TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRR_14 | PF23598 | 70 - 171 | 7.5e-07 | Leucine-rich repeat region |
| LRR_Zer-1 | PF25013 | 163 - 259 | 9.8e-07 | Zer-1-like, Leucine-rich repeats |
| LRR_13 | PF23286 | 212 - 384 | 2.5e-22 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 238 - 297 | 8.3e-06 | Leucine-rich repeat region |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 621, 876 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1163 |
| AciI | CCGC | 2 cut(s) | 180, 385 |
| AclWI | GGATC | 2 cut(s) | 312, 522 |
| AcsI | RAATTY | 6 cut(s) | 211, 235, 470, 508, 538, 853 |
| AcuI | CTGAAG | 1 cut(s) | 259 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1163 |
| AgsI | TTSAA | 7 cut(s) | 219, 295, 376, 427, 583, 788, 922 |
| AluBI | AGCT | 7 cut(s) | 160, 177, 453, 463, 865, 955, 1150 |
| AluI | AGCT | 7 cut(s) | 160, 177, 453, 463, 865, 955, 1150 |
| Alw21I | GWGCWC | 1 cut(s) | 32 |
| Alw26I | GTCTC | 2 cut(s) | 712, 1123 |
| AlwI | GGATC | 2 cut(s) | 312, 522 |
| AoxI | GGCC | 1 cut(s) | 101 |
| ApeKI | GCWGC | 4 cut(s) | 174, 177, 387, 834 |
| ApoI | RAATTY | 6 cut(s) | 211, 235, 470, 508, 538, 853 |
| AspS9I | GGNCC | 1 cut(s) | 382 |
| AsuHPI | GGTGA | 1 cut(s) | 1075 |
| AvaII | GGWCC | 1 cut(s) | 382 |
| BbsI | GAAGAC | 1 cut(s) | 1061 |
| Bbv12I | GWGCWC | 1 cut(s) | 32 |
| BbvI | GCAGC | 4 cut(s) | 164, 186, 374, 846 |
| BccI | CCATC | 3 cut(s) | 136, 700, 1098 |
| BcoDI | GTCTC | 2 cut(s) | 712, 1123 |
| BfaI | CTAG | 3 cut(s) | 572, 731, 1136 |
| BisI | GCNGC | 4 cut(s) | 175, 178, 388, 835 |
| BlsI | GCNGC | 4 cut(s) | 176, 179, 389, 836 |
| Bme18I | GGWCC | 1 cut(s) | 382 |
| BmgT120I | GGNCC | 1 cut(s) | 382 |
| BmiI | GGNNCC | 1 cut(s) | 336 |
| BmsI | GCATC | 2 cut(s) | 656, 1089 |
| BpiI | GAAGAC | 1 cut(s) | 1061 |
| BpmI | CTGGAG | 1 cut(s) | 78 |
| BpuEI | CTTGAG | 1 cut(s) | 485 |
| BsaAI | YACGTR | 1 cut(s) | 33 |
| BsaJI | CCNNGG | 1 cut(s) | 432 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1163 |
| Bse1I | ACTGG | 2 cut(s) | 82, 681 |
| BseDI | CCNNGG | 1 cut(s) | 432 |
| BseGI | GGATG | 3 cut(s) | 711, 763, 983 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1163 |
| BseMII | CTCAG | 1 cut(s) | 814 |
| BseNI | ACTGG | 2 cut(s) | 82, 681 |
| BseXI | GCAGC | 4 cut(s) | 164, 186, 374, 846 |
| BseYI | CCCAGC | 1 cut(s) | 1020 |
| BsgI | GTGCAG | 1 cut(s) | 853 |
| BshFI | GGCC | 1 cut(s) | 103 |
| BsiHKAI | GWGCWC | 1 cut(s) | 32 |
| BslFI | GGGAC | 2 cut(s) | 216, 781 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1163 |
| BsmAI | GTCTC | 2 cut(s) | 712, 1123 |
| BsmFI | GGGAC | 2 cut(s) | 216, 781 |
| BsmI | GAATGC | 1 cut(s) | 544 |
| BsnI | GGCC | 1 cut(s) | 103 |
| Bsp1286I | GDGCHC | 1 cut(s) | 32 |
| Bsp143I | GATC | 3 cut(s) | 304, 514, 1042 |
| BspACI | CCGC | 2 cut(s) | 180, 385 |
| BspANI | GGCC | 1 cut(s) | 103 |
| BspCNI | CTCAG | 1 cut(s) | 813 |
