regulation of response to stimulus
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 46 - 203 | 2.6e-20 | NB-ARC domain |
| NACHT | PF05729 | 52 - 197 | 6.1e-06 | NACHT domain |
| WHD_ROQ1 | PF23282 | 272 - 341 | 9.1e-13 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 542 - 763 | 1e-16 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 5 cut(s) | 210, 374, 947, 1199, 2640 |
| Acc16I | TGCGCA | 1 cut(s) | 2792 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2834 |
| AccBSI | CCGCTC | 2 cut(s) | 1042, 2591 |
| AccIII | TCCGGA | 2 cut(s) | 1478, 2095 |
| AciI | CCGC | 3 cut(s) | 1042, 2591, 2772 |
| AclI | AACGTT | 1 cut(s) | 1780 |
| AclWI | GGATC | 6 cut(s) | 898, 1287, 1300, 1623, 2838, 2851 |
| AcoI | YGGCCR | 1 cut(s) | 72 |
| AcyI | GRCGYC | 1 cut(s) | 2257 |
| AdeI | CACNNNGTG | 1 cut(s) | 644 |
| AfaI | GTAC | 8 cut(s) | 48, 780, 906, 1073, 1570, 2445, 3003, 3007 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 179, 764, 1882, 2752, 2834 |
| AflIII | ACRYGT | 1 cut(s) | 325 |
| AjiI | CACGTC | 1 cut(s) | 644 |
| AjnI | CCWGG | 4 cut(s) | 172, 246, 1033, 2374 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 384, 416 |
| AluBI | AGCT | 9 cut(s) | 203, 535, 572, 580, 677, 1167, 1641, 2403, 2678 |
| AluI | AGCT | 9 cut(s) | 203, 535, 572, 580, 677, 1167, 1641, 2403, 2678 |
| Alw21I | GWGCWC | 2 cut(s) | 1592, 2781 |
| Alw26I | GTCTC | 3 cut(s) | 817, 1609, 2519 |
| Alw44I | GTGCAC | 1 cut(s) | 2777 |
| AlwI | GGATC | 6 cut(s) | 898, 1287, 1300, 1623, 2838, 2851 |
| Ama87I | CYCGRG | 1 cut(s) | 2245 |
| Aor13HI | TCCGGA | 2 cut(s) | 1478, 2095 |
| AoxI | GGCC | 6 cut(s) | 72, 664, 1689, 1960, 2567, 2888 |
| ApaLI | GTGCAC | 1 cut(s) | 2777 |
| ApeKI | GCWGC | 1 cut(s) | 2145 |
| AseI | ATTAAT | 1 cut(s) | 11 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 94, 596, 1464, 2808 |
| AspLEI | GCGC | 1 cut(s) | 2793 |
| AspS9I | GGNCC | 3 cut(s) | 547, 2046, 2825 |
| AsuC2I | CCSGG | 1 cut(s) | 2715 |
| AsuHPI | GGTGA | 5 cut(s) | 124, 482, 866, 1135, 1897 |
| AsuII | TTCGAA | 2 cut(s) | 2017, 2903 |
| AvaI | CYCGRG | 1 cut(s) | 2245 |
| AvaII | GGWCC | 3 cut(s) | 547, 2046, 2825 |
| BaeGI | GKGCMC | 1 cut(s) | 2781 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1918, 1951 |
| BalI | TGGCCA | 1 cut(s) | 74 |
| BamHI | GGATCC | 2 cut(s) | 1292, 2843 |
