Rw4G014090

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000003
Physical Location & Seq
Forward (+)
32878436 .. 32883478
5043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G014090.1

Sequence Viewer

Length: 4086 bp
ATGGTGATCGTTCAAGAAGCCTCTTCTTCTTCTTCTTCTTACTCCAACCATCCATGGAAATACCATGTCTTTTTGAGTTTTAGAGGTGAGGATACACGCAATAATTTCACAGGCCATTTGTGCGACGCTTTGCGTCAGAATGGAATCAACACCTTCATGGATGATCAGCTCAGACGAGGAGAAGAAATATCAACAGCACTTCTCCAAGCAATTGAACAGTCGAGGATTTCAATCATTGTGTTCTCTAAAAACTATGCATCCTCCAAGTGGTGCTTGGATGAACTTGTCAAGATCCTCGAGTGCAAGAAATCAAACCAACAATTGGTTCGACCAATTTTCTACAAAGTTGATCCCTCGGATATACGAAATCACAGAGGTAGCTTTGGGGAGGCACTTGCTAATCATGAATGCAAATTCAAAGATAACTTGGACAAGGTTCAGAAATGGAAGAGTGCTCTCTCAGAAGCAGCACATTCGTCAGGGTGGCCTCTTTTCGATGAGCATTGCTCTGAATCCAGTGTAATTCATGAAATTGTTAAAGAGATTTCAGAGCAAGTTATAAACAGTACATATATGGATGTGGCCAAGTACCCAGTAGGAATAAAACCTCGGGTGCAAGAGATCCATAAGCTTTTAGGCGTTGAGGGAAGAGACGTTCATATGGTAGGGATATGGGGGGCTGGTGGAATAGGTAAGACAACAATTGCCAGAGCTGTCTATAACTCAATTGCTCATAAATTTGATGGGAGTTGTTTCTTAGAAAATGTTAGGGCAGATTCAATGGGTGCCAGAGGCTTTGTCAAACTACAAAAGTCACTTCTTTGTGAGATTCTGAAGGGAAAAAATTTGAAGGTGGCCAATGTAGCTAGAGGAATCACTATGATCAAGGAAATGTTGCAATACAAAAGTGTTCTCTTAGTGCTTGATGATGTGAATGATATTGATCAGTTAAACAACTTGGCTGGTGAATGTAGTTGGTTTGGTATGGGTAGTAGAATCATCATAACAACAAGGGATAAACAATTGCTGACAGGTCATAGTGTTAGTTTAATATACAAGGTCAAAGAATTAGCTTATCATGAAGCTCTCGAGCTTTTTTGTCTAAATGCCTTTAAAAGAAACAAACCTTTTGATGGTTTTGCGGAACTTACAAAACGTGCTATACACTATGCTCAAGGCCTTCCATTAGCTTTGATTGTCCTAGGATCTTCTCTATGTGGTGGAAATGTAGACAAATGGCAAGCTGCATTAGATGGTTTCAAAAGCCCAAAAATTAGAGAAGTTCTCAAAATAAGTTACGATGGATTGGATGACACAGTGAAAGAAGCTTTTCTTGACATTGCGTGTTTCTTCAAAGGTGAATATACAGACCATGTAATACAAACATTAGAAGCTTGTCGCTGCAAACCTGCTAAGTATGGTATCAACGTGCTCATAGACAAGGCCCTCATCAATACATCTATGGGTCACATTTGGATGCATGACTTGCTAGAAGAATTGGGTAGAGATATAGTTCACAAAGAGTCGCCCAATGACCCTGGAAAGCGTAGTAGGCTGTGGTCTCATGAAGATGTTTACCATGTTCTAACAGAGAATACTGGAACAACCAATGTTATAGGCATCAAGGTGGAGCTGCCCAAAGATTCAGATGTGATATGTTTAAGTGGGACCACTTTCTCCAACATGCGAAATCTTAGACTTTTCATATACCGTGCTGGATGTTATTCTGGCGTTGTTGATAGTCTGCCAAATAGCTTGAGGGTAGTTGATTGGCCTAAATATCCCTTACAATTTTTGCCATCCAATTTAATTCCAAGAGAACTTACTCTAATCAATATGCCTAGCAGTCGCATCACAGTTTTGGGAGATAGATACAAGCATCTGATAAATCTGACATCAATAAATCTAAGTGGTTGTCAGTACCTAACGAAAGTGGCAGACTTATCGGGAAGCCCACACTTACAACGTTTGAATCTAAATTTCTGTAAAAGTTTAGTTGAAGTGCATCCTTCCGTTGGATTCCTCGATAAACTTGAGTATTTGAGTCTACTCTCCTGCTCTAGGCTTGAGACTTTTCCCATGGAAGTTAGTTGGAAATCCATGAGGACACTTCTGCTCACCTTGTGTGGAAGGCTTGATAATTTCATAAAAATTGTGCACAAGATGGAGTCCATTAAAACATTGGATCTAACGAAAAGTGGCATAAAAGAACTGCAGTCATGGATTGGATGTTGCATTTCCTTGGAAGTTTTGATGTTGACTAGAACTTCAATCAAACAACTGCCCTTAAAGATTGAAAATCTTACTTCTTTAAGAGAACTGTACCTGTTGGGAACTCCCCTTAAGGAATTGCCTTCATCGATTGGGTATCTCACTTCTTTAAGAGAATTGAAGCTGTCTAAGACTCGCATCAAAGAATTGCCTCTATCAATTGGGGATCTCACGTCCTTGGAGGAATTGAACGTTTCTAAAACTTCCATCAGAGAACTGCCTTCTTCAATTGGGAATCTCACGTCCTTGGTGGAATTGGACGCTTCTGAAACTCTCATCGAAGAATTGCCTTCTTCAATTGGGAATCTCACTTCCTTGTGGAAATTGAACGTGTCTGAAACTCCCATCACAGAACTGCCTCTATCAATTGGGAATCTCACATCCTTGGTGCAATTGAAGCTATCTAAAACTTCCATCAGAGAACTGCCTTCTTCAATTGGGAATCTCACGTCCTTGGTGGAATTGGACGCTTCTGAAACTCTGATTGAAGAATTGCCTCTGTCAATTGGAAATCTCATTCGCCTTGAAGATTTATATCTAAAAGGATGTGCAAACCTTACAAATGTGCCGCACGGTGTTTGCGGAGGGCTGCAGCATCTACGATCTCTAGACCTATCTTGGTGTCCAAAACTGGTGACATTTCCAAGTAGGGGGAGCGCTTTGGTTTCATCAAGTGCAGAATCTGTTCCTTTGATGCTTCCATCTAATTCAAACAATGGGCATGATCATCCTGGTTCATTATTGTTTCCCCAGCTACAGCGTCTTCATTTTGAAGGATGCAAATTATCTGGAAGCAGTTTTGATAATTTGCTAACGAATCTTGACTGTGAGTCCACATTAAAGACACTTGATCTATCTGGAAGCAGTTTTGATAGTCTTCCGGCATGCATCAGCAAATTCAGCTGGTTGAATTATCTTGATTTAAGTGGTTGCAAGAGGCTTCGAGACATTTCAGAACTTCCACCAAATATACGAGTTATAAAGCTGGATGATTGCGTATCGTTGGAAAGATTTTCAAAATTGTCAAATATACTGGAGCAGAAAGACACTCCGGGAGTTCTTCGGAGTATGCACTTGTCTAATTGCAATAGACTGATGGATAATCTTGGCATGGACGTGGTGTCGAAGATGGCAAAAGCATTACCGTATCAGCTGGTGCATGCCGGCTTACATCAGCATCTGCAGTGCTGGAATCTTGTTCTTCCAAGCCTCCAGGAAATTGAAGTTCCAAATTGGTTTTATGGGGGTGAGGTGGACACAAGTGTGCTTCCTGGTCATGAAACTCATGGTACATGTGAAGTTTTGATAAAAATCCCCAGGAATCTGAAGGCTGAGAGAATAGGATTGGTTGTCTGTGTTGTTTTTGAACTTACCCAAGTTTTTTTCGATGATACTGCTCGTTGTTTTGTGGGGGTTGTGATTGATAAAAAGTATTATAACACTAGTGGCAACTACATTGAATTAAAAGCGACAGAGTCATCAGCTCATGATAATGTATTAGTGCATCTGATAACACTAGAGGTGGTGGATCCTGTGGTTCGAGTATGTTTTGAGGGCCATGGATTGCTCCTAAAGAGTTTTGGGGTCCACCTGGTTAATATGAAAGAGGATCATGTAAGTGGTGAAGACCTGGCACGAGAAAGATATAGGCAGAGCAATGCTAGCATTTCTGATCAGGTGGCTTTGCACGCAGAAGGGGCAGCTGTAGCATCATTAGTATCAGATGACAGCAATTATGGGGAAGAACGAGAACGAGAACAGGAACCTCATCTTCCAACAAAAAGATTTGAAGACTGGCAAGACAAAAAAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

1361

Amino Acids

152.11

Weight (kDa)

6.34

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 20 - 189 1.4e-54 TIR domain
TIR_2 PF13676 23 - 118 2.8e-16 TIR domain
NB-ARC PF00931 206 - 374 7.7e-20 NB-ARC domain
WHD_ROQ1 PF23282 441 - 509 2e-15 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 693 - 799 2.5e-08 Leucine-rich repeat region
LRR_14 PF23598 740 - 822 5.1e-12 Leucine-rich repeat region
LRR_14 PF23598 788 - 867 2e-17 Leucine-rich repeat region
