TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 1 - 148 | 3.8e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 218 - 288 | 1.3e-16 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_4 | PF12799 | 452 - 495 | 2.3e-06 | Leucine Rich repeats (2 copies) |
| LRR_4 | PF12799 | 521 - 564 | 6.4e-06 | Leucine Rich repeats (2 copies) |
| LRR_4 | PF12799 | 544 - 587 | 4.6e-07 | Leucine Rich repeats (2 copies) |
| LRR_EndoS | PF23952 | 558 - 631 | 9.1e-06 | Endo-beta-N-acetylglucosaminidase EndoS LRR domain |
| LRR_R13L1-DRL21 | PF25019 | 563 - 623 | 4.7e-06 | R13L1/DRL21 LRRs |
| LRR_4 | PF12799 | 567 - 610 | 9.7e-08 | Leucine Rich repeats (2 copies) |
| LRR_4 | PF12799 | 590 - 633 | 6.3e-08 | Leucine Rich repeats (2 copies) |
| LRR_4 | PF12799 | 613 - 656 | 4.4e-06 | Leucine Rich repeats (2 copies) |
| LRR_4 | PF12799 | 636 - 679 | 2.1e-06 | Leucine Rich repeats (2 copies) |
| LRR_13 | PF23286 | 877 - 1049 | 7.2e-18 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 886 - 960 | 7e-07 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 2244, 2998 |
| AccI | GTMKAC | 1 cut(s) | 912 |
| AccII | CGCG | 1 cut(s) | 310 |
| AccIII | TCCGGA | 1 cut(s) | 3106 |
| AciI | CCGC | 4 cut(s) | 308, 2244, 2998, 3203 |
| AclI | AACGTT | 2 cut(s) | 343, 3123 |
| AclWI | GGATC | 3 cut(s) | 2280, 2556, 2763 |
| AcyI | GRCGYC | 1 cut(s) | 3206 |
| AfaI | GTAC | 7 cut(s) | 940, 1318, 1456, 1801, 1870, 2008, 2353 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1498, 1567, 2119, 2679, 2916 |
| AflII | CTTAAG | 1 cut(s) | 2170 |
| AflIII | ACRYGT | 2 cut(s) | 478, 1226 |
| AjiI | CACGTC | 1 cut(s) | 253 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2721, 2753 |
| Alw21I | GWGCWC | 2 cut(s) | 180, 1164 |
| Alw26I | GTCTC | 3 cut(s) | 131, 2535, 3085 |
| Alw44I | GTGCAC | 1 cut(s) | 176 |
| AlwI | GGATC | 3 cut(s) | 2280, 2556, 2763 |
| Ama87I | CYCGRG | 1 cut(s) | 875 |
| Aor13HI | TCCGGA | 1 cut(s) | 3106 |
| AoxI | GGCC | 2 cut(s) | 304, 499 |
| ApaLI | GTGCAC | 1 cut(s) | 176 |
| ApeKI | GCWGC | 4 cut(s) | 312, 885, 1176, 2793 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 660 |
| AspLEI | GCGC | 2 cut(s) | 312, 2923 |
| AspS9I | GGNCC | 3 cut(s) | 305, 590, 2821 |
| AsuC2I | CCSGG | 2 cut(s) | 876, 877 |
| AsuHPI | GGTGA | 4 cut(s) | 701, 760, 855, 3037 |
| AvaI | CYCGRG | 1 cut(s) | 875 |
