TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| C-JID | PF20160 | 69 - 208 | 7.7e-06 | C-JID domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 735 |
| AccB1I | GGYRCC | 1 cut(s) | 735 |
| AccIII | TCCGGA | 1 cut(s) | 149 |
| AciI | CCGC | 1 cut(s) | 409 |
| AclWI | GGATC | 2 cut(s) | 251, 702 |
| AcsI | RAATTY | 2 cut(s) | 295, 310 |
| AfaI | GTAC | 4 cut(s) | 85, 204, 617, 737 |
| AgsI | TTSAA | 6 cut(s) | 113, 235, 341, 592, 665, 710 |
| AjnI | CCWGG | 1 cut(s) | 208 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 302, 334 |
| AluBI | AGCT | 1 cut(s) | 610 |
| AluI | AGCT | 1 cut(s) | 610 |
| Alw26I | GTCTC | 1 cut(s) | 52 |
| AlwI | GGATC | 2 cut(s) | 251, 702 |
| Aor13HI | TCCGGA | 1 cut(s) | 149 |
| ApeKI | GCWGC | 1 cut(s) | 481 |
| ApoI | RAATTY | 2 cut(s) | 295, 310 |
| AseI | ATTAAT | 1 cut(s) | 414 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 310, 705 |
| Asp718I | GGTACC | 1 cut(s) | 735 |
| AspLEI | GCGC | 1 cut(s) | 756 |
| AspS9I | GGNCC | 1 cut(s) | 20 |
| AsuC2I | CCSGG | 1 cut(s) | 462 |
| AvaII | GGWCC | 1 cut(s) | 20 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 75, 108 |
| BanI | GGYRCC | 1 cut(s) | 735 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 167, 199 |
| BbvI | GCAGC | 1 cut(s) | 493 |
| BccI | CCATC | 4 cut(s) | 121, 164, 344, 580 |
| BceAI | ACGGC | 1 cut(s) | 50 |
| BciT130I | CCWGG | 1 cut(s) | 210 |
| BclI | TGATCA | 2 cut(s) | 643, 790 |
| BcnI | CCSGG | 1 cut(s) | 462 |
| BcoDI | GTCTC | 1 cut(s) | 52 |
| BfaI | CTAG | 3 cut(s) | 143, 404, 611 |
| BglII | AGATCT | 1 cut(s) | 658 |
| BisI | GCNGC | 1 cut(s) | 482 |
| BlsI | GCNGC | 1 cut(s) | 483 |
| Bme1390I | CCNGG | 2 cut(s) | 210, 462 |
| Bme18I | GGWCC | 1 cut(s) | 20 |
| BmgT120I | GGNCC | 1 cut(s) | 20 |
| BmiI | GGNNCC | 2 cut(s) | 737, 763 |
| BmrFI | CCNGG | 2 cut(s) | 210, 462 |
| BmsI | GCATC | 2 cut(s) | 155, 256 |
| BpuMI | CCSGG | 1 cut(s) | 462 |
| BsaI | GGTCTC | 1 cut(s) | 52 |
| BsaJI | CCNNGG | 4 cut(s) | 162, 461, 757, 765 |
| BsaWI | WCCGGW | 2 cut(s) | 149, 621 |
| Bse1I | ACTGG | 1 cut(s) | 22 |
| BseAI | TCCGGA | 1 cut(s) | 149 |
| BseBI | CCWGG | 1 cut(s) | 210 |
| BseDI | CCNNGG | 4 cut(s) | 162, 461, 757, 765 |
| BseGI | GGATG | 3 cut(s) | 16, 146, 247 |
| BseMII | CTCAG | 1 cut(s) | 252 |
| BseNI | ACTGG | 1 cut(s) | 22 |
| BseXI | GCAGC | 1 cut(s) | 493 |
| BsgI | GTGCAG | 1 cut(s) | 122 |