| BanII | GRGCYC | 1 cut(s) | 2691 |
| BbsI | GAAGAC | 3 cut(s) | 567, 2027, 2084 |
| Bbv12I | GWGCWC | 2 cut(s) | 1592, 2781 |
| BbvI | GCAGC | 1 cut(s) | 2132 |
| BccI | CCATC | 9 cut(s) | 47, 468, 988, 1171, 1268, 1690, 1862, 2035, 2917 |
| BceAI | ACGGC | 4 cut(s) | 1931, 2248, 2582, 2822 |
| BciT130I | CCWGG | 4 cut(s) | 174, 248, 1035, 2376 |
| BciVI | GTATCC | 2 cut(s) | 1946, 2382 |
| BclI | TGATCA | 3 cut(s) | 486, 2917, 2941 |
| BcnI | CCSGG | 1 cut(s) | 2715 |
| BcoDI | GTCTC | 3 cut(s) | 817, 1609, 2519 |
| BfaI | CTAG | 4 cut(s) | 515, 830, 986, 1593 |
| BfuI | GTATCC | 2 cut(s) | 1946, 2382 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2248 |
| BglII | AGATCT | 2 cut(s) | 304, 2059 |
| BisI | GCNGC | 1 cut(s) | 2146 |
| BlsI | GCNGC | 1 cut(s) | 2147 |
| BmcAI | AGTACT | 2 cut(s) | 48, 780 |
| Bme1390I | CCNGG | 5 cut(s) | 174, 248, 1035, 2376, 2715 |
| Bme18I | GGWCC | 3 cut(s) | 547, 2046, 2825 |
| BmeT110I | CYCGRG | 1 cut(s) | 2245 |
| BmgBI | CACGTC | 1 cut(s) | 644 |
| BmgT120I | GGNCC | 3 cut(s) | 547, 2046, 2825 |
| BmiI | GGNNCC | 5 cut(s) | 1294, 1447, 1841, 2826, 2845 |
| BmrFI | CCNGG | 5 cut(s) | 174, 248, 1035, 2376, 2715 |
| BmrI | ACTGGG | 3 cut(s) | 77, 1297, 1779 |
| BmsI | GCATC | 9 cut(s) | 913, 963, 1066, 1214, 1363, 1862, 1970, 2339, 2443 |
| BmuI | ACTGGG | 3 cut(s) | 77, 1297, 1779 |
| BpiI | GAAGAC | 3 cut(s) | 567, 2027, 2084 |
| BpmI | CTGGAG | 1 cut(s) | 600 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2252 |
| Bpu14I | TTCGAA | 2 cut(s) | 2017, 2903 |
| BpuEI | CTTGAG | 4 cut(s) | 596, 645, 1619, 1652 |
| BpuMI | CCSGG | 1 cut(s) | 2715 |
| BsaAI | YACGTR | 3 cut(s) | 326, 2370, 3005 |
| BsaBI | GATNNNNATC | 5 cut(s) | 271, 354, 1627, 2064, 2919 |
| BsaHI | GRCGYC | 1 cut(s) | 2257 |
| BsaJI | CCNNGG | 3 cut(s) | 801, 2244, 2564 |
| BsaWI | WCCGGW | 2 cut(s) | 1478, 2095 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 179, 764, 1882, 2752, 2834 |
| Bse118I | RCCGGY | 1 cut(s) | 1962 |
| Bse1I | ACTGG | 7 cut(s) | 83, 1139, 1292, 1774, 1887, 2031, 2333 |
| Bse3DI | GCAATG | 3 cut(s) | 834, 1425, 2038 |
| Bse8I | GATNNNNATC | 5 cut(s) | 271, 354, 1627, 2064, 2919 |
| BseAI | TCCGGA | 2 cut(s) | 1478, 2095 |
| BseBI | CCWGG | 4 cut(s) | 174, 248, 1035, 2376 |
| BseDI | CCNNGG | 3 cut(s) | 801, 2244, 2564 |
| BseGI | GGATG | 7 cut(s) | 1229, 1873, 1877, 1985, 2027, 2212, 2920 |