| AvaII | GGWCC | 2 cut(s) | 590, 2821 |
| AxyI | CCTNAGG | 1 cut(s) | 594 |
| BaeGI | GKGCMC | 1 cut(s) | 180 |
| BanII | GRGCYC | 1 cut(s) | 1164 |
| BbsI | GAAGAC | 2 cut(s) | 3023, 3071 |
| Bbv12I | GWGCWC | 2 cut(s) | 180, 1164 |
| BbvI | GCAGC | 4 cut(s) | 324, 897, 1163, 2780 |
| BccI | CCATC | 7 cut(s) | 295, 1138, 2521, 2659, 2673, 2687, 2882 |
| BceAI | ACGGC | 1 cut(s) | 2773 |
| BciVI | GTATCC | 2 cut(s) | 1537, 1606 |
| BclI | TGATCA | 1 cut(s) | 802 |
| BcnI | CCSGG | 2 cut(s) | 876, 877 |
| BcoDI | GTCTC | 3 cut(s) | 131, 2535, 3085 |
| BfaI | CTAG | 7 cut(s) | 264, 638, 719, 1173, 1544, 2657, 2853 |
| BfmI | CTRYAG | 1 cut(s) | 2466 |
| BfoI | RGCGCY | 1 cut(s) | 2924 |
| BfrI | CTTAAG | 1 cut(s) | 2170 |
| BfuI | GTATCC | 2 cut(s) | 1537, 1606 |
| BisI | GCNGC | 6 cut(s) | 313, 886, 1177, 2794, 2999, 3204 |
| BlsI | GCNGC | 6 cut(s) | 314, 887, 1178, 2795, 3000, 3205 |
| Bme1390I | CCNGG | 2 cut(s) | 876, 877 |
| Bme18I | GGWCC | 2 cut(s) | 590, 2821 |
| BmeT110I | CYCGRG | 1 cut(s) | 875 |
| BmgBI | CACGTC | 1 cut(s) | 253 |
| BmgT120I | GGNCC | 3 cut(s) | 305, 590, 2821 |
| BmiI | GGNNCC | 1 cut(s) | 2370 |
| BmrFI | CCNGG | 2 cut(s) | 876, 877 |
| BmrI | ACTGGG | 1 cut(s) | 3207 |
| BmsI | GCATC | 4 cut(s) | 207, 804, 2587, 2927 |
| BmuI | ACTGGG | 1 cut(s) | 3207 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3071 |
| BpiI | GAAGAC | 2 cut(s) | 3023, 3071 |
| BpmI | CTGGAG | 2 cut(s) | 1080, 3176 |
| BpuMI | CCSGG | 2 cut(s) | 876, 877 |
| BsaHI | GRCGYC | 1 cut(s) | 3206 |
| BsaJI | CCNNGG | 5 cut(s) | 496, 875, 968, 2620, 3097 |
| BsaWI | WCCGGW | 1 cut(s) | 3106 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1498, 1567, 2119, 2679, 2916 |
| Bse118I | RCCGGY | 1 cut(s) | 2354 |
| Bse1I | ACTGG | 5 cut(s) | 25, 1084, 2640, 3159, 3213 |
| Bse21I | CCTNAGG | 1 cut(s) | 594 |
| Bse3DI | GCAATG | 1 cut(s) | 2419 |
| BseAI | TCCGGA | 1 cut(s) | 3106 |
| BseDI | CCNNGG | 5 cut(s) | 496, 875, 968, 2620, 3097 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1498, 1567, 2119, 2679, 2916 |
| BseMI | GCAATG | 1 cut(s) | 2419 |
| BseMII | CTCAG | 1 cut(s) | 608 |
| BseNI | ACTGG | 5 cut(s) | 25, 1084, 2640, 3159, 3213 |
| BseRI | GAGGAG | 2 cut(s) | 569, 3173 |
| BseSI | GKGCMC | 1 cut(s) | 180 |
| BseXI | GCAGC | 4 cut(s) | 324, 897, 1163, 2780 |
