TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 18 - 183 | 4.8e-56 | TIR domain |
| TIR_2 | PF13676 | 21 - 115 | 3.4e-15 | TIR domain |
| NB-ARC | PF00931 | 200 - 362 | 5.1e-21 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 430 - 497 | 1.9e-18 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 681 - 787 | 5.1e-12 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 776 - 857 | 2.4e-16 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 826 - 902 | 1.4e-13 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 852 - 925 | 4.9e-14 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 869 - 948 | 2.6e-14 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 915 - 970 | 4.7e-11 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 920 - 977 | 9.3e-06 | Leucine rich repeat |
| LRR_14 | PF23598 | 970 - 1019 | 9.1e-08 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 1016 - 1056 | 7.8e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 1138 - 1236 | 5.4e-08 | Disease resistance protein RPS4B-like, leucine-rich repeats |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 278 |
| AatII | GACGTC | 1 cut(s) | 1862 |
| Acc36I | ACCTGC | 1 cut(s) | 1506 |
| AccB1I | GGYRCC | 3 cut(s) | 829, 3173, 3291 |
| AccI | GTMKAC | 1 cut(s) | 1090 |
| AccII | CGCG | 2 cut(s) | 2432, 3491 |
| AccIII | TCCGGA | 1 cut(s) | 1910 |
| AciI | CCGC | 3 cut(s) | 455, 2163, 3239 |
| AclI | AACGTT | 1 cut(s) | 1930 |
| AclWI | GGATC | 5 cut(s) | 280, 601, 1284, 1944, 1977 |
| AcoI | YGGCCR | 1 cut(s) | 567 |
| AcuI | CTGAAG | 3 cut(s) | 1623, 2060, 3108 |
| AcvI | CACGTG | 1 cut(s) | 1342 |
| AcyI | GRCGYC | 2 cut(s) | 1859, 3430 |
| AdeI | CACNNNGTG | 1 cut(s) | 1285 |
| AfaI | GTAC | 5 cut(s) | 116, 553, 575, 1567, 1633 |
| AfeI | AGCGCT | 1 cut(s) | 121 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 48, 261, 1100, 3426 |
| AflIII | ACRYGT | 7 cut(s) | 89, 1339, 2430, 2568, 2844, 3051, 3777 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3490 |
| AhlI | ACTAGT | 1 cut(s) | 3301 |
| AjiI | CACGTC | 2 cut(s) | 907, 3052 |
| AjnI | CCWGG | 3 cut(s) | 426, 1029, 1501 |
| Alw21I | GWGCWC | 2 cut(s) | 1395, 2124 |
| Alw26I | GTCTC | 3 cut(s) | 1903, 2027, 3466 |
| Alw44I | GTGCAC | 1 cut(s) | 2120 |
| AlwI | GGATC | 5 cut(s) | 280, 601, 1284, 1944, 1977 |
| Ama87I | CYCGRG | 1 cut(s) | 290 |
| Aor13HI | TCCGGA | 1 cut(s) | 1910 |
| Aor51HI | AGCGCT | 1 cut(s) | 121 |
| AoxI | GGCC | 4 cut(s) | 473, 567, 1404, 1736 |
| ApaLI | GTGCAC | 1 cut(s) | 2120 |
| ApeKI | GCWGC | 5 cut(s) | 440, 1211, 1233, 1368, 1597 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 762, 794, 3444, 3476 |