LRR_14 PF23598 866 - 964 9.7e-15 Leucine-rich repeat region
LRR_13 PF23286 1007 - 1106 1.8e-07 Disease resistance protein RPS4B-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44900
fragaria_vesca FvH4_1g09110 FvH4_1g09110 FvH4_1g09110 FvH4_1g15650 FvH4_2g06610 FvH4_2g06630 FvH4_2g09350 FvH4_2g09360 FvH4_2g09360 FvH4_2g14031 FvH4_2g14040 FvH4_3g08681 FvH4_3g09290 FvH4_3g09291 FvH4_3g10020 FvH4_3g44042 FvH4_3g44370 FvH4_3g44390 FvH4_3g44391 FvH4_3g44391 FvH4_3g44391 FvH4_3g44391 FvH4_3g44391 FvH4_3g44391 FvH4_3g44391 FvH4_3g44391 FvH4_3g44391 FvH4_3g44391 FvH4_3g44580 FvH4_3g45530 FvH4_3g45531 FvH4_4g00780 FvH4_4g13411 FvH4_4g13412 FvH4_4g13420 FvH4_4g13430 FvH4_4g21900 FvH4_4g21910 FvH4_5g03630 FvH4_5g03630 FvH4_5g03630 FvH4_5g03630 FvH4_5g03630 FvH4_5g03630 FvH4_5g03630 FvH4_5g03630 FvH4_5g03630 FvH4_5g03640 FvH4_5g07190 FvH4_5g07310 FvH4_5g07310 FvH4_5g21060 FvH4_5g33441 FvH4_5g38870 FvH4_5g38870 FvH4_5g39151 FvH4_5g39151 FvH4_5g39151 FvH4_5g39151 FvH4_5g39151 FvH4_5g39151 FvH4_5g39151 FvH4_5g39160 FvH4_7g04050
malus_domestica MD00G1028200.v1.1 MD00G1158300.v1.1 MD00G1158500.v1.1 MD00G1158700.v1.1 MD01G1191000.v1.1 MD02G1031900.v1.1 MD02G1097400.v1.1 MD02G1098100.v1.1 MD02G1098200.v1.1 MD02G1099000.v1.1 MD02G1100800.v1.1 MD02G1100900.v1.1 MD02G1101700.v1.1 MD02G1101800.v1.1 MD02G1106700.v1.1 MD02G1106800.v1.1 MD02G1109200.v1.1 MD02G1109700.v1.1 MD02G1111800.v1.1 MD02G1111900.v1.1 MD02G1112400.v1.1 MD02G1112800.v1.1 MD02G1115200.v1.1 MD02G1115300.v1.1 MD02G1115400.v1.1 MD02G1116100.v1.1 MD02G1116200.v1.1 MD02G1116300.v1.1 MD04G1015000.v1.1 MD04G1015300.v1.1 MD05G1315600.v1.1 MD05G1317200.v1.1 MD07G1244700.v1.1 MD07G1261600.v1.1 MD10G1072300.v1.1 MD10G1072400.v1.1 MD15G1432400.v1.1 MD15G1432500.v1.1 MD15G1432700.v1.1
prunus_persica Prupe.1G018700_v2.0.a1 Prupe.1G161300_v2.0.a1 Prupe.1G161400_v2.0.a1 Prupe.1G161600_v2.0.a1 Prupe.1G161700_v2.0.a1 Prupe.1G161800_v2.0.a1 Prupe.1G162100_v2.0.a1 Prupe.1G162200_v2.0.a1 Prupe.1G162500_v2.0.a1 Prupe.1G162500_v2.0.a1 Prupe.2G018300_v2.0.a1 Prupe.2G045200_v2.0.a1 Prupe.2G045200_v2.0.a1 Prupe.2G045200_v2.0.a1 Prupe.2G055200_v2.0.a1 Prupe.2G055200_v2.0.a1 Prupe.2G055200_v2.0.a1 Prupe.2G055500_v2.0.a1 Prupe.2G055600_v2.0.a1 Prupe.2G055700_v2.0.a1 Prupe.2G056100_v2.0.a1 Prupe.2G057100_v2.0.a1 Prupe.2G057100_v2.0.a1 Prupe.2G057100_v2.0.a1 Prupe.2G057600_v2.0.a1 Prupe.2G057600_v2.0.a1 Prupe.2G057600_v2.0.a1 Prupe.2G057600_v2.0.a1 Prupe.2G057600_v2.0.a1 Prupe.2G057800_v2.0.a1 Prupe.2G057800_v2.0.a1 Prupe.2G057800_v2.0.a1 Prupe.2G066600_v2.0.a1 Prupe.2G068000_v2.0.a1 Prupe.2G068100_v2.0.a1 Prupe.2G068300_v2.0.a1 Prupe.2G068400_v2.0.a1 Prupe.2G068900_v2.0.a1 Prupe.2G069000_v2.0.a1 Prupe.2G088600_v2.0.a1 Prupe.5G019000_v2.0.a1 Prupe.5G019000_v2.0.a1 Prupe.5G019000_v2.0.a1 Prupe.5G019000_v2.0.a1 Prupe.5G074600_v2.0.a1 Prupe.5G074700_v2.0.a1 Prupe.5G074700_v2.0.a1 Prupe.5G074700_v2.0.a1 Prupe.5G074700_v2.0.a1 Prupe.8G108500_v2.0.a1 Prupe.8G108700_v2.0.a1 Prupe.8G108800_v2.0.a1 Prupe.8G109000_v2.0.a1 Prupe.8G109200_v2.0.a1 Prupe.8G109400_v2.0.a1 Prupe.8G109500_v2.0.a1 Prupe.8G109600_v2.0.a1 Prupe.8G109900_v2.0.a1 Prupe.8G110600_v2.0.a1 Prupe.8G110600_v2.0.a1 Prupe.8G110800_v2.0.a1 Prupe.8G111100_v2.0.a1 Prupe.8G111200_v2.0.a1 Prupe.8G111500_v2.0.a1 Prupe.8G111900_v2.0.a1 Prupe.8G112100_v2.0.a1 Prupe.8G118000_v2.0.a1 Prupe.8G119800_v2.0.a1 Prupe.8G120300_v2.0.a1 Prupe.8G120400_v2.0.a1 Prupe.8G120600_v2.0.a1
pyrus_communis pycom01g20190 pycom02g07720 pycom02g07910 pycom02g07930 pycom02g07940 pycom02g07950 pycom02g07960 pycom02g07990 pycom02g08300 pycom02g08320 pycom02g08330 pycom02g08820 pycom02g09020 pycom02g09030 pycom02g22460 pycom03g15400 pycom04g01170 pycom04g11000 pycom07g21850 pycom07g21870 pycom07g22050 pycom07g23360 pycom07g23490 pycom07g23510 pycom07g23680 pycom07g23720 pycom07g23750 pycom13g16980 pycom13g16990 pycom13g17000 pycom13g17100 pycom15g38200 pycom17g04760 pycom17g21130 pycom17g21190
rosa_chinensis RchiOBHm_Chr1g0319041 RchiOBHm_Chr1g0319051 RchiOBHm_Chr1g0327891 RchiOBHm_Chr1g0328841 RchiOBHm_Chr1g0329201 RchiOBHm_Chr1g0349191 RchiOBHm_Chr1g0366881 RchiOBHm_Chr1g0375901 RchiOBHm_Chr2g0124281 RchiOBHm_Chr3g0492031 RchiOBHm_Chr4g0386491 RchiOBHm_Chr4g0386561 RchiOBHm_Chr4g0386611 RchiOBHm_Chr4g0386681 RchiOBHm_Chr4g0386731 RchiOBHm_Chr4g0386831 RchiOBHm_Chr4g0386871 RchiOBHm_Chr4g0386951 RchiOBHm_Chr4g0387011 RchiOBHm_Chr4g0387141 RchiOBHm_Chr4g0387151 RchiOBHm_Chr4g0387161 RchiOBHm_Chr4g0387181 RchiOBHm_Chr4g0387191 RchiOBHm_Chr4g0387221 RchiOBHm_Chr4g0387231 RchiOBHm_Chr4g0387281 RchiOBHm_Chr4g0387471 RchiOBHm_Chr4g0387971 RchiOBHm_Chr4g0387981 RchiOBHm_Chr4g0388021 RchiOBHm_Chr4g0388081 RchiOBHm_Chr4g0389001 RchiOBHm_Chr4g0389141 RchiOBHm_Chr4g0389191 RchiOBHm_Chr4g0389291 RchiOBHm_Chr4g0389311 RchiOBHm_Chr4g0389401 RchiOBHm_Chr4g0406351 