| BseYI | CCCAGC | 2 cut(s) | 2605, 2982 |
| Bsh1236I | CGCG | 1 cut(s) | 310 |
| BshFI | GGCC | 2 cut(s) | 306, 501 |
| BsiHKAI | GWGCWC | 2 cut(s) | 180, 1164 |
| BsiHKCI | CYCGRG | 1 cut(s) | 875 |
| BsiSI | CCGG | 3 cut(s) | 876, 2355, 3107 |
| BslFI | GGGAC | 3 cut(s) | 31, 1733, 3201 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1498, 1567, 2119, 2679, 2916 |
| BsmAI | GTCTC | 3 cut(s) | 131, 2535, 3085 |
| BsmBI | CGTCTC | 1 cut(s) | 131 |
| BsmFI | GGGAC | 3 cut(s) | 31, 1733, 3201 |
| BsmI | GAATGC | 4 cut(s) | 431, 957, 1000, 2771 |
| BsnI | GGCC | 2 cut(s) | 306, 501 |
| BsoBI | CYCGRG | 1 cut(s) | 875 |
| Bsp1286I | GDGCHC | 2 cut(s) | 180, 1164 |
| Bsp13I | TCCGGA | 1 cut(s) | 3106 |
| Bsp1407I | TGTACA | 5 cut(s) | 1316, 1454, 1799, 1868, 2006 |
| Bsp143I | GATC | 7 cut(s) | 110, 397, 802, 2285, 2548, 2755, 3127 |
| BspACI | CCGC | 4 cut(s) | 308, 2244, 2998, 3203 |
| BspANI | GGCC | 2 cut(s) | 306, 501 |
| BspCNI | CTCAG | 1 cut(s) | 607 |
| BspEI | TCCGGA | 1 cut(s) | 3106 |
| BspFNI | CGCG | 1 cut(s) | 310 |
| BspHI | TCATGA | 1 cut(s) | 358 |
| BspLI | GGNNCC | 1 cut(s) | 2370 |
| BspPI | GGATC | 3 cut(s) | 2280, 2556, 2763 |
| BspTI | CTTAAG | 1 cut(s) | 2170 |
| BsrBI | CCGCTC | 2 cut(s) | 2244, 2998 |
| BsrDI | GCAATG | 1 cut(s) | 2419 |
| BsrFI | RCCGGY | 1 cut(s) | 2354 |
| BsrGI | TGTACA | 5 cut(s) | 1316, 1454, 1799, 1868, 2006 |
| BsrI | ACTGG | 5 cut(s) | 25, 1084, 2640, 3159, 3213 |
| BssAI | RCCGGY | 1 cut(s) | 2354 |
| BssECI | CCNNGG | 5 cut(s) | 496, 875, 968, 2620, 3097 |
| BssMI | GATC | 7 cut(s) | 110, 397, 802, 2285, 2548, 2755, 3127 |
| BssNI | GRCGYC | 1 cut(s) | 3206 |
| BssT1I | CCWWGG | 2 cut(s) | 496, 2620 |
| Bst4CI | ACNGT | 5 cut(s) | 92, 182, 2751, 3083, 3193 |
| BstACI | GRCGYC | 1 cut(s) | 3206 |
| BstAFI | CTTAAG | 1 cut(s) | 2170 |
| BstAUI | TGTACA | 5 cut(s) | 1316, 1454, 1799, 1868, 2006 |
| BstC8I | GCNNGC | 7 cut(s) | 308, 425, 429, 676, 727, 2495, 3040 |
| BstDEI | CTNAG | 9 cut(s) | 97, 280, 523, 594, 623, 1025, 2359, 2552, 2759 |
| BstDSI | CCRYGG | 1 cut(s) | 968 |
| BstFNI | CGCG | 1 cut(s) | 310 |
| BstH2I | RGCGCY | 1 cut(s) | 2924 |
| BstHHI | GCGC | 2 cut(s) | 312, 2923 |
| BstKTI | GATC | 7 cut(s) | 113, 400, 805, 2288, 2551, 2758, 3130 |
| BstMAI | GTCTC | 3 cut(s) | 131, 2535, 3085 |