| BseJI | GATNNNNATC | 5 cut(s) | 271, 354, 1627, 2064, 2919 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 179, 764, 1882, 2752, 2834 |
| BseMI | GCAATG | 3 cut(s) | 834, 1425, 2038 |
| BseMII | CTCAG | 1 cut(s) | 2862 |
| BseNI | ACTGG | 7 cut(s) | 83, 1139, 1292, 1774, 1887, 2031, 2333 |
| BseRI | GAGGAG | 2 cut(s) | 2981, 2984 |
| BseSI | GKGCMC | 1 cut(s) | 2781 |
| BseXI | GCAGC | 1 cut(s) | 2132 |
| BshFI | GGCC | 6 cut(s) | 74, 666, 1691, 1962, 2569, 2890 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1592, 2781 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2245 |
| BsiSI | CCGG | 4 cut(s) | 1479, 1963, 2096, 2714 |
| BslFI | GGGAC | 4 cut(s) | 181, 645, 2729, 2838 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 179, 764, 1882, 2752, 2834 |
| BsmAI | GTCTC | 3 cut(s) | 817, 1609, 2519 |
| BsmBI | CGTCTC | 1 cut(s) | 2519 |
| BsmFI | GGGAC | 4 cut(s) | 181, 645, 2729, 2838 |
| BsmI | GAATGC | 4 cut(s) | 598, 943, 1162, 1322 |
| BsnI | GGCC | 6 cut(s) | 74, 666, 1691, 1962, 2569, 2890 |
| BsoBI | CYCGRG | 1 cut(s) | 2245 |
| Bsp119I | TTCGAA | 2 cut(s) | 2017, 2903 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1592, 2691, 2781 |
| Bsp13I | TCCGGA | 2 cut(s) | 1478, 2095 |
| BspACI | CCGC | 3 cut(s) | 1042, 2591, 2772 |
| BspANI | GGCC | 6 cut(s) | 74, 666, 1691, 1962, 2569, 2890 |
| BspCNI | CTCAG | 1 cut(s) | 2861 |
| BspEI | TCCGGA | 2 cut(s) | 1478, 2095 |
| BspHI | TCATGA | 3 cut(s) | 223, 1060, 1282 |
| BspLI | GGNNCC | 5 cut(s) | 1294, 1447, 1841, 2826, 2845 |
| BspPI | GGATC | 6 cut(s) | 898, 1287, 1300, 1623, 2838, 2851 |
| BspT104I | TTCGAA | 2 cut(s) | 2017, 2903 |
| BsrBI | CCGCTC | 2 cut(s) | 1042, 2591 |
| BsrDI | GCAATG | 3 cut(s) | 834, 1425, 2038 |
| BsrFI | RCCGGY | 1 cut(s) | 1962 |
| BsrI | ACTGG | 7 cut(s) | 83, 1139, 1292, 1774, 1887, 2031, 2333 |
| BssAI | RCCGGY | 1 cut(s) | 1962 |
| BssECI | CCNNGG | 3 cut(s) | 801, 2244, 2564 |
| BssNI | GRCGYC | 1 cut(s) | 2257 |
| BssT1I | CCWWGG | 1 cut(s) | 801 |
| Bst2UI | CCWGG | 4 cut(s) | 174, 248, 1035, 2376 |
| Bst4CI | ACNGT | 5 cut(s) | 384, 1076, 1382, 1813, 1934 |
| Bst6I | CTCTTC | 1 cut(s) | 2019 |
| BstACI | GRCGYC | 1 cut(s) | 2257 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 644, 982 |
| BstBAI | YACGTR | 3 cut(s) | 326, 2370, 3005 |