RchiOBHm_Chr4g0407801 RchiOBHm_Chr4g0411691 RchiOBHm_Chr4g0411751 RchiOBHm_Chr4g0411761 RchiOBHm_Chr4g0411771 RchiOBHm_Chr4g0411821 RchiOBHm_Chr4g0411881 RchiOBHm_Chr4g0411891 RchiOBHm_Chr4g0411901 RchiOBHm_Chr4g0411911 RchiOBHm_Chr4g0411931 RchiOBHm_Chr4g0411941 RchiOBHm_Chr4g0412021 RchiOBHm_Chr4g0413781 RchiOBHm_Chr4g0413831 RchiOBHm_Chr4g0413861 RchiOBHm_Chr4g0413891 RchiOBHm_Chr4g0413941 RchiOBHm_Chr4g0413961 RchiOBHm_Chr4g0413971 RchiOBHm_Chr4g0413991 RchiOBHm_Chr4g0414001 RchiOBHm_Chr5g0028831 RchiOBHm_Chr5g0052921 RchiOBHm_Chr5g0059441 RchiOBHm_Chr5g0059461 RchiOBHm_Chr5g0080811 RchiOBHm_Chr5g0080951 RchiOBHm_Chr6g0258111 RchiOBHm_Chr6g0258551 RchiOBHm_Chr6g0260021 RchiOBHm_Chr6g0260031 RchiOBHm_Chr6g0260111 RchiOBHm_Chr6g0260281 RchiOBHm_Chr6g0260291 RchiOBHm_Chr6g0260631 RchiOBHm_Chr6g0260731 RchiOBHm_Chr6g0260811 RchiOBHm_Chr6g0261091 RchiOBHm_Chr6g0261191 RchiOBHm_Chr6g0261281 RchiOBHm_Chr6g0261351 RchiOBHm_Chr6g0261371 RchiOBHm_Chr6g0261411 RchiOBHm_Chr6g0261421 RchiOBHm_Chr6g0261451 RchiOBHm_Chr6g0261701 RchiOBHm_Chr6g0261741 RchiOBHm_Chr6g0261751 RchiOBHm_Chr6g0261901 RchiOBHm_Chr6g0261971 RchiOBHm_Chr6g0262681 RchiOBHm_Chr6g0262851 RchiOBHm_Chr6g0263641 RchiOBHm_Chr6g0265141 RchiOBHm_Chr6g0265581 RchiOBHm_Chr6g0265601 RchiOBHm_Chr6g0265611 RchiOBHm_Chr6g0265631 RchiOBHm_Chr6g0266751 RchiOBHm_Chr6g0266761 RchiOBHm_Chr6g0267621 RchiOBHm_Chr6g0267681 RchiOBHm_Chr6g0267691 RchiOBHm_Chr6g0267701 RchiOBHm_Chr6g0267711 RchiOBHm_Chr6g0268391 RchiOBHm_Chr6g0275991 RchiOBHm_Chr6g0276021 RchiOBHm_Chr6g0276051 RchiOBHm_Chr6g0276061 RchiOBHm_Chr7g0187411 RchiOBHm_Chr7g0204321 RchiOBHm_Chr7g0216111 RchiOBHm_Chr7g0216121 RchiOBHm_Chr7g0216131 RchiOBHm_Chr7g0217461 RchiOBHm_Chr7g0225191 RchiOBHm_Chr7g0225211 RchiOBHm_Chr7g0225241 RchiOBHm_Chr7g0232811 RchiOBHm_Chr7g0234631 RchiOBHm_Chr7g0241171 RchiOBHm_Chr7g0241191 RchiOBHm_Chr7g0243511
rosa_laevigata RLG00000000583 RLG00000000584 RLG00000000587 RLG00000000588 RLG00000001381 RLG00000001382 RLG00000001406 RLG00000001568 RLG00000001591 RLG00000001651 RLG00000001814 RLG00000001836 RLG00000002468 RLG00000002593 RLG00000002599 RLG00000002830 RLG00000003240 RLG00000003244 RLG00000003252 RLG00000003253 RLG00000004466 RLG00000008180 RLG00000008181 RLG00000008183 RLG00000008186 RLG00000008188 RLG00000008189 RLG00000008191 RLG00000008192 RLG00000008311 RLG00000008328 RLG00000008338 RLG00000008532 RLG00000008659 RLG00000009191 RLG00000009599 RLG00000009986 RLG00000009987 RLG00000009988 RLG00000009991 RLG00000009992 RLG00000009994 RLG00000009997 RLG00000009999 RLG00000010000 RLG00000010083 RLG00000010085 RLG00000010087 RLG00000010121 RLG00000010134 RLG00000010135 RLG00000010139 RLG00000010143 RLG00000010144 RLG00000010147 RLG00000010153 RLG00000010154 RLG00000010160 RLG00000013415 RLG00000013417 RLG00000013418 RLG00000013419 RLG00000013463 RLG00000013978 RLG00000013980 RLG00000013982 RLG00000014033 RLG00000014082 RLG00000014172 RLG00000014174 RLG00000014175 RLG00000014336 RLG00000014353 RLG00000014354 RLG00000014411 RLG00000014412 RLG00000014454 RLG00000014464 RLG00000014465 RLG00000014483 RLG00000014484 RLG00000014487 RLG00000014491 RLG00000014492 RLG00000014493 RLG00000014591 RLG00000014592 RLG00000014593 RLG00000014643 RLG00000014648 RLG00000015075 RLG00000018323 RLG00000018800 RLG00000022850 RLG00000028573 RLG00000029913 RLG00000029914 RLG00000029916 RLG00000029961 RLG00000030502 RLG00000030503 RLG00000033117 RLG00000034359 RLG00000036896 RLG00000036906 RLG00000036907 RLG00000036908 RLG00000037038
rosa_multiflora Rmu_co7988014.1_g000001 Rmu_co8085598.1_g000001 Rmu_co8145922.1_g000001 Rmu_co8234863.1_g000001 Rmu_co8309399.1_g000001 Rmu_co8369267.1_g000001 Rmu_co8377995.1_g000001 Rmu_co8399445.1_g000001 Rmu_co8416151.1_g000001 Rmu_co8430427.1_g000001 Rmu_co8465897.1_g000001 Rmu_co8467485.1_g000001 Rmu_co8475195.1_g000001 Rmu_co8519173.1_g000001 Rmu_sc0000013.1_g000009 Rmu_sc0000013.1_g000013 Rmu_sc0000013.1_g000018 Rmu_sc0000057.1_g000029 Rmu_sc0000057.1_g000030 Rmu_sc0000070.1_g000032 Rmu_sc0000145.1_g000017 Rmu_sc0000217.1_g000005 Rmu_sc0000217.1_g000006 Rmu_sc0000245.1_g000012 Rmu_sc0000245.1_g000040 Rmu_sc0000245.1_g000042 Rmu_sc0000245.1_g000045 Rmu_sc0000245.1_g000046 Rmu_sc0000259.1_g000048 Rmu_sc0000588.1_g000004 Rmu_sc0000588.1_g000021 Rmu_sc0000588.1_g000030 Rmu_sc0000588.1_g000038 Rmu_sc0000588.1_g000051 Rmu_sc0000588.1_g000053 Rmu_sc0000616.1_g000010 Rmu_sc0000623.1_g000007 Rmu_sc0000711.1_g000007 Rmu_sc0000711.1_g000016 Rmu_sc0000711.1_g000019 Rmu_sc0000711.1_g000030 Rmu_sc0000711.1_g000037 Rmu_sc0000711.1_g000050 Rmu_sc0000808.1_g000052 Rmu_sc0000966.1_g000003 Rmu_sc0001019.1_g000001 Rmu_sc0001260.1_g000022 Rmu_sc0001317.1_g000017 Rmu_sc0001395.1_g000002 Rmu_sc0001395.1_g000005 Rmu_sc0001777.1_g000008 Rmu_sc0001833.1_g000002 Rmu_sc0001833.1_g000012 Rmu_sc0001942.1_g000011 