |
| BstZ17I | GTATAC | 1 cut(s) | 1555 |
| Bsu15I | ATCGAT | 1 cut(s) | 2592 |
| BsuI | GTATCC | 1 cut(s) | 585 |
| BsuRI | GGCC | 4 cut(s) | 328, 786, 1409, 1750 |
| BsuTUI | ATCGAT | 1 cut(s) | 2592 |
| BtgI | CCRYGG | 1 cut(s) | 1435 |
| BtsCI | GGATG | 7 cut(s) | 424, 580, 1461, 1694, 1760, 1981, 2878 |
| BtsI | GCAGTG | 1 cut(s) | 849 |
| BtsIMutI | CAGTG | 4 cut(s) | 15, 234, 849, 2218 |
| Cac8I | GCNNGC | 3 cut(s) | 739, 840, 1149 |
| CciI | TCATGA | 2 cut(s) | 1543, 1602 |
| CfoI | GCGC | 3 cut(s) | 96, 2655, 2754 |
| Cfr13I | GGNCC | 5 cut(s) | 934, 1408, 2372, 2546, 2826 |
| ClaI | ATCGAT | 1 cut(s) | 2592 |
| CseI | GACGC | 1 cut(s) | 844 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2364, 2399 |
| EaeI | YGGCCR | 1 cut(s) | 326 |
| Eam1104I | CTCTTC | 4 cut(s) | 40, 612, 1091, 2898 |
| EarI | CTCTTC | 4 cut(s) | 40, 612, 1091, 2898 |
| Ecl136II | GAGCTC | 2 cut(s) | 622, 1084 |
| Eco130I | CCWWGG | 1 cut(s) | 1435 |
| Eco147I | AGGCCT | 1 cut(s) | 786 |
| Eco24I | GRGCYC | 2 cut(s) | 624, 1086 |
| Eco32I | GATATC | 1 cut(s) | 2207 |
| Eco47I | GGWCC | 4 cut(s) | 934, 2372, 2546, 2826 |
| Eco53kI | GAGCTC | 2 cut(s) | 622, 1084 |
| Eco57I | CTGAAG | 4 cut(s) | 39, 1072, 1889, 2841 |
| Eco88I | CYCGRG | 1 cut(s) | 1079 |
| EcoICRI | GAGCTC | 2 cut(s) | 622, 1084 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1408 |
| EcoRI | GAATTC | 2 cut(s) | 2347, 2850 |
| EcoRII | CCWGG | 3 cut(s) | 1516, 1750, 2868 |
| EcoRV | GATATC | 1 cut(s) | 2207 |
| EcoT14I | CCWWGG | 1 cut(s) | 1435 |
| EcoT22I | ATGCAT | 4 cut(s) | 127, 256, 1461, 1696 |
| EcoT38I | GRGCYC | 2 cut(s) | 624, 1086 |
| ErhI | CCWWGG | 1 cut(s) | 1435 |
| Esp3I | CGTCTC | 1 cut(s) | 2309 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1284, 1316 |
| FaqI | GGGAC | 2 cut(s) | 1895, 2532 |
| FbaI | TGATCA | 3 cut(s) | 1714, 2638, 2737 |
| FblI | GTMKAC | 2 cut(s) | 1554, 1963 |
| Fnu4HI | GCNGC | 8 cut(s) | 131, 398, 465, 481, 556, 1236, 2269, 2285 |
| FokI | GGATG | 7 cut(s) | 431, 567, 1468, 1681, 1767, 1968, 2885 |
| FriOI | GRGCYC | 2 cut(s) | 624, 1086 |
| Fsp4HI | GCNGC | 8 cut(s) | 131, 398, 465, 481, 556, 1236, 2269, 2285 |
| GlaI | GCGC | 3 cut(s) | 95, 2654, 2753 |
| GluI | GCNGC | 8 cut(s) | 131, 398, 465, 481, 556, 1236, 2269, 2285 |
| GsuI | CTGGAG | 2 cut(s) | 1725, 2373 |
| HaeIII | GGCC | 4 cut(s) | 328, 786, 1409, 1750 |
| HapII | CCGG | 2 cut(s) | 954, 2550 |
| HgaI | GACGC | 1 cut(s) | 844 |
| HhaI | GCGC | 3 cut(s) | 96, 2655, 2754 |
| Hin6I | GCGC | 3 cut(s) | 94, 2653, 2752 |
| HinP1I | GCGC | 3 cut(s) | 94, 2653, 2752 |
| HincII | GTYRAC | 2 cut(s) | 436, 856 |
| HindII | GTYRAC | 2 cut(s) | 436, 856 |
| HindIII | AAGCTT | 3 cut(s) | 1796, 2006, 2108 |
| HpaII | CCGG | 2 cut(s) | 954, 2550 |
| HphI | GGTGA | 4 cut(s) | 95, 395, 1497, 1639 |
| Hpy166II | GTNNAC | 6 cut(s) | 436, 856, 1156, 1495, 1555, 1964 |
| Hpy8I | GTNNAC | 6 cut(s) | 436, 856, 1156, 1495, 1555, 1964 |
| Hpy99I | CGWCG | 2 cut(s) | 603, 1623 |