| BshNI | GGYRCC | 1 cut(s) | 735 |
| BsiSI | CCGG | 3 cut(s) | 150, 461, 622 |
| BsmAI | GTCTC | 1 cut(s) | 52 |
| Bso31I | GGTCTC | 1 cut(s) | 52 |
| Bsp13I | TCCGGA | 1 cut(s) | 149 |
| Bsp143I | GATC | 6 cut(s) | 256, 643, 658, 694, 719, 790 |
| BspACI | CCGC | 1 cut(s) | 409 |
| BspCNI | CTCAG | 1 cut(s) | 253 |
| BspEI | TCCGGA | 1 cut(s) | 149 |
| BspHI | TCATGA | 2 cut(s) | 439, 697 |
| BspLI | GGNNCC | 2 cut(s) | 737, 763 |
| BspPI | GGATC | 2 cut(s) | 251, 702 |
| BspQI | GCTCTTC | 1 cut(s) | 528 |
| BspT107I | GGYRCC | 1 cut(s) | 735 |
| BspTNI | GGTCTC | 1 cut(s) | 52 |
| BsrI | ACTGG | 1 cut(s) | 22 |
| BssECI | CCNNGG | 4 cut(s) | 162, 461, 757, 765 |
| BssMI | GATC | 6 cut(s) | 256, 643, 658, 694, 719, 790 |
| BssT1I | CCWWGG | 3 cut(s) | 162, 757, 765 |
| Bst2UI | CCWGG | 1 cut(s) | 210 |
| Bst6I | CTCTTC | 1 cut(s) | 528 |
| BstC8I | GCNNGC | 1 cut(s) | 105 |
| BstDEI | CTNAG | 1 cut(s) | 261 |
| BstF5I | GGATG | 3 cut(s) | 16, 146, 247 |
| BstHHI | GCGC | 1 cut(s) | 756 |
| BstKTI | GATC | 6 cut(s) | 259, 646, 661, 697, 722, 793 |
| BstMAI | GTCTC | 1 cut(s) | 52 |
| BstMBI | GATC | 6 cut(s) | 256, 643, 658, 694, 719, 790 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 329 |
| BstNI | CCWGG | 1 cut(s) | 210 |
| BstSCI | CCNGG | 2 cut(s) | 208, 460 |
| BstV1I | GCAGC | 1 cut(s) | 493 |
| BstX2I | RGATCY | 1 cut(s) | 658 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 30 |
| BstYI | RGATCY | 1 cut(s) | 658 |
| BtsCI | GGATG | 3 cut(s) | 16, 146, 247 |
| BtsI | GCAGTG | 1 cut(s) | 530 |
| BtsIMutI | CAGTG | 3 cut(s) | 15, 307, 530 |
| Cac8I | GCNNGC | 1 cut(s) | 105 |
| CciI | TCATGA | 2 cut(s) | 439, 697 |
| CfoI | GCGC | 1 cut(s) | 756 |
| Cfr13I | GGNCC | 1 cut(s) | 20 |
| Csp6I | GTAC | 4 cut(s) | 84, 203, 616, 736 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 43, 78, 570, 605 |
| CviAII | CATG | 4 cut(s) | 398, 440, 473, 698 |
| CviJI | RGCY | 6 cut(s) | 107, 161, 323, 332, 610, 764 |
| CviKI_1 | RGCY | 6 cut(s) | 107, 161, 323, 332, 610, 764 |
| CviQI | GTAC | 4 cut(s) | 84, 203, 616, 736 |
| DdeI | CTNAG | 1 cut(s) | 261 |
| DpnI | GATC | 6 cut(s) | 258, 645, 660, 696, 721, 792 |
| DpnII | GATC | 6 cut(s) | 256, 643, 658, 694, 719, 790 |
| Eam1104I | CTCTTC | 1 cut(s) | 528 |
| EarI | CTCTTC | 1 cut(s) | 528 |
| Eco130I | CCWWGG | 3 cut(s) | 162, 757, 765 |
| Eco31I | GGTCTC | 1 cut(s) | 52 |