Rmu_sc0001942.1_g000024 Rmu_sc0001942.1_g000033 Rmu_sc0001942.1_g000040 Rmu_sc0001942.1_g000048 Rmu_sc0001942.1_g000062 Rmu_sc0001977.1_g000003 Rmu_sc0002180.1_g000041 Rmu_sc0002221.1_g000002 Rmu_sc0002221.1_g000005 Rmu_sc0002322.1_g000014 Rmu_sc0002404.1_g000012 Rmu_sc0002404.1_g000013 Rmu_sc0002426.1_g000015 Rmu_sc0002498.1_g000019 Rmu_sc0002509.1_g000019 Rmu_sc0002557.1_g000004 Rmu_sc0002604.1_g000003 Rmu_sc0002766.1_g000022 Rmu_sc0002863.1_g000021 Rmu_sc0002938.1_g000024 Rmu_sc0002968.1_g000003 Rmu_sc0003140.1_g000012 Rmu_sc0003177.1_g000026 Rmu_sc0003177.1_g000039 Rmu_sc0003233.1_g000020 Rmu_sc0003233.1_g000040 Rmu_sc0003237.1_g000007 Rmu_sc0003238.1_g000021 Rmu_sc0003264.1_g000017 Rmu_sc0003264.1_g000018 Rmu_sc0003264.1_g000020 Rmu_sc0003321.1_g000003 Rmu_sc0003337.1_g000032 Rmu_sc0003337.1_g000035 Rmu_sc0003337.1_g000048 Rmu_sc0003337.1_g000050 Rmu_sc0003413.1_g000001 Rmu_sc0003413.1_g000069 Rmu_sc0003487.1_g000004 Rmu_sc0003541.1_g000001 Rmu_sc0003951.1_g000005 Rmu_sc0003953.1_g000024 Rmu_sc0004082.1_g000001 Rmu_sc0004143.1_g000016 Rmu_sc0004417.1_g000004 Rmu_sc0004417.1_g000009 Rmu_sc0004618.1_g000002 Rmu_sc0004669.1_g000001 Rmu_sc0004860.1_g000005 Rmu_sc0004860.1_g000007 Rmu_sc0004865.1_g000012 Rmu_sc0005178.1_g000009 Rmu_sc0005400.1_g000029 Rmu_sc0005410.1_g000015 Rmu_sc0005816.1_g000038 Rmu_sc0005816.1_g000039 Rmu_sc0005840.1_g000012 Rmu_sc0005873.1_g000016 Rmu_sc0005873.1_g000017 Rmu_sc0005891.1_g000020 Rmu_sc0006274.1_g000007 Rmu_sc0006405.1_g000008 Rmu_sc0006413.1_g000008 Rmu_sc0006415.1_g000010 Rmu_sc0006415.1_g000015 Rmu_sc0006428.1_g000006 Rmu_sc0006428.1_g000012 Rmu_sc0006428.1_g000013 Rmu_sc0006428.1_g000031 Rmu_sc0006536.1_g000005 Rmu_sc0006536.1_g000011 Rmu_sc0006536.1_g000027 Rmu_sc0006536.1_g000037 Rmu_sc0006536.1_g000044 Rmu_sc0006571.1_g000002 Rmu_sc0006571.1_g000015 Rmu_sc0006571.1_g000020 Rmu_sc0006571.1_g000021 Rmu_sc0006586.1_g000009 Rmu_sc0006586.1_g000010 Rmu_sc0006648.1_g000006 Rmu_sc0006648.1_g000011 Rmu_sc0006665.1_g000001 Rmu_sc0007121.1_g000001 Rmu_sc0007121.1_g000005 Rmu_sc0007121.1_g000026 Rmu_sc0007121.1_g000027 Rmu_sc0007121.1_g000033 Rmu_sc0007317.1_g000004 Rmu_sc0007358.1_g000008 Rmu_sc0007384.1_g000005 Rmu_sc0007732.1_g000004 Rmu_sc0007839.1_g000004 Rmu_sc0007949.1_g000001 Rmu_sc0008380.1_g000003 Rmu_sc0008380.1_g000009 Rmu_sc0008743.1_g000001 Rmu_sc0009161.1_g000005 Rmu_sc0009253.1_g000006 Rmu_sc0009253.1_g000007 Rmu_sc0009253.1_g000011 Rmu_sc0009606.1_g000013 Rmu_sc0009907.1_g000009 Rmu_sc0010272.1_g000020 Rmu_sc0010278.1_g000007 Rmu_sc0010693.1_g000009 Rmu_sc0010693.1_g000011 Rmu_sc0010693.1_g000019 Rmu_sc0010815.1_g000001 Rmu_sc0011111.1_g000004 Rmu_sc0011657.1_g000014 Rmu_sc0012140.1_g000024 Rmu_sc0012901.1_g000003 Rmu_sc0013676.1_g000001 Rmu_sc0014162.1_g000008 Rmu_sc0014311.1_g000001 Rmu_sc0014629.1_g000004 Rmu_sc0014629.1_g000009 Rmu_sc0014629.1_g000020 Rmu_sc0014755.1_g000001 Rmu_sc0014755.1_g000002 Rmu_sc0014838.1_g000001 Rmu_sc0014874.1_g000001 Rmu_sc0015156.1_g000003 Rmu_sc0015156.1_g000004 Rmu_sc0015188.1_g000001 Rmu_sc0015236.1_g000006 Rmu_sc0015236.1_g000007 Rmu_sc0015905.1_g000002 Rmu_sc0016605.1_g000001 Rmu_sc0016888.1_g000001 Rmu_sc0017135.1_g000001 Rmu_sc0017135.1_g000002 Rmu_sc0017351.1_g000001 Rmu_sc0018403.1_g000001 Rmu_sc0018403.1_g000003 Rmu_sc0018873.1_g000008 Rmu_sc0018886.1_g000003 Rmu_sc0019653.1_g000001 Rmu_sc0021143.1_g000002 Rmu_sc0031790.1_g000001 Rmu_sc0032108.1_g000001 Rmu_sc0032268.1_g000001 Rmu_sc0035470.1_g000001 Rmu_sc0035547.1_g000001 Rmu_sc0037946.1_g000001 Rmu_ssc0000018.1_g000002 Rmu_ssc0000211.1_g000002 Rmu_ssc0000211.1_g000012 Rmu_ssc0000211.1_g000014 Rmu_ssc0000238.1_g000001 Rmu_ssc0000272.1_g000002 Rmu_ssc0000272.1_g000004 Rmu_ssc0000272.1_g000005 Rmu_ssc0000272.1_g000011 Rmu_ssc0000359.1_g000049 Rmu_ssc0000359.1_g000059 Rmu_ssc0000359.1_g000062 Rmu_ssc0000359.1_g000063 Rmu_ssc0000359.1_g000064 Rmu_ssc0000359.1_g000065 Rmu_ssc0000432.1_g000120
rosa_roxburghii Rroxscaffold_175G00432250 Rroxscaffold_175G00432450 Rroxscaffold_177G00434130 Rroxscaffold_177G00434150 Rroxscaffold_177G00434210 Rroxscaffold_1G00001090 Rroxscaffold_1G00002490 Rroxscaffold_1G00002510 Rroxscaffold_1G00002520 Rroxscaffold_1G00002530 Rroxscaffold_1G00002580 Rroxscaffold_1G00002670 Rroxscaffold_1G00012590 Rroxscaffold_1G00013310 Rroxscaffold_1G00017880 Rroxscaffold_1G00028700 Rroxscaffold_2G00088380 Rroxscaffold_2G00110500 Rroxscaffold_2G00119960 Rroxscaffold_2G00122850 Rroxscaffold_3G00219160 Rroxscaffold_3G00219170 Rroxscaffold_3G00219210 Rroxscaffold_3G00226720 Rroxscaffold_3G00228790 Rroxscaffold_3G00229020 Rroxscaffold_3G00231760 Rroxscaffold_3G00234020 Rroxscaffold_3G00234600 Rroxscaffold_3G00241980 Rroxscaffold_3G00243620 Rroxscaffold_3G00243630 Rroxscaffold_3G00263940 Rroxscaffold_3G00267460 Rroxscaffold_4G00305830 Rroxscaffold_4G00305870 