TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 31 - 192 | 5.1e-55 | TIR domain |
| TIR_2 | PF13676 | 33 - 128 | 1.3e-15 | TIR domain |
| NB-ARC | PF00931 | 217 - 376 | 4.4e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 448 - 519 | 4.4e-11 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 574 - 690 | 8.7e-10 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 660 - 840 | 3.7e-13 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 687 - 772 | 5.9e-06 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 784 - 914 | 2e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 839 - 924 | 6.5e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 908 - 1034 | 2.1e-10 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 910 - 994 | 4.1e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_13 | PF23286 | 981 - 1130 | 8e-15 | Disease resistance protein RPS4B-like, leucine-rich repeats |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 893 |
| AarI | CACCTGC | 1 cut(s) | 4328 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 4646 |
| Acc16I | TGCGCA | 1 cut(s) | 866 |
| Acc36I | ACCTGC | 3 cut(s) | 3952, 4328, 4930 |
| Acc65I | GGTACC | 1 cut(s) | 4918 |
| AccB1I | GGYRCC | 3 cut(s) | 3723, 4124, 4918 |
| AccBSI | CCGCTC | 1 cut(s) | 2757 |
| AccI | GTMKAC | 6 cut(s) | 152, 439, 637, 1062, 1389, 2920 |
| AccII | CGCG | 3 cut(s) | 127, 3270, 4214 |
| AccIII | TCCGGA | 1 cut(s) | 4361 |
| AclI | AACGTT | 1 cut(s) | 1030 |
| AcoI | YGGCCR | 2 cut(s) | 3936, 4389 |
| AcuI | CTGAAG | 4 cut(s) | 39, 169, 4865, 4896 |
| AcyI | GRCGYC | 1 cut(s) | 3724 |
| AdeI | CACNNNGTG | 2 cut(s) | 1166, 4304 |
| AfaI | GTAC | 8 cut(s) | 393, 1173, 1407, 2083, 3486, 3562, 4606, 4920 |
| AflII | CTTAAG | 2 cut(s) | 1760, 2059 |
| AflIII | ACRYGT | 3 cut(s) | 125, 388, 3563 |
| AgeI | ACCGGT | 1 cut(s) | 525 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 644 |
| AhlI | ACTAGT | 1 cut(s) | 3250 |
| AjiI | CACGTC | 2 cut(s) | 940, 1166 |
| AjnI | CCWGG | 4 cut(s) | 428, 1235, 4173, 4835 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 603, 635 |
| Alw21I | GWGCWC | 2 cut(s) | 231, 4311 |
| Alw26I | GTCTC | 8 cut(s) | 173, 183, 817, 1481, 1989, 2526, 4593, 5198 |
| Ama87I | CYCGRG | 2 cut(s) | 573, 3491 |
| Aor13HI | TCCGGA | 1 cut(s) | 4361 |
| AoxI | GGCC | 9 cut(s) | 802, 1186, 1464, 1663, 3550, 3936, 4389, 4533, 5040 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 3606, 3638, 4235, 4267 |