| HpyAV | CCTTC | 7 cut(s) | 1111, 1181, 1225, 1282, 1837, 1995, 2816 |
| HpyCH4III | ACNGT | 5 cut(s) | 497, 1688, 1823, 2702, 2801 |
| HpyCH4IV | ACGT | 2 cut(s) | 598, 1525 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1148 |
| HpySE526I | ACGT | 2 cut(s) | 598, 1525 |
| HspAI | GCGC | 3 cut(s) | 94, 2653, 2752 |
| Ksp22I | TGATCA | 3 cut(s) | 1714, 2638, 2737 |
| LguI | GCTCTTC | 3 cut(s) | 612, 1091, 2898 |
| LmnI | GCTCC | 4 cut(s) | 1431, 2039, 2354, 3031 |
| Lsp1109I | GCAGC | 7 cut(s) | 117, 409, 476, 492, 1222, 2280, 2296 |
| LweI | GCATC | 8 cut(s) | 263, 589, 678, 1446, 1608, 1703, 2296, 3013 |
| MaeII | ACGT | 2 cut(s) | 598, 1525 |
| MaeIII | GTNAC | 5 cut(s) | 1364, 2417, 2453, 2570, 2830 |
| MfeI | CAATTG | 5 cut(s) | 207, 317, 390, 929, 1835 |
| MflI | RGATCY | 3 cut(s) | 288, 346, 2072 |
| MhlI | GDGCHC | 4 cut(s) | 624, 1086, 2036, 2318 |
| MlsI | TGGCCA | 1 cut(s) | 328 |
| MluNI | TGGCCA | 1 cut(s) | 328 |
| MlyI | GAGTC | 8 cut(s) | 1917, 2004, 2029, 2055, 2500, 2549, 2636, 2735 |
| MmeI | TCCRAC | 5 cut(s) | 760, 817, 1073, 1972, 2061 |
| Mox20I | TGGCCA | 1 cut(s) | 328 |
| Mph1103I | ATGCAT | 4 cut(s) | 127, 256, 1461, 1696 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1100, 1296, 1847, 2347 |
| MscI | TGGCCA | 1 cut(s) | 328 |
| MslI | CAYNNNNRTG | 4 cut(s) | 609, 1206, 1454, 1548 |
| Msp20I | TGGCCA | 1 cut(s) | 328 |
| MspA1I | CMGCKG | 1 cut(s) | 2426 |
| MspI | CCGG | 2 cut(s) | 954, 2550 |
| MspR9I | CCNGG | 4 cut(s) | 1518, 1752, 2550, 2870 |
| MunI | CAATTG | 5 cut(s) | 207, 317, 390, 929, 1835 |
| Mva1269I | GAATGC | 2 cut(s) | 1102, 1248 |
| MvaI | CCWGG | 3 cut(s) | 1518, 1752, 2870 |
| MvnI | CGCG | 1 cut(s) | 94 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1148 |
| NciI | CCSGG | 1 cut(s) | 2550 |
| NcoI | CCATGG | 1 cut(s) | 1435 |
| NheI | GCTAGC | 2 cut(s) | 737, 838 |
| NlaIV | GGNNCC | 7 cut(s) | 348, 365, 1433, 1739, 2548, 2827, 2940 |
| NmuCI | GTSAC | 3 cut(s) | 1364, 2453, 2830 |
| NsiI | ATGCAT | 4 cut(s) | 127, 256, 1461, 1696 |
| NspI | RCATGY | 2 cut(s) | 1151, 1314 |
| NspV | TTCGAA | 1 cut(s) | 649 |
| PaeI | GCATGC | 1 cut(s) | 1151 |
| PaeR7I | CTCGAG | 1 cut(s) | 1079 |
| PagI | TCATGA | 2 cut(s) | 1543, 1602 |
| PceI | AGGCCT | 1 cut(s) | 786 |
| PciSI | GCTCTTC | 3 cut(s) | 612, 1091, 2898 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1615 |
| PctI | GAATGC | 2 cut(s) | 1102, 1248 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1100, 1296, 1847, 2347 |
| PflFI | GACNNNGTC | 1 cut(s) | 1376 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 523 |
| PkrI | GCNGC | 8 cut(s) | 132, 399, 466, 482, 557, 1237, 2270, 2286 |
| PleI | GAGTC | 8 cut(s) | 1916, 2003, 2028, 2055, 2500, 2548, 2635, 2734 |
| PpsI | GAGTC | 8 cut(s) | 1916, 2003, 2028, 2055, 2500, 2548, 2635, 2734 |
| PshBI | ATTAAT | 1 cut(s) | 2228 |
| PsiI | TTATAA | 3 cut(s) | 711, 1682, 2468 |
| Psp124BI | GAGCTC | 2 cut(s) | 624, 1086 |
| Psp6I | CCWGG | 3 cut(s) | 1516, 1750, 2868 |