| BstMBI | GATC | 7 cut(s) | 110, 397, 802, 2285, 2548, 2755, 3127 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 139, 312, 2602 |
| BstNSI | RCATGY | 3 cut(s) | 431, 482, 1230 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3071 |
| BstSCI | CCNGG | 2 cut(s) | 874, 875 |
| BstSFI | CTRYAG | 1 cut(s) | 2466 |
| BstSLI | GKGCMC | 1 cut(s) | 180 |
| BstUI | CGCG | 1 cut(s) | 310 |
| BstV1I | GCAGC | 4 cut(s) | 324, 897, 1163, 2780 |
| BstV2I | GAAGAC | 2 cut(s) | 3023, 3071 |
| BstX2I | RGATCY | 3 cut(s) | 2285, 2548, 2755 |
| BstYI | RGATCY | 3 cut(s) | 2285, 2548, 2755 |
| Bsu36I | CCTNAGG | 1 cut(s) | 594 |
| BsuI | GTATCC | 2 cut(s) | 1537, 1606 |
| BsuRI | GGCC | 2 cut(s) | 306, 501 |
| BtgI | CCRYGG | 1 cut(s) | 968 |
| BtrI | CACGTC | 1 cut(s) | 253 |
| BtsI | GCAGTG | 2 cut(s) | 1127, 2704 |
| BtsIMutI | CAGTG | 4 cut(s) | 187, 1127, 2704, 3152 |
| Cac8I | GCNNGC | 7 cut(s) | 308, 425, 429, 676, 727, 2495, 3040 |
| CciI | TCATGA | 1 cut(s) | 358 |
| CfoI | GCGC | 2 cut(s) | 312, 2923 |
| Cfr10I | RCCGGY | 1 cut(s) | 2354 |
| Cfr13I | GGNCC | 3 cut(s) | 305, 590, 2821 |
| Cfr9I | CCCGGG | 1 cut(s) | 875 |
| CseI | GACGC | 2 cut(s) | 148, 3195 |
| Csp6I | GTAC | 7 cut(s) | 939, 1317, 1455, 1800, 1869, 2007, 2352 |
| CviAII | CATG | 9 cut(s) | 359, 404, 428, 479, 704, 818, 1227, 2138, 3221 |
| CviQI | GTAC | 7 cut(s) | 939, 1317, 1455, 1800, 1869, 2007, 2352 |
| DdeI | CTNAG | 9 cut(s) | 97, 280, 523, 594, 623, 1025, 2359, 2552, 2759 |
| DpnI | GATC | 7 cut(s) | 112, 399, 804, 2287, 2550, 2757, 3129 |
| DpnII | GATC | 7 cut(s) | 110, 397, 802, 2285, 2548, 2755, 3127 |
| DraI | TTTAAA | 2 cut(s) | 651, 685 |
| Ecl136II | GAGCTC | 1 cut(s) | 1162 |
| Eco130I | CCWWGG | 2 cut(s) | 496, 2620 |
| Eco147I | AGGCCT | 1 cut(s) | 501 |
| Eco24I | GRGCYC | 1 cut(s) | 1164 |
| Eco47I | GGWCC | 2 cut(s) | 590, 2821 |
| Eco53kI | GAGCTC | 1 cut(s) | 1162 |
| Eco81I | CCTNAGG | 1 cut(s) | 594 |
| Eco88I | CYCGRG | 1 cut(s) | 875 |
| EcoICRI | GAGCTC | 1 cut(s) | 1162 |
| EcoO109I | RGGNCCY | 1 cut(s) | 590 |
| EcoRI | GAATTC | 2 cut(s) | 1883, 3102 |
| EcoT14I | CCWWGG | 2 cut(s) | 496, 2620 |
| EcoT22I | ATGCAT | 2 cut(s) | 433, 819 |
| EcoT38I | GRGCYC | 1 cut(s) | 1164 |
| ErhI | CCWWGG | 2 cut(s) | 496, 2620 |
| Esp3I | CGTCTC | 1 cut(s) | 131 |