| BspHI | TCATGA | 1 cut(s) | 1005 |
| BspLI | GGNNCC | 1 cut(s) | 336 |
| BspPI | GGATC | 2 cut(s) | 312, 522 |
| BsrI | ACTGG | 2 cut(s) | 82, 681 |
| BssECI | CCNNGG | 1 cut(s) | 432 |
| BssMI | GATC | 3 cut(s) | 304, 514, 1042 |
| Bst4CI | ACNGT | 2 cut(s) | 317, 831 |
| Bst6I | CTCTTC | 1 cut(s) | 483 |
| BstBAI | YACGTR | 1 cut(s) | 33 |
| BstC8I | GCNNGC | 3 cut(s) | 461, 736, 1078 |
| BstDEI | CTNAG | 2 cut(s) | 11, 800 |
| BstDSI | CCRYGG | 1 cut(s) | 432 |
| BstF5I | GGATG | 3 cut(s) | 711, 763, 983 |
| BstKTI | GATC | 3 cut(s) | 307, 517, 1045 |
| BstMAI | GTCTC | 2 cut(s) | 712, 1123 |
| BstMBI | GATC | 3 cut(s) | 304, 514, 1042 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 100 |
| BstV1I | GCAGC | 4 cut(s) | 164, 186, 374, 846 |
| BstV2I | GAAGAC | 1 cut(s) | 1061 |
| BstX2I | RGATCY | 2 cut(s) | 304, 514 |
| BstYI | RGATCY | 2 cut(s) | 304, 514 |
| BsuRI | GGCC | 1 cut(s) | 103 |
| BtgI | CCRYGG | 1 cut(s) | 432 |
| BtgZI | GCGATG | 1 cut(s) | 1117 |
| BtsCI | GGATG | 3 cut(s) | 711, 763, 983 |
| BtsI | GCAGTG | 1 cut(s) | 745 |
| BtsIMutI | CAGTG | 2 cut(s) | 283, 745 |
| Cac8I | GCNNGC | 3 cut(s) | 461, 736, 1078 |
| CciI | TCATGA | 1 cut(s) | 1005 |
| Cfr13I | GGNCC | 1 cut(s) | 382 |
| CviAII | CATG | 2 cut(s) | 140, 1006 |
| DdeI | CTNAG | 2 cut(s) | 11, 800 |
| DpnI | GATC | 3 cut(s) | 306, 516, 1044 |
| DpnII | GATC | 3 cut(s) | 304, 514, 1042 |
| Eam1104I | CTCTTC | 1 cut(s) | 483 |
| EarI | CTCTTC | 1 cut(s) | 483 |
| Eco32I | GATATC | 1 cut(s) | 745 |
| Eco47I | GGWCC | 1 cut(s) | 382 |
| Eco57I | CTGAAG | 1 cut(s) | 259 |
| EcoRV | GATATC | 1 cut(s) | 745 |
| FaeI | CATG | 2 cut(s) | 143, 1009 |
| FaqI | GGGAC | 2 cut(s) | 216, 781 |
| FatI | CATG | 2 cut(s) | 139, 1005 |
| Fnu4HI | GCNGC | 4 cut(s) | 175, 178, 388, 835 |
| FokI | GGATG | 3 cut(s) | 718, 770, 990 |
| Fsp4HI | GCNGC | 4 cut(s) | 175, 178, 388, 835 |
| FspBI | CTAG | 3 cut(s) | 572, 731, 1136 |
| GluI | GCNGC | 4 cut(s) | 175, 178, 388, 835 |
| GsaI | CCCAGC | 1 cut(s) | 1024 |
| GsuI | CTGGAG | 1 cut(s) | 78 |
| HaeIII | GGCC | 1 cut(s) | 103 |
| Hin1II | CATG | 2 cut(s) | 143, 1009 |
| HincII | GTYRAC | 1 cut(s) | 1096 |
| HindII | GTYRAC | 1 cut(s) | 1096 |
| HindIII | AAGCTT | 3 cut(s) | 461, 863, 1148 |
| HinfI | GANTC | 8 cut(s) | 7, 183, 251, 282, 351, 710, 761, 1131 |
| HphI | GGTGA | 1 cut(s) | 1075 |
| Hpy166II | GTNNAC | 2 cut(s) | 382, 1096 |
| Hpy188I | TCNGA | 5 cut(s) | 133, 478, 749, 974, 991 |
| Hpy188III | TCNNGA | 5 cut(s) | 57, 338, 522, 653, 1006 |
| Hpy8I | GTNNAC | 2 cut(s) | 382, 1096 |
| HpyAV | CCTTC | 2 cut(s) | 193, 365 |
| HpyCH4III | ACNGT | 2 cut(s) | 317, 831 |
| HpyCH4IV | ACGT | 3 cut(s) | 32, 205, 958 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 100 |
| HpyF3I | CTNAG | 2 cut(s) | 11, 800 |
| HpySE526I | ACGT | 3 cut(s) | 32, 205, 958 |
| Hsp92II | CATG | 2 cut(s) | 143, 1009 |