Rroxscaffold_4G00321320 Rroxscaffold_4G00321330 Rroxscaffold_4G00322180 Rroxscaffold_4G00325040 Rroxscaffold_5G00333980 Rroxscaffold_5G00334000 Rroxscaffold_5G00334030 Rroxscaffold_5G00334060 Rroxscaffold_5G00334130 Rroxscaffold_5G00334550 Rroxscaffold_5G00334570 Rroxscaffold_5G00334620 Rroxscaffold_5G00335370 Rroxscaffold_5G00335390 Rroxscaffold_5G00335400 Rroxscaffold_5G00335410 Rroxscaffold_5G00337780 Rroxscaffold_5G00339590 Rroxscaffold_5G00352220 Rroxscaffold_5G00353640 Rroxscaffold_5G00353700 Rroxscaffold_5G00356240 Rroxscaffold_5G00356330 Rroxscaffold_5G00357690 Rroxscaffold_5G00357700 Rroxscaffold_5G00357740 Rroxscaffold_5G00357750 Rroxscaffold_5G00357780 Rroxscaffold_5G00357790 Rroxscaffold_5G00357820 Rroxscaffold_5G00357830 Rroxscaffold_5G00357840 Rroxscaffold_5G00357870 Rroxscaffold_5G00357880 Rroxscaffold_5G00357910 Rroxscaffold_5G00357950 Rroxscaffold_5G00357970 Rroxscaffold_5G00358120 Rroxscaffold_5G00378280 Rroxscaffold_6G00389710 Rroxscaffold_6G00393030 Rroxscaffold_6G00393040 Rroxscaffold_6G00412320 Rroxscaffold_7G00192590 Rroxscaffold_7G00192600 Rroxscaffold_7G00192650 Rroxscaffold_7G00192660 Rroxscaffold_7G00193320 Rroxscaffold_7G00195330 Rroxscaffold_7G00200480 Rroxscaffold_7G00200490 Rroxscaffold_7G00200520 Rroxscaffold_7G00200530 Rroxscaffold_7G00201490 Rroxscaffold_7G00202600 Rroxscaffold_7G00202610 Rroxscaffold_7G00202900 Rroxscaffold_7G00202910 Rroxscaffold_7G00202930 Rroxscaffold_7G00205020 Rroxscaffold_7G00207350 Rroxscaffold_7G00207400 Rroxscaffold_7G00208110
rosa_rugosa Rorug01G0072300 Rorug01G0075900 Rorug01G0202000 Rorug01G0372400 Rorug02G0187000 Rorug02G0209900 Rorug02G0250800 Rorug03G0001700 Rorug03G0001800 Rorug03G0251300 Rorug03G0307300 Rorug03G0307600 Rorug03G0307600 Rorug03G0307600 Rorug03G0307900 Rorug03G0308000 Rorug03G0308100 Rorug03G0308700 Rorug03G0309500 Rorug03G0309600 Rorug03G0314300 Rorug03G0314500 Rorug03G0314500 Rorug03G0322100 Rorug03G0322200.1 Rorug03G0322300 Rorug03G0322600 Rorug03G0322900 Rorug03G0323100 Rorug03G0348000 Rorug03G0364700.1 Rorug03G0364800.1 Rorug04G0016800 Rorug04G0096100 Rorug04G0096200 Rorug04G0096300 Rorug04G0104600 Rorug04G0107000 Rorug04G0107100 Rorug04G0107300 Rorug04G0107400 Rorug04G0123200 Rorug04G0123200 Rorug04G0125100 Rorug05G0110600 Rorug05G0110600 Rorug05G0181000 Rorug05G0269200 Rorug05G0322800 Rorug05G0351200 Rorug05G0472400 Rorug05G0472600 Rorug05G0472800 Rorug05G0473200 Rorug05G0473300 Rorug05G0541000 Rorug05G0578000 Rorug05G0582000 Rorug05G0582700 Rorug05G0582800 Rorug05G0592100 Rorug05G0592400 Rorug05G0592600 Rorug05G0593000 Rorug05G0594800 Rorug06G0000100 Rorug06G0000200 Rorug06G0004800 Rorug06G0013300 Rorug06G0016000 Rorug06G0016100 Rorug06G0017600 Rorug06G0029700 Rorug06G0034000 Rorug06G0034200 Rorug06G0039900.1 Rorug06G0040000 Rorug06G0041000 Rorug06G0075000 Rorug06G0092100 Rorug06G0092200 Rorug06G0098200 Rorug06G0098300 Rorug06G0098300 Rorug06G0481000 Rorug06G0509800 Rorug06G0509900 Rorug07G0169300 Rorug07G0221100 Rorug07G0228000.1 Rorug07G0232200 Rorug07G0232300 Rorug07G0248600 Rorug07G0267600 Rorug07G0269900 Rorug07G0270000 Rorug07G0307300 Rorug07G0343700 Rorug07G0343700 Rorug07G0343800
rosa_samantha Rh1BG070800 Rh1BG075800 Rh1BG076000 Rh1CG086300 Rh1CG092300 Rh1DG092700 Rh1DG098500 Rh1DG166700 Rh3DG360100 Rh4AG011700 Rh4AG012300 Rh4AG012400 Rh4AG012800 Rh4AG015200 Rh4AG027000 Rh4AG027500 Rh4AG052800 Rh4AG170100 Rh4AG170400 Rh4AG182700 Rh4AG183000 Rh4AG183400 Rh4AG202800 Rh4BG009600 Rh4BG167100 Rh4BG168000 Rh4BG168300 Rh4BG168600 Rh4BG169600 Rh4BG182100 Rh4BG183200 Rh4CG167700 Rh4CG181300 Rh4CG181400 Rh4CG194100 Rh4CG194400 Rh4CG195000 Rh4CG195300 Rh4CG195400 Rh4DG007500 Rh4DG010500 Rh4DG014700 Rh4DG021000 Rh4DG200100 Rh5BG549600 Rh5CG572300 Rh5DG559700 Rh5DG559800 Rh6AG098700 Rh6AG205500 Rh6AG209400 Rh6AG209600 Rh6AG210000 Rh6BG090800 Rh6BG139500 Rh6BG139700 Rh6BG139800 Rh6BG139900 Rh6BG213700 Rh6BG213900 Rh6BG292900 Rh6CG087400 Rh6CG087900 Rh6CG097800 Rh6CG101700 Rh6CG102300 Rh6CG136800 Rh6CG136900 Rh6CG137000 Rh6CG216600 Rh6CG216700 Rh6CG217000 Rh6CG217100 Rh6DG123100 Rh6DG123200 Rh6DG123300 Rh6DG205800 Rh6DG206000 Rh7AG085900 Rh7AG271000 Rh7AG296100 Rh7AG371500 Rh7BG366200 Rh7CG290300 Rh7CG390200 Rh7DG088400
rosa_wichuraiana Rw0G007730 Rw0G007760 Rw0G008780 Rw0G008790 Rw0G012730 Rw0G018720 Rw0G019140 Rw0G020540 Rw0G020710 Rw0G020730 Rw0G023610 Rw1G003010 Rw1G006860 Rw1G007420 Rw1G007430 Rw2G020980 Rw2G024930 Rw3G005550 Rw4G000870 Rw4G000890 Rw4G000910 Rw4G000940 Rw4G001000 Rw4G001310 Rw4G001340 Rw4G001960 Rw4G001970 Rw4G004250 Rw4G004940 Rw4G011960 Rw4G014090 Rw4G014130 Rw4G014190 Rw4G014250 Rw4G014440 Rw4G015320 Rw4G015330 Rw4G015340 Rw4G015350 Rw4G015380 Rw4G015430 Rw4G015460 Rw4G015490 Rw4G015500 Rw4G015510 Rw4G015530 Rw4G015540 Rw4G015570 Rw4G015590 Rw4G015620 Rw4G015640 Rw4G017160 Rw5G018360 Rw5G019400 Rw5G036460 Rw5G048740 Rw5G048750 Rw5G048800 Rw5G048820 Rw5G048840 Rw5G048850 Rw5G049320 Rw6G008560 Rw6G009410 Rw6G009440 Rw6G009480 Rw6G009510 Rw6G009520 Rw6G009760 Rw6G009840 Rw6G009900 Rw6G009910 Rw6G010320 Rw6G012030 Rw6G012090 Rw6G012680 Rw6G012830 Rw6G013380 Rw6G013390 Rw6G013410 Rw6G013540 Rw6G013560 Rw6G013930 Rw6G017830 Rw6G018250 Rw6G018260 Rw7G025190 Rw7G026200 Rw7G038990 Rw7G042030 Rw7G042060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 560, 3251, 3708