| AseI | ATTAAT | 2 cut(s) | 3341, 4982 |
| AsiGI | ACCGGT | 1 cut(s) | 525 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3971 |
| Asp718I | GGTACC | 1 cut(s) | 4918 |
| AspLEI | GCGC | 3 cut(s) | 867, 3726, 4852 |
| AspS9I | GGNCC | 6 cut(s) | 528, 847, 3551, 4283, 4691, 5041 |
| AsuC2I | CCSGG | 1 cut(s) | 3472 |
| AsuHPI | GGTGA | 8 cut(s) | 65, 428, 1574, 1822, 2359, 3878, 4290, 5213 |
| AsuII | TTCGAA | 2 cut(s) | 2113, 3524 |
| AvaI | CYCGRG | 2 cut(s) | 573, 3491 |
| AvaII | GGWCC | 4 cut(s) | 528, 847, 4283, 4691 |
| BalI | TGGCCA | 1 cut(s) | 4391 |
| BamHI | GGATCC | 3 cut(s) | 379, 1904, 2441 |
| BanI | GGYRCC | 3 cut(s) | 3723, 4124, 4918 |
| BanII | GRGCYC | 2 cut(s) | 231, 4558 |
| BauI | CACGAG | 1 cut(s) | 2622 |
| BbsI | GAAGAC | 6 cut(s) | 91, 219, 262, 528, 1132, 4176 |
| Bbv12I | GWGCWC | 2 cut(s) | 231, 4311 |
| BceAI | ACGGC | 4 cut(s) | 741, 3765, 4309, 4670 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 5016, 5050 |
| BciT130I | CCWGG | 4 cut(s) | 430, 1237, 4175, 4837 |
| BciVI | GTATCC | 3 cut(s) | 115, 1340, 4843 |
| BclI | TGATCA | 1 cut(s) | 70 |
| BcnI | CCSGG | 1 cut(s) | 3472 |
| BcoDI | GTCTC | 8 cut(s) | 173, 183, 817, 1481, 1989, 2526, 4593, 5198 |
| BcuI | ACTAGT | 1 cut(s) | 3250 |
| BfmI | CTRYAG | 2 cut(s) | 634, 3303 |
| BfoI | RGCGCY | 1 cut(s) | 3727 |
| BfrI | CTTAAG | 2 cut(s) | 1760, 2059 |
| BfuAI | ACCTGC | 3 cut(s) | 3952, 4328, 4930 |
| BfuI | GTATCC | 3 cut(s) | 115, 1340, 4843 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3721 |
| BglII | AGATCT | 3 cut(s) | 2908, 3121, 4031 |
| BlpI | GCTNAGC | 1 cut(s) | 5007 |
| BmcAI | AGTACT | 1 cut(s) | 1407 |
| Bme1390I | CCNGG | 5 cut(s) | 430, 1237, 3472, 4175, 4837 |
| Bme18I | GGWCC | 4 cut(s) | 528, 847, 4283, 4691 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 644 |
| BmeT110I | CYCGRG | 2 cut(s) | 573, 3491 |
| BmgBI | CACGTC | 2 cut(s) | 940, 1166 |
| BmgT120I | GGNCC | 6 cut(s) | 528, 847, 3551, 4283, 4691, 5041 |
| BmiI | GGNNCC | 7 cut(s) | 381, 849, 1906, 2443, 3725, 4126, 4920 |
| BmrFI | CCNGG | 5 cut(s) | 430, 1237, 3472, 4175, 4837 |
| BmrI | ACTGGG | 1 cut(s) | 1959 |
| BmuI | ACTGGG | 1 cut(s) | 1959 |
| BpiI | GAAGAC | 6 cut(s) | 91, 219, 262, 528, 1132, 4176 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 463, 495 |
| BpmI | CTGGAG | 1 cut(s) | 4182 |
| Bpu10I | CCTNAGC | 1 cut(s) | 5093 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 5007 |
| Bpu14I | TTCGAA | 2 cut(s) | 2113, 3524 |