| Eco47I | GGWCC | 1 cut(s) | 20 |
| EcoRI | GAATTC | 1 cut(s) | 310 |
| EcoRII | CCWGG | 1 cut(s) | 208 |
| EcoT14I | CCWWGG | 3 cut(s) | 162, 757, 765 |
| ErhI | CCWWGG | 3 cut(s) | 162, 757, 765 |
| FaeI | CATG | 4 cut(s) | 401, 443, 476, 701 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 525, 557 |
| FatI | CATG | 4 cut(s) | 397, 439, 472, 697 |
| FbaI | TGATCA | 2 cut(s) | 643, 790 |
| Fnu4HI | GCNGC | 1 cut(s) | 482 |
| FokI | GGATG | 3 cut(s) | 23, 133, 234 |
| Fsp4HI | GCNGC | 1 cut(s) | 482 |
| FspBI | CTAG | 3 cut(s) | 143, 404, 611 |
| GlaI | GCGC | 1 cut(s) | 755 |
| GluI | GCNGC | 1 cut(s) | 482 |
| HapII | CCGG | 3 cut(s) | 150, 461, 622 |
| HhaI | GCGC | 1 cut(s) | 756 |
| Hin1II | CATG | 4 cut(s) | 401, 443, 476, 701 |
| Hin6I | GCGC | 1 cut(s) | 754 |
| HinP1I | GCGC | 1 cut(s) | 754 |
| HinfI | GANTC | 3 cut(s) | 179, 220, 603 |
| HpaII | CCGG | 3 cut(s) | 150, 461, 622 |
| Hpy166II | GTNNAC | 1 cut(s) | 616 |
| Hpy188I | TCNGA | 1 cut(s) | 502 |
| Hpy188III | TCNNGA | 6 cut(s) | 150, 260, 315, 440, 698, 794 |
| Hpy8I | GTNNAC | 1 cut(s) | 616 |
| HpyAV | CCTTC | 2 cut(s) | 104, 169 |
| HpyCH4IV | ACGT | 1 cut(s) | 724 |
| HpyCH4V | TGCA | 1 cut(s) | 103 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 329 |
| HpyF3I | CTNAG | 1 cut(s) | 261 |
| HpySE526I | ACGT | 1 cut(s) | 724 |
| Hsp92II | CATG | 4 cut(s) | 401, 443, 476, 701 |
| HspAI | GCGC | 1 cut(s) | 754 |
| Kpn2I | TCCGGA | 1 cut(s) | 149 |
| KpnI | GGTACC | 1 cut(s) | 739 |
| Ksp22I | TGATCA | 2 cut(s) | 643, 790 |
| Kzo9I | GATC | 6 cut(s) | 256, 643, 658, 694, 719, 790 |
| LguI | GCTCTTC | 1 cut(s) | 528 |
| LmnI | GCTCC | 1 cut(s) | 761 |
| Lsp1109I | GCAGC | 1 cut(s) | 493 |
| LweI | GCATC | 2 cut(s) | 155, 256 |
| MaeI | CTAG | 3 cut(s) | 143, 404, 611 |
| MaeII | ACGT | 1 cut(s) | 724 |
| MaeIII | GTNAC | 1 cut(s) | 13 |
| MalI | GATC | 6 cut(s) | 258, 645, 660, 696, 721, 792 |
| MboI | GATC | 6 cut(s) | 256, 643, 658, 694, 719, 790 |
| MboII | GAAGA | 3 cut(s) | 545, 653, 812 |
| MflI | RGATCY | 1 cut(s) | 658 |
| MluCI | AATT | 7 cut(s) | 265, 295, 310, 665, 679, 730, 813 |
| MlyI | GAGTC | 1 cut(s) | 612 |
| MmeI | TCCRAC | 1 cut(s) | 275 |
| MnlI | CCTC | 5 cut(s) | 150, 300, 501, 513, 750 |
| MroI | TCCGGA | 1 cut(s) | 149 |
| MroXI | GAANNNNTTC | 2 cut(s) | 310, 705 |
| MseI | TTAA | 3 cut(s) | 282, 414, 729 |