Acc36I ACCTGC 1 cut(s) 1417
AccB1I GGYRCC 1 cut(s) 785
AccB7I CCANNNNNTGG 1 cut(s) 322
AccI GTMKAC 2 cut(s) 1230, 2047
AciI CCGC 3 cut(s) 1142, 2840, 2853
AclI AACGTT 2 cut(s) 1966, 2463
AclWI GGATC 9 cut(s) 286, 344, 616, 1213, 2193, 2445, 3794, 3807, 3888
AcoI YGGCCR 2 cut(s) 582, 855
AcsI RAATTY 5 cut(s) 413, 737, 844, 1978, 3167
AcuI CTGAAG 2 cut(s) 854, 3617
AdeI CACNNNGTG 1 cut(s) 2124
AfaI GTAC 5 cut(s) 568, 590, 1922, 2324, 3562
AfeI AGCGCT 1 cut(s) 2929
AfiI CCNNNNNNNGG 6 cut(s) 267, 322, 1133, 2015, 2061, 2921
AflII CTTAAG 1 cut(s) 2342
AflIII ACRYGT 2 cut(s) 2601, 3563
AhdI GACNNNNNGTC 2 cut(s) 3100, 3391
AhlI ACTAGT 1 cut(s) 3713
AjiI CACGTC 4 cut(s) 2445, 2514, 2721, 3388
AjnI CCWGG 7 cut(s) 1537, 3001, 3483, 3541, 3587, 3861, 3900
AjuI GAANNNNNNNTTGG 2 cut(s) 309, 341
AleI CACNNNNGTG 1 cut(s) 3533
AloI GAACNNNNNNTCC 2 cut(s) 639, 671
Alw21I GWGCWC 3 cut(s) 457, 1434, 2160
Alw26I GTCTC 4 cut(s) 645, 1566, 2063, 3210
Alw44I GTGCAC 1 cut(s) 2156
AlwI GGATC 9 cut(s) 286, 344, 616, 1213, 2193, 2445, 3794, 3807, 3888
AlwNI CAGNNNCTG 2 cut(s) 2954, 3451
Ama87I CYCGRG 3 cut(s) 296, 609, 1088
Aor51HI AGCGCT 1 cut(s) 2929
AoxI GGCC 8 cut(s) 112, 485, 582, 855, 1177, 1443, 1772, 3826
ApaLI GTGCAC 1 cut(s) 2156
ApeKI GCWGC 7 cut(s) 467, 1244, 1401, 1633, 2860, 2863, 3971
ApoI RAATTY 5 cut(s) 413, 737, 844, 1978, 3167
Asp700I GAANNNNTTC 2 cut(s) 1329, 2955
AspA2I CCTAGG 1 cut(s) 1201
AspLEI GCGC 1 cut(s) 2930
AspS9I GGNCC 4 cut(s) 1444, 1668, 3826, 3856
AsuC2I CCSGG 1 cut(s) 3324
AsuHPI GGTGA 8 cut(s) 16, 98, 977, 1370, 2110, 2917, 3530, 3905
AsuNHI GCTAGC 1 cut(s) 3932
AvaI CYCGRG 3 cut(s) 296, 609, 1088
AvaII GGWCC 2 cut(s) 1668, 3856
AvrII CCTAGG 1 cut(s) 1201
BaeGI GKGCMC 1 cut(s) 2160
BalI TGGCCA 2 cut(s) 584, 857
BamHI GGATCC 1 cut(s) 3799
BanI GGYRCC 1 cut(s) 785
BauI CACGAG 1 cut(s) 3906
BbsI GAAGAC 4 cut(s) 3026, 3140, 3903, 4068
Bbv12I GWGCWC 3 cut(s) 457, 1434, 2160
BbvI GCAGC 7 cut(s) 479, 1231, 1388, 1620, 2847, 2875, 3983
BcgI CGANNNNNNTGC 6 cut(s) 456, 490, 1926, 1960, 3647, 3681
BciT130I CCWGG 7 cut(s) 1539, 3003, 3485, 3543, 3589, 3863, 3902
BciVI GTATCC 1 cut(s) 85
BclI TGATCA 5 cut(s) 163, 882, 943, 2995, 3943
BcnI CCSGG 1 cut(s) 3324
BcoDI GTCTC 4 cut(s) 645, 1566, 2063, 3210
BcuI ACTAGT 1 cut(s) 3713
BfmI CTRYAG 5 cut(s) 2213, 2861, 3026, 3452, 3975
BfoI RGCGCY 1 cut(s) 2931
BfrI CTTAAG 1 cut(s) 2342
BfuAI ACCTGC 1 cut(s) 1417
BfuI GTATCC 1 cut(s) 85
BisI GCNGC 8 cut(s) 468, 1245, 1402, 1634, 2840, 2861, 2864, 3972
BlnI CCTAGG 1 cut(s) 1201
BlsI GCNGC 8 cut(s) 469, 1246, 1403, 1635, 2841, 2862, 2865, 3973
Bme1390I CCNGG 8 cut(s) 1539, 3003, 3324, 3485, 3543, 3589, 3863, 3902
Bme18I GGWCC 2 cut(s) 1668, 3856
BmeRI GACNNNNNGTC 2 cut(s) 3100, 3391
BmeT110I CYCGRG 3 cut(s) 296, 609, 1088
BmgBI CACGTC 4 cut(s) 2445, 2514, 2721, 3388
BmgT120I GGNCC 4 cut(s) 1444, 1668, 3826, 3856
BmiI GGNNCC 5 cut(s) 787, 1669, 3801, 3857, 4035
BmrFI CCNGG 8 cut(s) 1539, 3003, 3324, 3485, 3543, 3589, 3863, 3902
BmrI ACTGGG 1 cut(s) 587
BmtI GCTAGC 1 cut(s) 3936
BmuI ACTGGG 1 cut(s) 587
BpiI GAAGAC 4 cut(s) 3026, 3140, 3903, 4068
BplI GAGNNNNNCTC 4 cut(s) 491, 523, 1269, 1301
BpmI CTGGAG 2 cut(s) 3326, 3467
BpuEI CTTGAG 4 cut(s) 1158, 1777, 2054, 2087
BpuMI CCSGG 1 cut(s) 3324
Bsa29I ATCGAT 1 cut(s) 2360
BsaBI GATNNNNATC 4 cut(s) 230, 942, 2805, 3581
BsaI GGTCTC 1 cut(s) 1566
Bsc4I CCNNNNNNNGG 6 cut(s) 267, 322, 1133, 2015, 2061, 2921
Bse118I RCCGGY 1 cut(s) 3434
Bse1I ACTGG 6 cut(s) 516, 593, 1603, 2907, 3309, 4070
Bse3DI GCAATG 3 cut(s) 502, 1338, 3934
Bse8I GATNNNNATC 4 cut(s) 230, 942, 2805, 3581
BseBI CCWGG 7 cut(s) 1539, 3003, 3485, 3543, 3589, 3863, 3902
BseCI ATCGAT 1 cut(s) 2360
BseJI GATNNNNATC 4 cut(s) 230, 942, 2805, 3581
BseLI CCNNNNNNNGG 6 cut(s) 267, 322, 1133, 2015, 2061, 2921
BseMI GCAATG 3 cut(s) 502, 1338, 3934
BseMII CTCAG 3 cut(s) 184, 474, 3594
BseNI ACTGG 6 cut(s) 516, 593, 1603, 2907, 3309, 4070
BseRI GAGGAG 1 cut(s) 192
BseSI GKGCMC 1 cut(s) 2160
BseXI GCAGC 7 cut(s) 479, 1231, 1388, 1620, 2847, 2875, 3983
BseYI CCCAGC 1 cut(s) 3021
BsgI GTGCAG 1 cut(s) 2967
BshFI GGCC 8 cut(s) 114, 487, 584, 857, 1179, 1445, 1774, 3828
BshNI GGYRCC 1 cut(s) 785
BshVI ATCGAT 1 cut(s) 2360
BsiHKAI GWGCWC 3 cut(s) 457, 1434, 2160
BsiHKCI CYCGRG 3 cut(s) 296, 609, 1088
BsiSI CCGG 3 cut(s) 3152, 3323, 3435
BslFI GGGAC 1 cut(s) 1681
BslI CCNNNNNNNGG 6 cut(s) 267, 322, 1133, 2015, 2061, 2921