| BpuEI | CTTGAG | 4 cut(s) | 277, 3343, 4877, 5140 |
| BpuMI | CCSGG | 1 cut(s) | 3472 |
| BsaAI | YACGTR | 1 cut(s) | 2081 |
| BsaHI | GRCGYC | 1 cut(s) | 3724 |
| BsaI | GGTCTC | 3 cut(s) | 173, 4593, 5198 |
| BsaJI | CCNNGG | 3 cut(s) | 1183, 1236, 2924 |
| BsaWI | WCCGGW | 3 cut(s) | 525, 1832, 4361 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 201, 213, 231, 243, 4053, 4083, 4336, 4366 |
| Bse118I | RCCGGY | 1 cut(s) | 525 |
| BseAI | TCCGGA | 1 cut(s) | 4361 |
| BseBI | CCWGG | 4 cut(s) | 430, 1237, 4175, 4837 |
| BseDI | CCNNGG | 3 cut(s) | 1183, 1236, 2924 |
| BseMII | CTCAG | 2 cut(s) | 95, 5021 |
| BseRI | GAGGAG | 3 cut(s) | 221, 222, 4782 |
| BseX3I | CGGCCG | 1 cut(s) | 3936 |
| BseYI | CCCAGC | 3 cut(s) | 994, 2501, 4149 |
| BsgI | GTGCAG | 4 cut(s) | 1188, 3369, 5010, 5181 |
| Bsh1236I | CGCG | 3 cut(s) | 127, 3270, 4214 |
| Bsh1285I | CGRYCG | 2 cut(s) | 3939, 4510 |
| BshFI | GGCC | 9 cut(s) | 804, 1188, 1466, 1665, 3552, 3938, 4391, 4535, 5042 |
| BshNI | GGYRCC | 3 cut(s) | 3723, 4124, 4918 |
| BshTI | ACCGGT | 1 cut(s) | 525 |
| BsiEI | CGRYCG | 2 cut(s) | 3939, 4510 |
| BsiHKAI | GWGCWC | 2 cut(s) | 231, 4311 |
| BsiHKCI | CYCGRG | 2 cut(s) | 573, 3491 |
| BsiSI | CCGG | 5 cut(s) | 526, 1569, 1833, 3471, 4362 |
| BslFI | GGGAC | 4 cut(s) | 575, 715, 4338, 4451 |
| BsmAI | GTCTC | 8 cut(s) | 173, 183, 817, 1481, 1989, 2526, 4593, 5198 |
| BsmFI | GGGAC | 4 cut(s) | 575, 715, 4338, 4451 |
| BsmI | GAATGC | 4 cut(s) | 335, 1118, 1696, 4579 |
| BsnI | GGCC | 9 cut(s) | 804, 1188, 1466, 1665, 3552, 3938, 4391, 4535, 5042 |
| Bso31I | GGTCTC | 3 cut(s) | 173, 4593, 5198 |
| BsoBI | CYCGRG | 2 cut(s) | 573, 3491 |
| Bsp119I | TTCGAA | 2 cut(s) | 2113, 3524 |
| Bsp1286I | GDGCHC | 3 cut(s) | 231, 4311, 4558 |
| Bsp13I | TCCGGA | 1 cut(s) | 4361 |
| Bsp1407I | TGTACA | 1 cut(s) | 3484 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 5007 |
| Bsp19I | CCATGG | 1 cut(s) | 2924 |
| BspANI | GGCC | 9 cut(s) | 804, 1188, 1466, 1665, 3552, 3938, 4391, 4535, 5042 |
| BspCNI | CTCAG | 2 cut(s) | 96, 5020 |
| BspEI | TCCGGA | 1 cut(s) | 4361 |
| BspFNI | CGCG | 3 cut(s) | 127, 3270, 4214 |
| BspHI | TCATGA | 1 cut(s) | 1045 |
| BspLI | GGNNCC | 7 cut(s) | 381, 849, 1906, 2443, 3725, 4126, 4920 |
| BspMAI | CTGCAG | 1 cut(s) | 3307 |
| BspMI | ACCTGC | 3 cut(s) | 3952, 4328, 4930 |
| BspQI | GCTCTTC | 2 cut(s) | 2382, 4884 |
| BspT104I | TTCGAA | 2 cut(s) | 2113, 3524 |