| FaeI | CATG | 9 cut(s) | 362, 407, 431, 482, 707, 821, 1230, 2141, 3224 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 126, 158, 2545, 2577 |
| FaqI | GGGAC | 3 cut(s) | 31, 1733, 3201 |
| FatI | CATG | 9 cut(s) | 358, 403, 427, 478, 703, 817, 1226, 2137, 3220 |
| FauI | CCCGC | 1 cut(s) | 315 |
| FauNDI | CATATG | 1 cut(s) | 11 |
| FbaI | TGATCA | 1 cut(s) | 802 |
| FblI | GTMKAC | 1 cut(s) | 912 |
| Fnu4HI | GCNGC | 6 cut(s) | 313, 886, 1177, 2794, 2999, 3204 |
| FriOI | GRGCYC | 1 cut(s) | 1164 |
| Fsp4HI | GCNGC | 6 cut(s) | 313, 886, 1177, 2794, 2999, 3204 |
| FspBI | CTAG | 7 cut(s) | 264, 638, 719, 1173, 1544, 2657, 2853 |
| GlaI | GCGC | 2 cut(s) | 311, 2922 |
| GluI | GCNGC | 6 cut(s) | 313, 886, 1177, 2794, 2999, 3204 |
| GsaI | CCCAGC | 2 cut(s) | 2609, 2986 |
| GsuI | CTGGAG | 2 cut(s) | 1080, 3176 |
| HaeII | RGCGCY | 1 cut(s) | 2924 |
| HaeIII | GGCC | 2 cut(s) | 306, 501 |
| HapII | CCGG | 3 cut(s) | 876, 2355, 3107 |
| HgaI | GACGC | 2 cut(s) | 148, 3195 |
| HhaI | GCGC | 2 cut(s) | 312, 2923 |
| Hin1I | GRCGYC | 1 cut(s) | 3206 |
| Hin1II | CATG | 9 cut(s) | 362, 407, 431, 482, 707, 821, 1230, 2141, 3224 |
| Hin6I | GCGC | 2 cut(s) | 310, 2921 |
| HinP1I | GCGC | 2 cut(s) | 310, 2921 |
| HincII | GTYRAC | 1 cut(s) | 2416 |
| HindII | GTYRAC | 1 cut(s) | 2416 |
| HindIII | AAGCTT | 3 cut(s) | 723, 1003, 2495 |
| HpaII | CCGG | 3 cut(s) | 876, 2355, 3107 |
| HphI | GGTGA | 4 cut(s) | 701, 760, 855, 3037 |
| Hpy166II | GTNNAC | 3 cut(s) | 178, 913, 2416 |
| Hpy188I | TCNGA | 7 cut(s) | 700, 1012, 1135, 1187, 2512, 2953, 3098 |
| Hpy8I | GTNNAC | 3 cut(s) | 178, 913, 2416 |
| Hpy99I | CGWCG | 1 cut(s) | 3211 |
| HpyAV | CCTTC | 5 cut(s) | 77, 166, 185, 512, 2399 |
| HpyCH4III | ACNGT | 5 cut(s) | 92, 182, 2751, 3083, 3193 |
| HpyCH4IV | ACGT | 5 cut(s) | 223, 252, 343, 918, 3123 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 139, 312, 2602 |
| HpyF3I | CTNAG | 9 cut(s) | 97, 280, 523, 594, 623, 1025, 2359, 2552, 2759 |
| HpySE526I | ACGT | 5 cut(s) | 223, 252, 343, 918, 3123 |
| Hsp92I | GRCGYC | 1 cut(s) | 3206 |
| Hsp92II | CATG | 9 cut(s) | 362, 407, 431, 482, 707, 821, 1230, 2141, 3224 |
| HspAI | GCGC | 2 cut(s) | 310, 2921 |
| Kpn2I | TCCGGA | 1 cut(s) | 3106 |
| Ksp22I | TGATCA | 1 cut(s) | 802 |
| Kzo9I | GATC | 7 cut(s) | 110, 397, 802, 2285, 2548, 2755, 3127 |
| LmnI | GCTCC | 2 cut(s) | 1159, 3109 |