BsmAI GTCTC 4 cut(s) 645, 1566, 2063, 3210
BsmBI CGTCTC 1 cut(s) 645
BsmFI GGGAC 1 cut(s) 1681
BsmI GAATGC 1 cut(s) 413
BsnI GGCC 8 cut(s) 114, 487, 584, 857, 1179, 1445, 1774, 3828
Bso31I GGTCTC 1 cut(s) 1566
BsoBI CYCGRG 3 cut(s) 296, 609, 1088
Bsp1286I GDGCHC 3 cut(s) 457, 1434, 2160
Bsp19I CCATGG 3 cut(s) 53, 2079, 3829
BspACI CCGC 3 cut(s) 1142, 2840, 2853
BspANI GGCC 8 cut(s) 114, 487, 584, 857, 1179, 1445, 1774, 3828
BspCNI CTCAG 3 cut(s) 183, 473, 3595
BspDI ATCGAT 1 cut(s) 2360
BspHI TCATGA 6 cut(s) 403, 526, 1078, 1564, 3547, 3757
BspLI GGNNCC 5 cut(s) 787, 1669, 3801, 3857, 4035
BspMAI CTGCAG 3 cut(s) 2217, 2865, 3456
BspMI ACCTGC 1 cut(s) 1417
BspOI GCTAGC 1 cut(s) 3936
BspPI GGATC 9 cut(s) 286, 344, 616, 1213, 2193, 2445, 3794, 3807, 3888
BspT107I GGYRCC 1 cut(s) 785
BspTI CTTAAG 1 cut(s) 2342
BspTNI GGTCTC 1 cut(s) 1566
BsrDI GCAATG 3 cut(s) 502, 1338, 3934
BsrFI RCCGGY 1 cut(s) 3434
BsrI ACTGG 6 cut(s) 516, 593, 1603, 2907, 3309, 4070
BssAI RCCGGY 1 cut(s) 3434
BssSI CACGAG 1 cut(s) 3906
BssT1I CCWWGG 9 cut(s) 53, 1201, 2079, 2241, 2448, 2517, 2655, 2724, 3829
Bst2BI CACGAG 1 cut(s) 3906
Bst2UI CCWGG 7 cut(s) 1539, 3003, 3485, 3543, 3589, 3863, 3902
Bst4CI ACNGT 9 cut(s) 219, 566, 1318, 1712, 1858, 2322, 2846, 3098, 3417
Bst6I CTCTTC 3 cut(s) 28, 443, 643
BstAFI CTTAAG 1 cut(s) 2342
BstAPI GCANNNNNTGC 1 cut(s) 1486
BstC8I GCNNGC 6 cut(s) 1242, 3157, 3432, 3436, 3934, 3960
BstDEI CTNAG 9 cut(s) 170, 460, 757, 916, 1413, 1694, 1907, 2400, 3603
BstDSI CCRYGG 3 cut(s) 53, 2079, 3829
BstENI CCTNNNNNAGG 1 cut(s) 2059
BstH2I RGCGCY 1 cut(s) 2931
BstHHI GCGC 1 cut(s) 2930
BstMAI GTCTC 4 cut(s) 645, 1566, 2063, 3210
BstNI CCWGG 7 cut(s) 1539, 3003, 3485, 3543, 3589, 3863, 3902
BstNSI RCATGY 4 cut(s) 1687, 3159, 3434, 3567
BstSCI CCNGG 8 cut(s) 1537, 3001, 3322, 3483, 3541, 3587, 3861, 3900
BstSFI CTRYAG 5 cut(s) 2213, 2861, 3026, 3452, 3975
BstSLI GKGCMC 1 cut(s) 2160
BstV1I GCAGC 7 cut(s) 479, 1231, 1388, 1620, 2847, 2875, 3983
BstV2I GAAGAC 4 cut(s) 3026, 3140, 3903, 4068
BstX2I RGATCY 6 cut(s) 291, 621, 1205, 2185, 2437, 3799
BstYI RGATCY 6 cut(s) 291, 621, 1205, 2185, 2437, 3799
Bsu15I ATCGAT 1 cut(s) 2360
BsuI GTATCC 1 cut(s) 85
BsuRI GGCC 8 cut(s) 114, 487, 584, 857, 1179, 1445, 1774, 3828
BsuTUI ATCGAT 1 cut(s) 2360
BtgI CCRYGG 3 cut(s) 53, 2079, 3829
BtrI CACGTC 4 cut(s) 2445, 2514, 2721, 3388
BtsI GCAGTG 1 cut(s) 3461
BtsIMutI CAGTG 3 cut(s) 523, 1323, 3461
BveI ACCTGC 1 cut(s) 1417
Cac8I GCNNGC 6 cut(s) 1242, 3157, 3432, 3436, 3934, 3960
CaiI CAGNNNCTG 2 cut(s) 2954, 3451
CciI TCATGA 6 cut(s) 403, 526, 1078, 1564, 3547, 3757
CfoI GCGC 1 cut(s) 2930
Cfr10I RCCGGY 1 cut(s) 3434
Cfr13I GGNCC 4 cut(s) 1444, 1668, 3826, 3856
ClaI ATCGAT 1 cut(s) 2360
CseI GACGC 5 cut(s) 122, 134, 2540, 2747, 3020
CsiI ACCWGGT 1 cut(s) 3861
Csp6I GTAC 5 cut(s) 567, 589, 1921, 2323, 3561
CviQI GTAC 5 cut(s) 567, 589, 1921, 2323, 3561
DdeI CTNAG 9 cut(s) 170, 460, 757, 916, 1413, 1694, 1907, 2400, 3603
DraI TTTAAA 1 cut(s) 1114
DraIII CACNNNGTG 1 cut(s) 2124
DriI GACNNNNNGTC 2 cut(s) 3100, 3391
EaeI YGGCCR 2 cut(s) 582, 855
Eam1104I CTCTTC 3 cut(s) 28, 443, 643
Eam1105I GACNNNNNGTC 2 cut(s) 3100, 3391
EarI CTCTTC 3 cut(s) 28, 443, 643
Eco130I CCWWGG 9 cut(s) 53, 1201, 2079, 2241, 2448, 2517, 2655, 2724, 3829
Eco147I AGGCCT 1 cut(s) 1179
Eco31I GGTCTC 1 cut(s) 1566
Eco47I GGWCC 2 cut(s) 1668, 3856
Eco47III AGCGCT 1 cut(s) 2929
Eco57I CTGAAG 2 cut(s) 854, 3617
Eco88I CYCGRG 3 cut(s) 296, 609, 1088
EcoNI CCTNNNNNAGG 1 cut(s) 2059
EcoO109I RGGNCCY 1 cut(s) 1444
EcoRII CCWGG 7 cut(s) 1537, 3001, 3483, 3541, 3587, 3861, 3900
EcoT14I CCWWGG 9 cut(s) 53, 1201, 2079, 2241, 2448, 2517, 2655, 2724, 3829
EcoT22I ATGCAT 3 cut(s) 259, 1482, 3161
ErhI CCWWGG 9 cut(s) 53, 1201, 2079, 2241, 2448, 2517, 2655, 2724, 3829
Esp3I CGTCTC 1 cut(s) 645
FalI AAGNNNNNCTT 4 cut(s) 257, 289, 1317, 1349
FaqI GGGAC 1 cut(s) 1681
FauNDI CATATG 1 cut(s) 660
FbaI TGATCA 5 cut(s) 163, 882, 943, 2995, 3943
FblI GTMKAC 2 cut(s) 1230, 2047
Fnu4HI GCNGC 8 cut(s) 468, 1245, 1402, 1634, 2840, 2861, 2864, 3972
Fsp4HI GCNGC 8 cut(s) 468, 1245, 1402, 1634, 2840, 2861, 2864, 3972
GlaI GCGC 1 cut(s) 2929
GluI GCNGC 8 cut(s) 468, 1245, 1402, 1634, 2840, 2861, 2864, 3972
GsaI CCCAGC 1 cut(s) 3025
GsuI CTGGAG 2 cut(s) 3326, 3467
HaeII RGCGCY 1 cut(s) 2931
HaeIII GGCC 8 cut(s) 114, 487, 584, 857, 1179, 1445, 1774, 3828
HapII CCGG 3 cut(s) 3152, 3323, 3435
HgaI GACGC 5 cut(s) 122, 134, 2540, 2747, 3020
HhaI GCGC 1 cut(s) 2930
Hin6I GCGC 1 cut(s) 2928
HinP1I GCGC 1 cut(s) 2928
HincII GTYRAC 1 cut(s) 2259
HindII GTYRAC 1 cut(s) 2259
HindIII AAGCTT 3 cut(s) 629, 1326, 1392
HpaII CCGG 3 cut(s) 3152, 3323, 3435
HphI GGTGA 8 cut(s) 16, 98, 977, 1370, 2110, 2917, 3530, 3905
Hpy166II GTNNAC 9 cut(s) 1231, 1516, 1576, 2048, 2158, 2259, 3105, 3526, 3859