| MspI | CCGG | 3 cut(s) | 150, 461, 622 |
| MspR9I | CCNGG | 2 cut(s) | 210, 462 |
| MvaI | CCWGG | 1 cut(s) | 210 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 329 |
| NciI | CCSGG | 1 cut(s) | 462 |
| NdeII | GATC | 6 cut(s) | 256, 643, 658, 694, 719, 790 |
| NlaIII | CATG | 4 cut(s) | 401, 443, 476, 701 |
| NlaIV | GGNNCC | 2 cut(s) | 737, 763 |
| NmuCI | GTSAC | 1 cut(s) | 13 |
| PagI | TCATGA | 2 cut(s) | 439, 697 |
| PciSI | GCTCTTC | 1 cut(s) | 528 |
| PdmI | GAANNNNTTC | 2 cut(s) | 310, 705 |
| PfeI | GAWTC | 2 cut(s) | 179, 220 |
| PfoI | TCCNGGA | 1 cut(s) | 208 |
| PkrI | GCNGC | 1 cut(s) | 483 |
| PleI | GAGTC | 1 cut(s) | 611 |
| PpsI | GAGTC | 1 cut(s) | 611 |
| PshBI | ATTAAT | 1 cut(s) | 414 |
| Psp6I | CCWGG | 1 cut(s) | 208 |
| PspGI | CCWGG | 1 cut(s) | 208 |
| PspN4I | GGNNCC | 2 cut(s) | 737, 763 |
| PspPI | GGNCC | 1 cut(s) | 20 |
| PsuI | RGATCY | 1 cut(s) | 658 |
| RsaI | GTAC | 4 cut(s) | 85, 204, 617, 737 |
| RsaNI | GTAC | 4 cut(s) | 84, 203, 616, 736 |
| SapI | GCTCTTC | 1 cut(s) | 528 |
| SaqAI | TTAA | 3 cut(s) | 282, 414, 729 |
| SatI | GCNGC | 1 cut(s) | 482 |
| Sau3AI | GATC | 6 cut(s) | 256, 643, 658, 694, 719, 790 |
| Sau96I | GGNCC | 1 cut(s) | 20 |
| SchI | GAGTC | 1 cut(s) | 612 |
| ScrFI | CCNGG | 2 cut(s) | 210, 462 |
| SetI | ASST | 4 cut(s) | 142, 365, 612, 727 |
| SfaNI | GCATC | 2 cut(s) | 155, 256 |
| SinI | GGWCC | 1 cut(s) | 20 |
| Sse9I | AATT | 7 cut(s) | 265, 295, 310, 665, 679, 730, 813 |
| SsiI | CCGC | 1 cut(s) | 409 |
| SspMI | CTAG | 3 cut(s) | 143, 404, 611 |
| StyD4I | CCNGG | 2 cut(s) | 208, 460 |
| StyI | CCWWGG | 3 cut(s) | 162, 757, 765 |
| TaiI | ACGT | 1 cut(s) | 727 |
| TaqI | TCGA | 2 cut(s) | 189, 314 |
| TasI | AATT | 7 cut(s) | 265, 295, 310, 665, 679, 730, 813 |
| TatI | WGTACW | 1 cut(s) | 202 |
| TfiI | GAWTC | 2 cut(s) | 179, 220 |
| Tru1I | TTAA | 3 cut(s) | 282, 414, 729 |
| Tru9I | TTAA | 3 cut(s) | 282, 414, 729 |
| TscAI | CASTG | 3 cut(s) | 22, 307, 530 |
| TseFI | GTSAC | 1 cut(s) | 13 |
| TseI | GCWGC | 1 cut(s) | 481 |
| Tsp45I | GTSAC | 1 cut(s) | 13 |
| TspDTI | ATGAA | 6 cut(s) | 171, 386, 396, 428, 546, 714 |
| TspRI | CASTG | 3 cut(s) | 22, 307, 530 |
| VpaK11BI | GGWCC | 1 cut(s) | 20 |
| VspI | ATTAAT | 1 cut(s) | 414 |
| XapI | RAATTY | 2 cut(s) | 295, 310 |
| XmnI | GAANNNNTTC | 2 cut(s) | 310, 705 |
| XspI | CTAG | 3 cut(s) | 143, 404, 611 |