| BspT107I | GGYRCC | 3 cut(s) | 3723, 4124, 4918 |
| BspTI | CTTAAG | 2 cut(s) | 1760, 2059 |
| BspTNI | GGTCTC | 3 cut(s) | 173, 4593, 5198 |
| BsrBI | CCGCTC | 1 cut(s) | 2757 |
| BsrFI | RCCGGY | 1 cut(s) | 525 |
| BsrGI | TGTACA | 1 cut(s) | 3484 |
| BssAI | RCCGGY | 1 cut(s) | 525 |
| BssECI | CCNNGG | 3 cut(s) | 1183, 1236, 2924 |
| BssNAI | GTATAC | 2 cut(s) | 153, 1063 |
| BssNI | GRCGYC | 1 cut(s) | 3724 |
| BssSI | CACGAG | 1 cut(s) | 2622 |
| BssT1I | CCWWGG | 2 cut(s) | 1183, 2924 |
| Bst1107I | GTATAC | 2 cut(s) | 153, 1063 |
| Bst2BI | CACGAG | 1 cut(s) | 2622 |
| Bst2UI | CCWGG | 4 cut(s) | 430, 1237, 4175, 4837 |
| Bst4CI | ACNGT | 7 cut(s) | 653, 4124, 4465, 4604, 4831, 5002, 5198 |
| Bst6I | CTCTTC | 5 cut(s) | 199, 1015, 2323, 2382, 4884 |
| BstACI | GRCGYC | 1 cut(s) | 3724 |
| BstAFI | CTTAAG | 2 cut(s) | 1760, 2059 |
| BstAUI | TGTACA | 1 cut(s) | 3484 |
| BstBAI | YACGTR | 1 cut(s) | 2081 |
| BstBI | TTCGAA | 2 cut(s) | 2113, 3524 |
| BstC8I | GCNNGC | 8 cut(s) | 1112, 1116, 1417, 1667, 3962, 4129, 4275, 5225 |
| BstDSI | CCRYGG | 1 cut(s) | 2924 |
| BstEII | GGTNACC | 1 cut(s) | 4459 |
| BstFNI | CGCG | 3 cut(s) | 127, 3270, 4214 |
| BstH2I | RGCGCY | 1 cut(s) | 3727 |
| BstHHI | GCGC | 3 cut(s) | 867, 3726, 4852 |
| BstMAI | GTCTC | 8 cut(s) | 173, 183, 817, 1481, 1989, 2526, 4593, 5198 |
| BstMCI | CGRYCG | 2 cut(s) | 3939, 4510 |
| BstNI | CCWGG | 4 cut(s) | 430, 1237, 4175, 4837 |
| BstNSI | RCATGY | 6 cut(s) | 392, 1118, 2935, 3567, 3964, 4135 |
| BstPI | GGTNACC | 1 cut(s) | 4459 |
| BstSCI | CCNGG | 5 cut(s) | 428, 1235, 3470, 4173, 4835 |
| BstSFI | CTRYAG | 2 cut(s) | 634, 3303 |
| BstUI | CGCG | 3 cut(s) | 127, 3270, 4214 |
| BstV2I | GAAGAC | 6 cut(s) | 91, 219, 262, 528, 1132, 4176 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3956 |
| BstZ17I | GTATAC | 2 cut(s) | 153, 1063 |
| BstZI | CGGCCG | 1 cut(s) | 3936 |
| BsuI | GTATCC | 3 cut(s) | 115, 1340, 4843 |
| BsuRI | GGCC | 9 cut(s) | 804, 1188, 1466, 1665, 3552, 3938, 4391, 4535, 5042 |
| BtgI | CCRYGG | 1 cut(s) | 2924 |
| BtrI | CACGTC | 2 cut(s) | 940, 1166 |
| BtsI | GCAGTG | 3 cut(s) | 874, 2839, 3052 |
| BtsIMutI | CAGTG | 9 cut(s) | 15, 874, 1972, 2839, 3052, 3842, 4920, 5085, 5203 |
| BveI | ACCTGC | 3 cut(s) | 3952, 4328, 4930 |
| Cac8I | GCNNGC | 8 cut(s) | 1112, 1116, 1417, 1667, 3962, 4129, 4275, 5225 |
| CciI | TCATGA | 1 cut(s) | 1045 |
| CfoI | GCGC | 3 cut(s) | 867, 3726, 4852 |
| Cfr10I | RCCGGY | 1 cut(s) | 525 |