Hpy8I GTNNAC 9 cut(s) 1231, 1516, 1576, 2048, 2158, 2259, 3105, 3526, 3859
Hpy99I CGWCG 1 cut(s) 128
HpyCH4III ACNGT 9 cut(s) 219, 566, 1318, 1712, 1858, 2322, 2846, 3098, 3417
HpyF3I CTNAG 9 cut(s) 170, 460, 757, 916, 1413, 1694, 1907, 2400, 3603
HspAI GCGC 1 cut(s) 2928
KroI GCCGGC 1 cut(s) 3434
KroNI GCCGGC 1 cut(s) 3436
Ksp22I TGATCA 5 cut(s) 163, 882, 943, 2995, 3943
LmnI GCTCC 4 cut(s) 1630, 2925, 3307, 3843
Lsp1109I GCAGC 7 cut(s) 479, 1231, 1388, 1620, 2847, 2875, 3983
MabI ACCWGGT 1 cut(s) 3861
MaeIII GTNAC 4 cut(s) 813, 1295, 1466, 2905
MflI RGATCY 6 cut(s) 291, 621, 1205, 2185, 2437, 3799
MhlI GDGCHC 3 cut(s) 457, 1434, 2160
MlsI TGGCCA 2 cut(s) 584, 857
MluNI TGGCCA 2 cut(s) 584, 857
MlyI GAGTC 6 cut(s) 1532, 2053, 2177, 2398, 3110, 3755
MmeI TCCRAC 6 cut(s) 69, 1704, 1996, 2072, 3255, 4070
Mox20I TGGCCA 2 cut(s) 584, 857
Mph1103I ATGCAT 3 cut(s) 259, 1482, 3161
MroNI GCCGGC 1 cut(s) 3434
MroXI GAANNNNTTC 2 cut(s) 1329, 2955
MscI TGGCCA 2 cut(s) 584, 857
MslI CAYNNNNRTG 8 cut(s) 155, 1475, 1569, 1625, 3386, 3533, 3762, 3888
Msp20I TGGCCA 2 cut(s) 584, 857
MspA1I CMGCKG 3 cut(s) 3174, 3424, 3974
MspCI CTTAAG 1 cut(s) 2342
MspI CCGG 3 cut(s) 3152, 3323, 3435
MspR9I CCNGG 8 cut(s) 1539, 3003, 3324, 3485, 3543, 3589, 3863, 3902
Mva1269I GAATGC 1 cut(s) 413
MvaI CCWGG 7 cut(s) 1539, 3003, 3485, 3543, 3589, 3863, 3902
NaeI GCCGGC 1 cut(s) 3436
NciI CCSGG 1 cut(s) 3324
NcoI CCATGG 3 cut(s) 53, 2079, 3829
NdeI CATATG 1 cut(s) 660
NgoMIV GCCGGC 1 cut(s) 3434
NheI GCTAGC 1 cut(s) 3932
NlaIV GGNNCC 5 cut(s) 787, 1669, 3801, 3857, 4035
NmuCI GTSAC 3 cut(s) 813, 1466, 2905
NsiI ATGCAT 3 cut(s) 259, 1482, 3161
NspI RCATGY 4 cut(s) 1687, 3159, 3434, 3567
OliI CACNNNNGTG 1 cut(s) 3533
PaeI GCATGC 2 cut(s) 3159, 3434
PaeR7I CTCGAG 2 cut(s) 296, 1088
PagI TCATGA 6 cut(s) 403, 526, 1078, 1564, 3547, 3757
PceI AGGCCT 1 cut(s) 1179
PciI ACATGT 1 cut(s) 3563
PctI GAATGC 1 cut(s) 413
PdiI GCCGGC 1 cut(s) 3436
PdmI GAANNNNTTC 2 cut(s) 1329, 2955
PflFI GACNNNGTC 1 cut(s) 3745
PflMI CCANNNNNTGG 1 cut(s) 322
PfoI TCCNGGA 2 cut(s) 3322, 3483
PkrI GCNGC 8 cut(s) 469, 1246, 1403, 1635, 2841, 2862, 2865, 3973
PleI GAGTC 6 cut(s) 1531, 2052, 2176, 2398, 3109, 3754
PpsI GAGTC 6 cut(s) 1531, 2052, 2176, 2398, 3109, 3754
PscI ACATGT 1 cut(s) 3563
PsiI TTATAA 3 cut(s) 560, 3251, 3708
Psp1406I AACGTT 2 cut(s) 1966, 2463
Psp6I CCWGG 7 cut(s) 1537, 3001, 3483, 3541, 3587, 3861, 3900
PspFI CCCAGC 1 cut(s) 3021
PspGI CCWGG 7 cut(s) 1537, 3001, 3483, 3541, 3587, 3861, 3900
PspN4I GGNNCC 5 cut(s) 787, 1669, 3801, 3857, 4035
PspPI GGNCC 4 cut(s) 1444, 1668, 3826, 3856
PspXI VCTCGAGB 1 cut(s) 296
PstI CTGCAG 3 cut(s) 2217, 2865, 3456
PstNI CAGNNNCTG 2 cut(s) 2954, 3451
PsuI RGATCY 6 cut(s) 291, 621, 1205, 2185, 2437, 3799
PsyI GACNNNGTC 1 cut(s) 3745
PvuII CAGCTG 3 cut(s) 3174, 3424, 3974
RsaI GTAC 5 cut(s) 568, 590, 1922, 2324, 3562
RsaNI GTAC 5 cut(s) 567, 589, 1921, 2323, 3561
RseI CAYNNNNRTG 8 cut(s) 155, 1475, 1569, 1625, 3386, 3533, 3762, 3888
SatI GCNGC 8 cut(s) 468, 1245, 1402, 1634, 2840, 2861, 2864, 3972
Sau96I GGNCC 4 cut(s) 1444, 1668, 3826, 3856
SchI GAGTC 6 cut(s) 1532, 2053, 2177, 2398, 3110, 3755
ScrFI CCNGG 8 cut(s) 1539, 3003, 3324, 3485, 3543, 3589, 3863, 3902
SduI GDGCHC 3 cut(s) 457, 1434, 2160
SexAI ACCWGGT 1 cut(s) 3861
SfcI CTRYAG 5 cut(s) 2213, 2861, 3026, 3452, 3975
Sfr274I CTCGAG 2 cut(s) 296, 1088
SinI GGWCC 2 cut(s) 1668, 3856
SlaI CTCGAG 2 cut(s) 296, 1088
SmiMI CAYNNNNRTG 8 cut(s) 155, 1475, 1569, 1625, 3386, 3533, 3762, 3888
SmlI CTYRAG 7 cut(s) 296, 1088, 1173, 1756, 2033, 2066, 2342
SmoI CTYRAG 7 cut(s) 296, 1088, 1173, 1756, 2033, 2066, 2342
SpeI ACTAGT 1 cut(s) 3713
SphI GCATGC 2 cut(s) 3159, 3434
SseBI AGGCCT 1 cut(s) 1179
SsiI CCGC 3 cut(s) 1142, 2840, 2853
StuI AGGCCT 1 cut(s) 1179
StyD4I CCNGG 8 cut(s) 1537, 3001, 3322, 3483, 3541, 3587, 3861, 3900
StyI CCWWGG 9 cut(s) 53, 1201, 2079, 2241, 2448, 2517, 2655, 2724, 3829
TaaI ACNGT 9 cut(s) 219, 566, 1318, 1712, 1858, 2322, 2846, 3098, 3417
TatI WGTACW 1 cut(s) 566
TauI GCSGC 1 cut(s) 2842
TscAI CASTG 3 cut(s) 523, 1323, 3461
TseFI GTSAC 3 cut(s) 813, 1466, 2905
TseI GCWGC 7 cut(s) 467, 1244, 1401, 1633, 2860, 2863, 3971
Tsp45I GTSAC 3 cut(s) 813, 1466, 2905
TspGWI ACGGA 1 cut(s) 2002
TspRI CASTG 3 cut(s) 523, 1323, 3461
Tth111I GACNNNGTC 1 cut(s) 3745
Van91I CCANNNNNTGG 1 cut(s) 322
Vha464I CTTAAG 1 cut(s) 2342
VneI GTGCAC 1 cut(s) 2156
VpaK11BI GGWCC 2 cut(s) 1668, 3856
XagI CCTNNNNNAGG 1 cut(s) 2059
XapI RAATTY 5 cut(s) 413, 737, 844, 1978, 3167
XbaI TCTAGA 1 cut(s) 2878
XceI RCATGY 4 cut(s) 1687, 3159, 3434, 3567
XcmI CCANNNNNNNNNTGG 2 cut(s) 271, 2179
XhoI CTCGAG 2 cut(s) 296, 1088
XmaJI CCTAGG 1 cut(s) 1201
XmiI GTMKAC 2 cut(s) 1230, 2047
XmnI GAANNNNTTC 2 cut(s) 1329, 2955
Zsp2I ATGCAT 3 cut(s) 259, 1482, 3161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.