| PspGI | CCWGG | 3 cut(s) | 1516, 1750, 2868 |
| PspN4I | GGNNCC | 7 cut(s) | 348, 365, 1433, 1739, 2548, 2827, 2940 |
| PspPI | GGNCC | 5 cut(s) | 934, 1408, 2372, 2546, 2826 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1545, 1577 |
| PstI | CTGCAG | 1 cut(s) | 135 |
| PsuI | RGATCY | 3 cut(s) | 288, 346, 2072 |
| PsyI | GACNNNGTC | 1 cut(s) | 1376 |
| PvuII | CAGCTG | 1 cut(s) | 2426 |
| RseI | CAYNNNNRTG | 4 cut(s) | 609, 1206, 1454, 1548 |
| SacI | GAGCTC | 2 cut(s) | 624, 1086 |
| SapI | GCTCTTC | 3 cut(s) | 612, 1091, 2898 |
| SatI | GCNGC | 8 cut(s) | 131, 398, 465, 481, 556, 1236, 2269, 2285 |
| Sau96I | GGNCC | 5 cut(s) | 934, 1408, 2372, 2546, 2826 |
| ScaI | AGTACT | 5 cut(s) | 1395, 2635, 2734, 2923, 3007 |
| SchI | GAGTC | 8 cut(s) | 1917, 2004, 2029, 2055, 2500, 2549, 2636, 2735 |
| ScrFI | CCNGG | 4 cut(s) | 1518, 1752, 2550, 2870 |
| SduI | GDGCHC | 4 cut(s) | 624, 1086, 2036, 2318 |
| SfaNI | GCATC | 8 cut(s) | 263, 589, 678, 1446, 1608, 1703, 2296, 3013 |
| SfcI | CTRYAG | 3 cut(s) | 131, 797, 2165 |
| Sfr274I | CTCGAG | 1 cut(s) | 1079 |
| SfuI | TTCGAA | 1 cut(s) | 649 |
| SinI | GGWCC | 4 cut(s) | 934, 2372, 2546, 2826 |
| SlaI | CTCGAG | 1 cut(s) | 1079 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 609, 1206, 1454, 1548 |
| SmlI | CTYRAG | 7 cut(s) | 1079, 1882, 2017, 2042, 2063, 2497, 2566 |
| SmoI | CTYRAG | 7 cut(s) | 1079, 1882, 2017, 2042, 2063, 2497, 2566 |
| SphI | GCATGC | 1 cut(s) | 1151 |
| SseBI | AGGCCT | 1 cut(s) | 786 |
| SsiI | CCGC | 4 cut(s) | 361, 556, 722, 2959 |
| SspI | AATATT | 1 cut(s) | 2226 |
| SstI | GAGCTC | 2 cut(s) | 624, 1086 |
| StuI | AGGCCT | 1 cut(s) | 786 |
| StyD4I | CCNGG | 4 cut(s) | 1516, 1750, 2548, 2868 |
| StyI | CCWWGG | 1 cut(s) | 1435 |
| TaaI | ACNGT | 5 cut(s) | 497, 1688, 1823, 2702, 2801 |
| TaiI | ACGT | 2 cut(s) | 601, 1528 |
| TaqI | TCGA | 6 cut(s) | 649, 1080, 2198, 2235, 2592, 2953 |
| TatI | WGTACW | 8 cut(s) | 117, 1393, 1492, 1804, 2633, 2732, 2921, 3005 |
| TauI | GCSGC | 1 cut(s) | 558 |
| TscAI | CASTG | 4 cut(s) | 22, 234, 849, 2218 |
| TseFI | GTSAC | 3 cut(s) | 1364, 2453, 2830 |
| TseI | GCWGC | 7 cut(s) | 130, 397, 464, 480, 1235, 2268, 2284 |
| Tsp45I | GTSAC | 3 cut(s) | 1364, 2453, 2830 |
| TspGWI | ACGGA | 2 cut(s) | 529, 2818 |
| TspRI | CASTG | 4 cut(s) | 22, 234, 849, 2218 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1376 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 523 |
| VpaK11BI | GGWCC | 4 cut(s) | 934, 2372, 2546, 2826 |
| VspI | ATTAAT | 1 cut(s) | 2228 |
| XapI | RAATTY | 7 cut(s) | 509, 1673, 2330, 2347, 2556, 2597, 2850 |
| XbaI | TCTAGA | 1 cut(s) | 2077 |
| XceI | RCATGY | 2 cut(s) | 1151, 1314 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2484 |
| XhoI | CTCGAG | 1 cut(s) | 1079 |
| XmiI | GTMKAC | 2 cut(s) | 1554, 1963 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1100, 1296, 1847, 2347 |
| ZrmI | AGTACT | 5 cut(s) | 1395, 2635, 2734, 2923, 3007 |
| Zsp2I | ATGCAT | 4 cut(s) | 127, 256, 1461, 1696 |