| Cfr13I | GGNCC | 6 cut(s) | 528, 847, 3551, 4283, 4691, 5041 |
| CpoI | CGGWCCG | 1 cut(s) | 528 |
| CseI | GACGC | 2 cut(s) | 428, 450 |
| Csp6I | GTAC | 8 cut(s) | 392, 1172, 1406, 2082, 3485, 3561, 4605, 4919 |
| CspAI | ACCGGT | 1 cut(s) | 525 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3859, 3894 |
| CspI | CGGWCCG | 1 cut(s) | 528 |
| CviQI | GTAC | 8 cut(s) | 392, 1172, 1406, 2082, 3485, 3561, 4605, 4919 |
| DinI | GGCGCC | 1 cut(s) | 3725 |
| DraI | TTTAAA | 4 cut(s) | 660, 843, 1341, 1375 |
| DraIII | CACNNNGTG | 2 cut(s) | 1166, 4304 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 4646 |
| DriI | GACNNNNNGTC | 1 cut(s) | 644 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 4646 |
| EaeI | YGGCCR | 2 cut(s) | 3936, 4389 |
| EagI | CGGCCG | 1 cut(s) | 3936 |
| Eam1104I | CTCTTC | 5 cut(s) | 199, 1015, 2323, 2382, 4884 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 644 |
| EarI | CTCTTC | 5 cut(s) | 199, 1015, 2323, 2382, 4884 |
| EciI | GGCGGA | 1 cut(s) | 559 |
| Ecl136II | GAGCTC | 1 cut(s) | 229 |
| EclXI | CGGCCG | 1 cut(s) | 3936 |
| Eco130I | CCWWGG | 2 cut(s) | 1183, 2924 |
| Eco147I | AGGCCT | 3 cut(s) | 804, 1188, 1466 |
| Eco24I | GRGCYC | 2 cut(s) | 231, 4558 |
| Eco31I | GGTCTC | 3 cut(s) | 173, 4593, 5198 |
| Eco32I | GATATC | 1 cut(s) | 1360 |
| Eco47I | GGWCC | 4 cut(s) | 528, 847, 4283, 4691 |
| Eco52I | CGGCCG | 1 cut(s) | 3936 |
| Eco53kI | GAGCTC | 1 cut(s) | 229 |
| Eco57I | CTGAAG | 4 cut(s) | 39, 169, 4865, 4896 |
| Eco88I | CYCGRG | 2 cut(s) | 573, 3491 |
| Eco91I | GGTNACC | 1 cut(s) | 4459 |
| EcoICRI | GAGCTC | 1 cut(s) | 229 |
| EcoO109I | RGGNCCY | 1 cut(s) | 847 |
| EcoO65I | GGTNACC | 1 cut(s) | 4459 |
| EcoRI | GAATTC | 4 cut(s) | 1005, 2803, 3016, 3991 |
| EcoRII | CCWGG | 4 cut(s) | 428, 1235, 4173, 4835 |
| EcoRV | GATATC | 1 cut(s) | 1360 |
| EcoT14I | CCWWGG | 2 cut(s) | 1183, 2924 |
| EcoT22I | ATGCAT | 2 cut(s) | 1120, 1518 |
| EcoT38I | GRGCYC | 2 cut(s) | 231, 4558 |
| EgeI | GGCGCC | 1 cut(s) | 3725 |
| EheI | GGCGCC | 1 cut(s) | 3725 |
| ErhI | CCWWGG | 2 cut(s) | 1183, 2924 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 810, 842 |
| FaqI | GGGAC | 4 cut(s) | 575, 715, 4338, 4451 |
| FauNDI | CATATG | 3 cut(s) | 592, 695, 3759 |
| FbaI | TGATCA | 1 cut(s) | 70 |
| FblI | GTMKAC | 6 cut(s) | 152, 439, 637, 1062, 1389, 2920 |
| FriOI | GRGCYC | 2 cut(s) | 231, 4558 |
| FspI | TGCGCA | 1 cut(s) | 866 |