| Lsp1109I | GCAGC | 4 cut(s) | 324, 897, 1163, 2780 |
| LweI | GCATC | 4 cut(s) | 207, 804, 2587, 2927 |
| MaeI | CTAG | 7 cut(s) | 264, 638, 719, 1173, 1544, 2657, 2853 |
| MaeII | ACGT | 5 cut(s) | 223, 252, 343, 918, 3123 |
| MaeIII | GTNAC | 7 cut(s) | 86, 861, 2213, 2401, 2699, 2834, 2913 |
| MalI | GATC | 7 cut(s) | 112, 399, 804, 2287, 2550, 2757, 3129 |
| MbiI | CCGCTC | 2 cut(s) | 2244, 2998 |
| MboI | GATC | 7 cut(s) | 110, 397, 802, 2285, 2548, 2755, 3127 |
| MboII | GAAGA | 8 cut(s) | 842, 914, 917, 1030, 1118, 2513, 3023, 3076 |
| MfeI | CAATTG | 2 cut(s) | 42, 128 |
| MflI | RGATCY | 3 cut(s) | 2285, 2548, 2755 |
| MhlI | GDGCHC | 2 cut(s) | 180, 1164 |
| MlyI | GAGTC | 7 cut(s) | 204, 869, 2210, 2678, 2729, 2965, 3087 |
| Mph1103I | ATGCAT | 2 cut(s) | 433, 819 |
| MroI | TCCGGA | 1 cut(s) | 3106 |
| MroXI | GAANNNNTTC | 1 cut(s) | 660 |
| MspCI | CTTAAG | 1 cut(s) | 2170 |
| MspI | CCGG | 3 cut(s) | 876, 2355, 3107 |
| MspR9I | CCNGG | 2 cut(s) | 876, 877 |
| MunI | CAATTG | 2 cut(s) | 42, 128 |
| Mva1269I | GAATGC | 4 cut(s) | 431, 957, 1000, 2771 |
| MvnI | CGCG | 1 cut(s) | 310 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 139, 312, 2602 |
| NciI | CCSGG | 2 cut(s) | 876, 877 |
| NdeI | CATATG | 1 cut(s) | 11 |
| NdeII | GATC | 7 cut(s) | 110, 397, 802, 2285, 2548, 2755, 3127 |
| NlaIII | CATG | 9 cut(s) | 362, 407, 431, 482, 707, 821, 1230, 2141, 3224 |
| NlaIV | GGNNCC | 1 cut(s) | 2370 |
| NmuCI | GTSAC | 3 cut(s) | 861, 2213, 2699 |
| NsiI | ATGCAT | 2 cut(s) | 433, 819 |
| NspI | RCATGY | 3 cut(s) | 431, 482, 1230 |
| PaeI | GCATGC | 1 cut(s) | 431 |
| PagI | TCATGA | 1 cut(s) | 358 |
| PceI | AGGCCT | 1 cut(s) | 501 |
| PciI | ACATGT | 2 cut(s) | 478, 1226 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3181 |
| PctI | GAATGC | 4 cut(s) | 431, 957, 1000, 2771 |
| PdmI | GAANNNNTTC | 1 cut(s) | 660 |
| PkrI | GCNGC | 6 cut(s) | 314, 887, 1178, 2795, 3000, 3205 |
| PleI | GAGTC | 7 cut(s) | 203, 868, 2210, 2677, 2728, 2965, 3087 |
| PpsI | GAGTC | 7 cut(s) | 203, 868, 2210, 2677, 2728, 2965, 3087 |
| PpuMI | RGGWCCY | 1 cut(s) | 590 |
| PscI | ACATGT | 2 cut(s) | 478, 1226 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3071 |
| Psp124BI | GAGCTC | 1 cut(s) | 1164 |
| Psp1406I | AACGTT | 2 cut(s) | 343, 3123 |
| Psp5II | RGGWCCY | 1 cut(s) | 590 |