| BstBI | TTCGAA | 2 cut(s) | 2017, 2903 |
| BstC8I | GCNNGC | 5 cut(s) | 841, 1040, 1964, 2758, 2933 |
| BstDSI | CCRYGG | 1 cut(s) | 2564 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 177, 762 |
| BstF5I | GGATG | 7 cut(s) | 1229, 1873, 1877, 1985, 2027, 2212, 2920 |
| BstHHI | GCGC | 1 cut(s) | 2793 |
| BstMAI | GTCTC | 3 cut(s) | 817, 1609, 2519 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 644, 982, 1044, 2137, 2248 |
| BstNI | CCWGG | 4 cut(s) | 174, 248, 1035, 2376 |
| BstNSI | RCATGY | 2 cut(s) | 843, 2174 |
| BstSCI | CCNGG | 5 cut(s) | 172, 246, 1033, 2374, 2713 |
| BstSLI | GKGCMC | 1 cut(s) | 2781 |
| BstSNI | TACGTA | 2 cut(s) | 2370, 3005 |
| BstV1I | GCAGC | 1 cut(s) | 2132 |
| BstV2I | GAAGAC | 3 cut(s) | 567, 2027, 2084 |
| BstX2I | RGATCY | 5 cut(s) | 304, 1292, 1628, 2059, 2843 |
| BstYI | RGATCY | 5 cut(s) | 304, 1292, 1628, 2059, 2843 |
| BsuI | GTATCC | 2 cut(s) | 1946, 2382 |
| BsuRI | GGCC | 6 cut(s) | 74, 666, 1691, 1962, 2569, 2890 |
| BtgI | CCRYGG | 1 cut(s) | 2564 |
| BtgZI | GCGATG | 2 cut(s) | 2307, 2394 |
| BtrI | CACGTC | 1 cut(s) | 644 |
| BtsCI | GGATG | 7 cut(s) | 1229, 1873, 1877, 1985, 2027, 2212, 2920 |
| BtsIMutI | CAGTG | 2 cut(s) | 1026, 1387 |
| Cac8I | GCNNGC | 5 cut(s) | 841, 1040, 1964, 2758, 2933 |
| CciI | TCATGA | 3 cut(s) | 223, 1060, 1282 |
| CfoI | GCGC | 1 cut(s) | 2793 |
| Cfr10I | RCCGGY | 1 cut(s) | 1962 |
| Cfr13I | GGNCC | 3 cut(s) | 547, 2046, 2825 |
| CseI | GACGC | 1 cut(s) | 2246 |
| Csp6I | GTAC | 8 cut(s) | 47, 779, 905, 1072, 1569, 2444, 3002, 3006 |
| CviQI | GTAC | 8 cut(s) | 47, 779, 905, 1072, 1569, 2444, 3002, 3006 |
| DraIII | CACNNNGTG | 1 cut(s) | 644 |
| EaeI | YGGCCR | 1 cut(s) | 72 |
| Eam1104I | CTCTTC | 1 cut(s) | 2019 |
| EarI | CTCTTC | 1 cut(s) | 2019 |
| Eco105I | TACGTA | 2 cut(s) | 2370, 3005 |
| Eco130I | CCWWGG | 1 cut(s) | 801 |
| Eco147I | AGGCCT | 1 cut(s) | 666 |
| Eco24I | GRGCYC | 1 cut(s) | 2691 |
| Eco32I | GATATC | 1 cut(s) | 2854 |
| Eco47I | GGWCC | 3 cut(s) | 547, 2046, 2825 |
| Eco88I | CYCGRG | 1 cut(s) | 2245 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 177, 762 |
| EcoRI | GAATTC | 1 cut(s) | 1262 |
| EcoRII | CCWGG | 4 cut(s) | 172, 246, 1033, 2374 |
| EcoRV | GATATC | 1 cut(s) | 2854 |
| EcoT14I | CCWWGG | 1 cut(s) | 801 |
| EcoT22I | ATGCAT | 3 cut(s) | 978, 1229, 2669 |