| GlaI | GCGC | 3 cut(s) | 866, 3725, 4851 |
| GsaI | CCCAGC | 3 cut(s) | 998, 2505, 4153 |
| GsuI | CTGGAG | 1 cut(s) | 4182 |
| HaeII | RGCGCY | 1 cut(s) | 3727 |
| HaeIII | GGCC | 9 cut(s) | 804, 1188, 1466, 1665, 3552, 3938, 4391, 4535, 5042 |
| HapII | CCGG | 5 cut(s) | 526, 1569, 1833, 3471, 4362 |
| HgaI | GACGC | 2 cut(s) | 428, 450 |
| HhaI | GCGC | 3 cut(s) | 867, 3726, 4852 |
| Hin1I | GRCGYC | 1 cut(s) | 3724 |
| Hin6I | GCGC | 3 cut(s) | 865, 3724, 4850 |
| HinP1I | GCGC | 3 cut(s) | 865, 3724, 4850 |
| HincII | GTYRAC | 8 cut(s) | 319, 440, 649, 1606, 3403, 4120, 4810, 5117 |
| HindII | GTYRAC | 8 cut(s) | 319, 440, 649, 1606, 3403, 4120, 4810, 5117 |
| HindIII | AAGCTT | 6 cut(s) | 197, 1413, 1699, 1916, 2453, 4908 |
| HpaI | GTTAAC | 1 cut(s) | 4810 |
| HpaII | CCGG | 5 cut(s) | 526, 1569, 1833, 3471, 4362 |
| HphI | GGTGA | 8 cut(s) | 65, 428, 1574, 1822, 2359, 3878, 4290, 5213 |
| Hpy99I | CGWCG | 3 cut(s) | 444, 1167, 3287 |
| HpyCH4III | ACNGT | 7 cut(s) | 653, 4124, 4465, 4604, 4831, 5002, 5198 |
| HpyCH4IV | ACGT | 8 cut(s) | 216, 939, 1030, 1165, 2080, 2140, 3643, 5119 |
| HpySE526I | ACGT | 8 cut(s) | 216, 939, 1030, 1165, 2080, 2140, 3643, 5119 |
| Hsp92I | GRCGYC | 1 cut(s) | 3724 |
| HspAI | GCGC | 3 cut(s) | 865, 3724, 4850 |
| KasI | GGCGCC | 1 cut(s) | 3723 |
| Kpn2I | TCCGGA | 1 cut(s) | 4361 |
| KpnI | GGTACC | 1 cut(s) | 4922 |
| Ksp22I | TGATCA | 1 cut(s) | 70 |
| KspAI | GTTAAC | 1 cut(s) | 4810 |
| LguI | GCTCTTC | 2 cut(s) | 2382, 4884 |
| LmnI | GCTCC | 5 cut(s) | 234, 1578, 2928, 3270, 3863 |
| MaeII | ACGT | 8 cut(s) | 216, 939, 1030, 1165, 2080, 2140, 3643, 5119 |
| MbiI | CCGCTC | 1 cut(s) | 2757 |
| MfeI | CAATTG | 4 cut(s) | 618, 726, 3072, 4793 |
| MhlI | GDGCHC | 3 cut(s) | 231, 4311, 4558 |
| MlsI | TGGCCA | 1 cut(s) | 4391 |
| MluI | ACGCGT | 1 cut(s) | 125 |
| MluNI | TGGCCA | 1 cut(s) | 4391 |
| Mly113I | GGCGCC | 1 cut(s) | 3724 |
| MlyI | GAGTC | 7 cut(s) | 257, 638, 891, 2206, 3328, 5030, 5077 |
| MmeI | TCCRAC | 8 cut(s) | 1480, 1882, 2629, 2868, 3233, 3770, 4490, 4669 |
| Mox20I | TGGCCA | 1 cut(s) | 4391 |
| Mph1103I | ATGCAT | 2 cut(s) | 1120, 1518 |
| MroI | TCCGGA | 1 cut(s) | 4361 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3971 |
| MscI | TGGCCA | 1 cut(s) | 4391 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2213, 3234, 3954 |
| Msp20I | TGGCCA | 1 cut(s) | 4391 |
| MspA1I | CMGCKG | 1 cut(s) | 5141 |
| MspCI | CTTAAG | 2 cut(s) | 1760, 2059 |