| PspFI | CCCAGC | 2 cut(s) | 2605, 2982 |
| PspN4I | GGNNCC | 1 cut(s) | 2370 |
| PspPI | GGNCC | 3 cut(s) | 305, 590, 2821 |
| PspPPI | RGGWCCY | 1 cut(s) | 590 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 903, 935 |
| PsuI | RGATCY | 3 cut(s) | 2285, 2548, 2755 |
| RsaI | GTAC | 7 cut(s) | 940, 1318, 1456, 1801, 1870, 2008, 2353 |
| RsaNI | GTAC | 7 cut(s) | 939, 1317, 1455, 1800, 1869, 2007, 2352 |
| SacI | GAGCTC | 1 cut(s) | 1164 |
| SatI | GCNGC | 6 cut(s) | 313, 886, 1177, 2794, 2999, 3204 |
| Sau3AI | GATC | 7 cut(s) | 110, 397, 802, 2285, 2548, 2755, 3127 |
| Sau96I | GGNCC | 3 cut(s) | 305, 590, 2821 |
| SchI | GAGTC | 7 cut(s) | 204, 869, 2210, 2678, 2729, 2965, 3087 |
| ScrFI | CCNGG | 2 cut(s) | 876, 877 |
| SduI | GDGCHC | 2 cut(s) | 180, 1164 |
| SfaNI | GCATC | 4 cut(s) | 207, 804, 2587, 2927 |
| SfcI | CTRYAG | 1 cut(s) | 2466 |
| SinI | GGWCC | 2 cut(s) | 590, 2821 |
| SmaI | CCCGGG | 1 cut(s) | 877 |
| SphI | GCATGC | 1 cut(s) | 431 |
| SseBI | AGGCCT | 1 cut(s) | 501 |
| SsiI | CCGC | 4 cut(s) | 308, 2244, 2998, 3203 |
| SspMI | CTAG | 7 cut(s) | 264, 638, 719, 1173, 1544, 2657, 2853 |
| SstI | GAGCTC | 1 cut(s) | 1164 |
| StuI | AGGCCT | 1 cut(s) | 501 |
| StyD4I | CCNGG | 2 cut(s) | 874, 875 |
| StyI | CCWWGG | 2 cut(s) | 496, 2620 |
| TaaI | ACNGT | 5 cut(s) | 92, 182, 2751, 3083, 3193 |
| TaiI | ACGT | 5 cut(s) | 226, 255, 346, 921, 3126 |
| TaqI | TCGA | 2 cut(s) | 1098, 2383 |
| TatI | WGTACW | 5 cut(s) | 1316, 1454, 1799, 1868, 2006 |
| TauI | GCSGC | 2 cut(s) | 3001, 3206 |
| TscAI | CASTG | 4 cut(s) | 187, 1127, 2704, 3159 |
| TseFI | GTSAC | 3 cut(s) | 861, 2213, 2699 |
| TseI | GCWGC | 4 cut(s) | 312, 885, 1176, 2793 |
| Tsp45I | GTSAC | 3 cut(s) | 861, 2213, 2699 |
| TspDTI | ATGAA | 8 cut(s) | 204, 375, 384, 459, 885, 1031, 1247, 2381 |
| TspGWI | ACGGA | 6 cut(s) | 495, 1104, 1381, 2571, 2834, 3190 |
| TspMI | CCCGGG | 1 cut(s) | 875 |
| TspRI | CASTG | 4 cut(s) | 187, 1127, 2704, 3159 |
| Vha464I | CTTAAG | 1 cut(s) | 2170 |
| VneI | GTGCAC | 1 cut(s) | 176 |
| VpaK11BI | GGWCC | 2 cut(s) | 590, 2821 |
| XceI | RCATGY | 3 cut(s) | 431, 482, 1230 |
| XmaI | CCCGGG | 1 cut(s) | 875 |
| XmiI | GTMKAC | 1 cut(s) | 912 |
| XmnI | GAANNNNTTC | 1 cut(s) | 660 |
| XspI | CTAG | 7 cut(s) | 264, 638, 719, 1173, 1544, 2657, 2853 |
| Zsp2I | ATGCAT | 2 cut(s) | 433, 819 |