| Kzo9I | GATC | 3 cut(s) | 304, 514, 1042 |
| Lsp1109I | GCAGC | 4 cut(s) | 164, 186, 374, 846 |
| LweI | GCATC | 2 cut(s) | 656, 1089 |
| MaeI | CTAG | 3 cut(s) | 572, 731, 1136 |
| MaeII | ACGT | 3 cut(s) | 32, 205, 958 |
| MaeIII | GTNAC | 2 cut(s) | 359, 367 |
| MalI | GATC | 3 cut(s) | 306, 516, 1044 |
| MboI | GATC | 3 cut(s) | 304, 514, 1042 |
| MboII | GAAGA | 2 cut(s) | 500, 1061 |
| MfeI | CAATTG | 1 cut(s) | 765 |
| MflI | RGATCY | 2 cut(s) | 304, 514 |
| MhlI | GDGCHC | 1 cut(s) | 32 |
| MlyI | GAGTC | 1 cut(s) | 1125 |
| MmeI | TCCRAC | 3 cut(s) | 102, 282, 328 |
| MnlI | CCTC | 7 cut(s) | 81, 325, 460, 809, 968, 1013, 1111 |
| MseI | TTAA | 4 cut(s) | 239, 534, 965, 1053 |
| MslI | CAYNNNNRTG | 2 cut(s) | 35, 193 |
| MspA1I | CMGCKG | 2 cut(s) | 177, 387 |
| MunI | CAATTG | 1 cut(s) | 765 |
| Mva1269I | GAATGC | 1 cut(s) | 544 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 100 |
| NdeII | GATC | 3 cut(s) | 304, 514, 1042 |
| NlaIII | CATG | 2 cut(s) | 143, 1009 |
| NlaIV | GGNNCC | 1 cut(s) | 336 |
| PagI | TCATGA | 1 cut(s) | 1005 |
| PctI | GAATGC | 1 cut(s) | 544 |
| PfeI | GAWTC | 7 cut(s) | 7, 183, 251, 282, 351, 710, 761 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1163 |
| PkrI | GCNGC | 4 cut(s) | 176, 179, 389, 836 |
| PleI | GAGTC | 1 cut(s) | 1125 |
| PpsI | GAGTC | 1 cut(s) | 1125 |
| Ppu21I | YACGTR | 1 cut(s) | 33 |
| PsiI | TTATAA | 2 cut(s) | 621, 876 |
| PspFI | CCCAGC | 1 cut(s) | 1020 |
| PspN4I | GGNNCC | 1 cut(s) | 336 |
| PspPI | GGNCC | 1 cut(s) | 382 |
| PsuI | RGATCY | 2 cut(s) | 304, 514 |
| PvuII | CAGCTG | 1 cut(s) | 177 |
| RseI | CAYNNNNRTG | 2 cut(s) | 35, 193 |
| SaqAI | TTAA | 4 cut(s) | 239, 534, 965, 1053 |
| SatI | GCNGC | 4 cut(s) | 175, 178, 388, 835 |
| Sau3AI | GATC | 3 cut(s) | 304, 514, 1042 |
| Sau96I | GGNCC | 1 cut(s) | 382 |
| SchI | GAGTC | 1 cut(s) | 1125 |
| SduI | GDGCHC | 1 cut(s) | 32 |
| SfaNI | GCATC | 2 cut(s) | 656, 1089 |
| SinI | GGWCC | 1 cut(s) | 382 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 35, 193 |
| SmlI | CTYRAG | 1 cut(s) | 464 |
| SmoI | CTYRAG | 1 cut(s) | 464 |
| SsiI | CCGC | 2 cut(s) | 180, 385 |
| SspI | AATATT | 2 cut(s) | 166, 625 |
| SspMI | CTAG | 3 cut(s) | 572, 731, 1136 |
| TaaI | ACNGT | 2 cut(s) | 317, 831 |
| TaiI | ACGT | 3 cut(s) | 35, 208, 961 |
| TfiI | GAWTC | 7 cut(s) | 7, 183, 251, 282, 351, 710, 761 |
| Tru1I | TTAA | 4 cut(s) | 239, 534, 965, 1053 |
| Tru9I | TTAA | 4 cut(s) | 239, 534, 965, 1053 |
| TscAI | CASTG | 2 cut(s) | 283, 745 |
| TseI | GCWGC | 4 cut(s) | 174, 177, 387, 834 |
| TspDTI | ATGAA | 5 cut(s) | 60, 128, 248, 489, 774 |
| TspGWI | ACGGA | 2 cut(s) | 102, 421 |
| TspRI | CASTG | 2 cut(s) | 283, 745 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1163 |
| VpaK11BI | GGWCC | 1 cut(s) | 382 |
| XapI | RAATTY | 6 cut(s) | 211, 235, 470, 508, 538, 853 |
| XspI | CTAG | 3 cut(s) | 572, 731, 1136 |