| MspI | CCGG | 5 cut(s) | 526, 1569, 1833, 3471, 4362 |
| MspR9I | CCNGG | 5 cut(s) | 430, 1237, 3472, 4175, 4837 |
| MunI | CAATTG | 4 cut(s) | 618, 726, 3072, 4793 |
| Mva1269I | GAATGC | 4 cut(s) | 335, 1118, 1696, 4579 |
| MvaI | CCWGG | 4 cut(s) | 430, 1237, 4175, 4837 |
| MvnI | CGCG | 3 cut(s) | 127, 3270, 4214 |
| NarI | GGCGCC | 1 cut(s) | 3724 |
| NciI | CCSGG | 1 cut(s) | 3472 |
| NcoI | CCATGG | 1 cut(s) | 2924 |
| NdeI | CATATG | 3 cut(s) | 592, 695, 3759 |
| NlaIV | GGNNCC | 7 cut(s) | 381, 849, 1906, 2443, 3725, 4126, 4920 |
| NmeAIII | GCCGAG | 3 cut(s) | 3369, 3741, 4090 |
| NmuCI | GTSAC | 8 cut(s) | 416, 1921, 2215, 2458, 2773, 3236, 3362, 5080 |
| NsbI | TGCGCA | 1 cut(s) | 866 |
| NsiI | ATGCAT | 2 cut(s) | 1120, 1518 |
| NspI | RCATGY | 6 cut(s) | 392, 1118, 2935, 3567, 3964, 4135 |
| NspV | TTCGAA | 2 cut(s) | 2113, 3524 |
| PaeI | GCATGC | 2 cut(s) | 1118, 3964 |
| PagI | TCATGA | 1 cut(s) | 1045 |
| PaqCI | CACCTGC | 1 cut(s) | 4328 |
| PceI | AGGCCT | 3 cut(s) | 804, 1188, 1466 |
| PciI | ACATGT | 2 cut(s) | 388, 3563 |
| PciSI | GCTCTTC | 2 cut(s) | 2382, 4884 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3396 |
| PctI | GAATGC | 4 cut(s) | 335, 1118, 1696, 4579 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3971 |
| PfoI | TCCNGGA | 1 cut(s) | 4835 |
| PinAI | ACCGGT | 1 cut(s) | 525 |
| PleI | GAGTC | 7 cut(s) | 256, 637, 890, 2205, 3327, 5029, 5077 |
| PluTI | GGCGCC | 1 cut(s) | 3727 |
| PpsI | GAGTC | 7 cut(s) | 256, 637, 890, 2205, 3327, 5029, 5077 |
| Ppu21I | YACGTR | 1 cut(s) | 2081 |
| PpuMI | RGGWCCY | 1 cut(s) | 847 |
| PscI | ACATGT | 2 cut(s) | 388, 3563 |
| PshBI | ATTAAT | 2 cut(s) | 3341, 4982 |
| PsiI | TTATAA | 1 cut(s) | 893 |
| Psp124BI | GAGCTC | 1 cut(s) | 231 |
| Psp1406I | AACGTT | 1 cut(s) | 1030 |
| Psp5II | RGGWCCY | 1 cut(s) | 847 |
| Psp6I | CCWGG | 4 cut(s) | 428, 1235, 4173, 4835 |
| PspEI | GGTNACC | 1 cut(s) | 4459 |
| PspFI | CCCAGC | 3 cut(s) | 994, 2501, 4149 |
| PspGI | CCWGG | 4 cut(s) | 428, 1235, 4173, 4835 |
| PspN4I | GGNNCC | 7 cut(s) | 381, 849, 1906, 2443, 3725, 4126, 4920 |
| PspPI | GGNCC | 6 cut(s) | 528, 847, 3551, 4283, 4691, 5041 |
| PspPPI | RGGWCCY | 1 cut(s) | 847 |
| PstI | CTGCAG | 1 cut(s) | 3307 |
| PvuII | CAGCTG | 1 cut(s) | 5141 |
| RsaI | GTAC | 8 cut(s) | 393, 1173, 1407, 2083, 3486, 3562, 4606, 4920 |
| RsaNI | GTAC | 8 cut(s) | 392, 1172, 1406, 2082, 3485, 3561, 4605, 4919 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2213, 3234, 3954 |