| EcoT38I | GRGCYC | 1 cut(s) | 2691 |
| ErhI | CCWWGG | 1 cut(s) | 801 |
| Esp3I | CGTCTC | 1 cut(s) | 2519 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 294, 326, 389, 421 |
| FaqI | GGGAC | 4 cut(s) | 181, 645, 2729, 2838 |
| FauI | CCCGC | 2 cut(s) | 2584, 2765 |
| FbaI | TGATCA | 3 cut(s) | 486, 2917, 2941 |
| Fnu4HI | GCNGC | 1 cut(s) | 2146 |
| FokI | GGATG | 7 cut(s) | 1236, 1880, 1884, 1992, 2014, 2219, 2927 |
| FriOI | GRGCYC | 1 cut(s) | 2691 |
| Fsp4HI | GCNGC | 1 cut(s) | 2146 |
| FspBI | CTAG | 4 cut(s) | 515, 830, 986, 1593 |
| FspI | TGCGCA | 1 cut(s) | 2792 |
| GlaI | GCGC | 1 cut(s) | 2792 |
| GluI | GCNGC | 1 cut(s) | 2146 |
| GsuI | CTGGAG | 1 cut(s) | 600 |
| HaeIII | GGCC | 6 cut(s) | 74, 666, 1691, 1962, 2569, 2890 |
| HapII | CCGG | 4 cut(s) | 1479, 1963, 2096, 2714 |
| HgaI | GACGC | 1 cut(s) | 2246 |
| HhaI | GCGC | 1 cut(s) | 2793 |
| Hin1I | GRCGYC | 1 cut(s) | 2257 |
| Hin6I | GCGC | 1 cut(s) | 2791 |
| HinP1I | GCGC | 1 cut(s) | 2791 |
| HincII | GTYRAC | 3 cut(s) | 911, 2119, 2268 |
| HindII | GTYRAC | 3 cut(s) | 911, 2119, 2268 |
| HindIII | AAGCTT | 2 cut(s) | 1165, 1639 |
| HpaII | CCGG | 4 cut(s) | 1479, 1963, 2096, 2714 |
| HphI | GGTGA | 5 cut(s) | 124, 482, 866, 1135, 1897 |
| Hpy166II | GTNNAC | 9 cut(s) | 289, 911, 1072, 2049, 2119, 2268, 2444, 2779, 2988 |
| Hpy8I | GTNNAC | 9 cut(s) | 289, 911, 1072, 2049, 2119, 2268, 2444, 2779, 2988 |
| Hpy99I | CGWCG | 4 cut(s) | 645, 1247, 1615, 2861 |
| HpyAV | CCTTC | 9 cut(s) | 227, 467, 607, 1393, 1758, 2119, 2186, 2901, 2964 |
| HpyCH4III | ACNGT | 5 cut(s) | 384, 1076, 1382, 1813, 1934 |
| HpyCH4IV | ACGT | 9 cut(s) | 325, 643, 907, 1364, 1780, 1956, 2369, 2528, 3004 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 644, 982, 1044, 2137, 2248 |
| HpySE526I | ACGT | 9 cut(s) | 325, 643, 907, 1364, 1780, 1956, 2369, 2528, 3004 |
| Hsp92I | GRCGYC | 1 cut(s) | 2257 |
| HspAI | GCGC | 1 cut(s) | 2791 |
| Kpn2I | TCCGGA | 2 cut(s) | 1478, 2095 |
| KroI | GCCGGC | 1 cut(s) | 1962 |
| KroNI | GCCGGC | 1 cut(s) | 1964 |
| Ksp22I | TGATCA | 3 cut(s) | 486, 2917, 2941 |
| LmnI | GCTCC | 4 cut(s) | 433, 1044, 2588, 2971 |
| Lsp1109I | GCAGC | 1 cut(s) | 2132 |
| LweI | GCATC | 9 cut(s) | 913, 963, 1066, 1214, 1363, 1862, 1970, 2339, 2443 |
| MaeI | CTAG | 4 cut(s) | 515, 830, 986, 1593 |