| Rsr2I | CGGWCCG | 1 cut(s) | 528 |
| RsrII | CGGWCCG | 1 cut(s) | 528 |
| SacI | GAGCTC | 1 cut(s) | 231 |
| SalI | GTCGAC | 1 cut(s) | 438 |
| SapI | GCTCTTC | 2 cut(s) | 2382, 4884 |
| Sau96I | GGNCC | 6 cut(s) | 528, 847, 3551, 4283, 4691, 5041 |
| ScaI | AGTACT | 1 cut(s) | 1407 |
| SchI | GAGTC | 7 cut(s) | 257, 638, 891, 2206, 3328, 5030, 5077 |
| ScrFI | CCNGG | 5 cut(s) | 430, 1237, 3472, 4175, 4837 |
| SduI | GDGCHC | 3 cut(s) | 231, 4311, 4558 |
| SfcI | CTRYAG | 2 cut(s) | 634, 3303 |
| SfoI | GGCGCC | 1 cut(s) | 3725 |
| SfuI | TTCGAA | 2 cut(s) | 2113, 3524 |
| SinI | GGWCC | 4 cut(s) | 528, 847, 4283, 4691 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2213, 3234, 3954 |
| SmlI | CTYRAG | 6 cut(s) | 292, 1760, 2059, 3358, 4892, 5155 |
| SmoI | CTYRAG | 6 cut(s) | 292, 1760, 2059, 3358, 4892, 5155 |
| SpeI | ACTAGT | 1 cut(s) | 3250 |
| SphI | GCATGC | 2 cut(s) | 1118, 3964 |
| SseBI | AGGCCT | 3 cut(s) | 804, 1188, 1466 |
| SspDI | GGCGCC | 1 cut(s) | 3723 |
| SspI | AATATT | 3 cut(s) | 676, 3339, 3914 |
| SstI | GAGCTC | 1 cut(s) | 231 |
| StuI | AGGCCT | 3 cut(s) | 804, 1188, 1466 |
| StyD4I | CCNGG | 5 cut(s) | 428, 1235, 3470, 4173, 4835 |
| StyI | CCWWGG | 2 cut(s) | 1183, 2924 |
| TaaI | ACNGT | 7 cut(s) | 653, 4124, 4465, 4604, 4831, 5002, 5198 |
| TaiI | ACGT | 8 cut(s) | 219, 942, 1033, 1168, 2083, 2143, 3646, 5122 |
| TaqII | GACCGA | 1 cut(s) | 4496 |
| TatI | WGTACW | 4 cut(s) | 1171, 1405, 3484, 3560 |
| TauI | GCSGC | 3 cut(s) | 3144, 3938, 4502 |
| TscAI | CASTG | 9 cut(s) | 22, 874, 1972, 2839, 3052, 3842, 4920, 5085, 5203 |
| TseFI | GTSAC | 8 cut(s) | 416, 1921, 2215, 2458, 2773, 3236, 3362, 5080 |
| Tsp45I | GTSAC | 8 cut(s) | 416, 1921, 2215, 2458, 2773, 3236, 3362, 5080 |
| TspGWI | ACGGA | 8 cut(s) | 155, 523, 1888, 2631, 3300, 3850, 4276, 4739 |
| TspRI | CASTG | 9 cut(s) | 22, 874, 1972, 2839, 3052, 3842, 4920, 5085, 5203 |
| Vha464I | CTTAAG | 2 cut(s) | 1760, 2059 |
| VpaK11BI | GGWCC | 4 cut(s) | 528, 847, 4283, 4691 |
| VspI | ATTAAT | 2 cut(s) | 3341, 4982 |
| XbaI | TCTAGA | 5 cut(s) | 341, 2737, 2950, 3106, 3163 |
| XceI | RCATGY | 6 cut(s) | 392, 1118, 2935, 3567, 3964, 4135 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 4157 |
| XmiI | GTMKAC | 6 cut(s) | 152, 439, 637, 1062, 1389, 2920 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3971 |
| ZrmI | AGTACT | 1 cut(s) | 1407 |
| Zsp2I | ATGCAT | 2 cut(s) | 1120, 1518 |