| MaeII | ACGT | 9 cut(s) | 325, 643, 907, 1364, 1780, 1956, 2369, 2528, 3004 |
| MaeIII | GTNAC | 8 cut(s) | 4, 328, 743, 1360, 1382, 1813, 1885, 2365 |
| MbiI | CCGCTC | 2 cut(s) | 1042, 2591 |
| MfeI | CAATTG | 7 cut(s) | 192, 216, 1339, 1394, 1755, 2357, 2981 |
| MflI | RGATCY | 5 cut(s) | 304, 1292, 1628, 2059, 2843 |
| MhlI | GDGCHC | 3 cut(s) | 1592, 2691, 2781 |
| MlsI | TGGCCA | 1 cut(s) | 74 |
| MluNI | TGGCCA | 1 cut(s) | 74 |
| MlyI | GAGTC | 1 cut(s) | 627 |
| MmeI | TCCRAC | 6 cut(s) | 67, 112, 569, 1528, 1867, 2289 |
| Mox20I | TGGCCA | 1 cut(s) | 74 |
| Mph1103I | ATGCAT | 3 cut(s) | 978, 1229, 2669 |
| MroI | TCCGGA | 2 cut(s) | 1478, 2095 |
| MroNI | GCCGGC | 1 cut(s) | 1962 |
| MroXI | GAANNNNTTC | 4 cut(s) | 94, 596, 1464, 2808 |
| MscI | TGGCCA | 1 cut(s) | 74 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1065, 1121, 1833, 2696 |
| Msp20I | TGGCCA | 1 cut(s) | 74 |
| MspI | CCGG | 4 cut(s) | 1479, 1963, 2096, 2714 |
| MspR9I | CCNGG | 5 cut(s) | 174, 248, 1035, 2376, 2715 |
| MunI | CAATTG | 7 cut(s) | 192, 216, 1339, 1394, 1755, 2357, 2981 |
| Mva1269I | GAATGC | 4 cut(s) | 598, 943, 1162, 1322 |
| MvaI | CCWGG | 4 cut(s) | 174, 248, 1035, 2376 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 644, 982, 1044, 2137, 2248 |
| NaeI | GCCGGC | 1 cut(s) | 1964 |
| NciI | CCSGG | 1 cut(s) | 2715 |
| NgoMIV | GCCGGC | 1 cut(s) | 1962 |
| NlaIV | GGNNCC | 5 cut(s) | 1294, 1447, 1841, 2826, 2845 |
| NmeAIII | GCCGAG | 1 cut(s) | 1717 |
| NmuCI | GTSAC | 3 cut(s) | 1360, 1382, 1885 |
| NsbI | TGCGCA | 1 cut(s) | 2792 |
| NsiI | ATGCAT | 3 cut(s) | 978, 1229, 2669 |
| NspI | RCATGY | 2 cut(s) | 843, 2174 |
| NspV | TTCGAA | 2 cut(s) | 2017, 2903 |
| PaeI | GCATGC | 1 cut(s) | 843 |
| PagI | TCATGA | 3 cut(s) | 223, 1060, 1282 |
| PceI | AGGCCT | 1 cut(s) | 666 |
| PctI | GAATGC | 4 cut(s) | 598, 943, 1162, 1322 |
| PdiI | GCCGGC | 1 cut(s) | 1964 |
| PdmI | GAANNNNTTC | 4 cut(s) | 94, 596, 1464, 2808 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2834 |
| PkrI | GCNGC | 1 cut(s) | 2147 |
| PleI | GAGTC | 1 cut(s) | 627 |
| PpsI | GAGTC | 1 cut(s) | 627 |
| Ppu21I | YACGTR | 3 cut(s) | 326, 2370, 3005 |
| PshBI | ATTAAT | 1 cut(s) | 11 |
| PsiI | TTATAA | 5 cut(s) | 210, 374, 947, 1199, 2640 |
| Psp1406I | AACGTT | 1 cut(s) | 1780 |
| Psp6I | CCWGG | 4 cut(s) | 172, 246, 1033, 2374 |
| PspGI | CCWGG | 4 cut(s) | 172, 246, 1033, 2374 |
| PspN4I | GGNNCC | 5 cut(s) | 1294, 1447, 1841, 2826, 2845 |
| PspPI | GGNCC | 3 cut(s) | 547, 2046, 2825 |
| PsuI | RGATCY | 5 cut(s) | 304, 1292, 1628, 2059, 2843 |
| RsaI | GTAC | 8 cut(s) | 48, 780, 906, 1073, 1570, 2445, 3003, 3007 |
| RsaNI | GTAC | 8 cut(s) | 47, 779, 905, 1072, 1569, 2444, 3002, 3006 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1065, 1121, 1833, 2696 |
| SatI | GCNGC | 1 cut(s) | 2146 |
| Sau96I | GGNCC | 3 cut(s) | 547, 2046, 2825 |
| ScaI | AGTACT | 2 cut(s) | 48, 780 |
| SchI | GAGTC | 1 cut(s) | 627 |
| ScrFI | CCNGG | 5 cut(s) | 174, 248, 1035, 2376, 2715 |
| SduI | GDGCHC | 3 cut(s) | 1592, 2691, 2781 |
| SfaNI | GCATC | 9 cut(s) | 913, 963, 1066, 1214, 1363, 1862, 1970, 2339, 2443 |
| SfuI | TTCGAA | 2 cut(s) | 2017, 2903 |
| SinI | GGWCC | 3 cut(s) | 547, 2046, 2825 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1065, 1121, 1833, 2696 |
| SmlI | CTYRAG | 4 cut(s) | 575, 660, 1598, 1667 |
| SmoI | CTYRAG | 4 cut(s) | 575, 660, 1598, 1667 |
| SnaBI | TACGTA | 2 cut(s) | 2370, 3005 |
| SphI | GCATGC | 1 cut(s) | 843 |
| SseBI | AGGCCT | 1 cut(s) | 666 |
| SsiI | CCGC | 3 cut(s) | 1042, 2591, 2772 |
| SspI | AATATT | 2 cut(s) | 1300, 2962 |
| SspMI | CTAG | 4 cut(s) | 515, 830, 986, 1593 |
| StuI | AGGCCT | 1 cut(s) | 666 |
| StyD4I | CCNGG | 5 cut(s) | 172, 246, 1033, 2374, 2713 |
| StyI | CCWWGG | 1 cut(s) | 801 |
| TaaI | ACNGT | 5 cut(s) | 384, 1076, 1382, 1813, 1934 |
| TaiI | ACGT | 9 cut(s) | 328, 646, 910, 1367, 1783, 1959, 2372, 2531, 3007 |
| TaqI | TCGA | 6 cut(s) | 269, 1851, 2017, 2072, 2859, 2903 |
| TatI | WGTACW | 2 cut(s) | 46, 778 |
| TscAI | CASTG | 2 cut(s) | 1033, 1387 |
| TseFI | GTSAC | 3 cut(s) | 1360, 1382, 1885 |
| TseI | GCWGC | 1 cut(s) | 2145 |
| Tsp45I | GTSAC | 3 cut(s) | 1360, 1382, 1885 |
| TspRI | CASTG | 2 cut(s) | 1033, 1387 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2834 |
| VneI | GTGCAC | 1 cut(s) | 2777 |
| VpaK11BI | GGWCC | 3 cut(s) | 547, 2046, 2825 |
| VspI | ATTAAT | 1 cut(s) | 11 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 177, 762 |
| XceI | RCATGY | 2 cut(s) | 843, 2174 |
| XmnI | GAANNNNTTC | 4 cut(s) | 94, 596, 1464, 2808 |
| XspI | CTAG | 4 cut(s) | 515, 830, 986, 1593 |
| ZrmI | AGTACT | 2 cut(s) | 48, 780 |
| Zsp2I | ATGCAT | 3 cut(s) | 978, 1229, 2669 |