| AseI | ATTAAT | 2 cut(s) | 1386, 1797 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1296, 2868, 3354 |
| AspA2I | CCTAGG | 1 cut(s) | 2024 |
| AspLEI | GCGC | 2 cut(s) | 122, 3491 |
| AspS9I | GGNCC | 2 cut(s) | 424, 1027 |
| AsuC2I | CCSGG | 1 cut(s) | 3714 |
| AsuHPI | GGTGA | 6 cut(s) | 16, 92, 1337, 1482, 2293, 3796 |
| AvaI | CYCGRG | 1 cut(s) | 290 |
| AvaII | GGWCC | 2 cut(s) | 424, 1027 |
| AvrII | CCTAGG | 1 cut(s) | 2024 |
| BaeGI | GKGCMC | 3 cut(s) | 2124, 3178, 3296 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1828, 1861 |
| BalI | TGGCCA | 1 cut(s) | 569 |
| BanI | GGYRCC | 3 cut(s) | 829, 3173, 3291 |
| BanII | GRGCYC | 1 cut(s) | 1395 |
| BauI | CACGAG | 1 cut(s) | 594 |
| BbrPI | CACGTG | 1 cut(s) | 1342 |
| BbsI | GAAGAC | 3 cut(s) | 1139, 3425, 3530 |
| Bbv12I | GWGCWC | 2 cut(s) | 1395, 2124 |
| BbvI | GCAGC | 5 cut(s) | 452, 1198, 1245, 1380, 1584 |
| BciT130I | CCWGG | 3 cut(s) | 428, 1031, 1503 |
| BciVI | GTATCC | 1 cut(s) | 79 |
| BclI | TGATCA | 3 cut(s) | 6, 858, 3394 |
| BcnI | CCSGG | 1 cut(s) | 3714 |
| BcoDI | GTCTC | 3 cut(s) | 1903, 2027, 3466 |
| BcuI | ACTAGT | 1 cut(s) | 3301 |
| BfoI | RGCGCY | 1 cut(s) | 123 |
| BfuAI | ACCTGC | 1 cut(s) | 1506 |
| BfuI | GTATCC | 1 cut(s) | 79 |
| BglII | AGATCT | 1 cut(s) | 2404 |
| BisI | GCNGC | 8 cut(s) | 441, 456, 1212, 1234, 1369, 1598, 2164, 3239 |
| BlnI | CCTAGG | 1 cut(s) | 2024 |
| BlsI | GCNGC | 8 cut(s) | 442, 457, 1213, 1235, 1370, 1599, 2165, 3240 |
| Bme1390I | CCNGG | 4 cut(s) | 428, 1031, 1503, 3714 |
| Bme18I | GGWCC | 2 cut(s) | 424, 1027 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3490 |
| BmeT110I | CYCGRG | 1 cut(s) | 290 |
| BmgBI | CACGTC | 2 cut(s) | 907, 3052 |
| BmgT120I | GGNCC | 2 cut(s) | 424, 1027 |
| BmiI | GGNNCC | 5 cut(s) | 766, 831, 3175, 3293, 3369 |
| BmrFI | CCNGG | 4 cut(s) | 428, 1031, 1503, 3714 |
| BmrI | ACTGGG | 2 cut(s) | 495, 572 |
| BmuI | ACTGGG | 2 cut(s) | 495, 572 |
| BpiI | GAAGAC | 3 cut(s) | 1139, 3425, 3530 |
| BpmI | CTGGAG | 1 cut(s) | 1713 |
| BpuEI | CTTGAG | 5 cut(s) | 1125, 1741, 1973, 2051, 2120 |
| BpuMI | CCSGG | 1 cut(s) | 3714 |
| Bsa29I | ATCGAT | 1 cut(s) | 2258 |
| BsaAI | YACGTR | 3 cut(s) | 92, 573, 1342 |
| BsaBI | GATNNNNATC | 2 cut(s) | 224, 1539 |
| BsaHI | GRCGYC | 2 cut(s) | 1859, 3430 |
| BsaJI | CCNNGG | 8 cut(s) | 47, 1023, 1501, 2024, 2277, 2415, 2622, 2898 |
| BsaWI | WCCGGW | 1 cut(s) | 1910 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2114, 2144 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 48, 261, 1100, 3426 |
| Bse1I | ACTGG | 6 cut(s) | 326, 501, 578, 2292, 3651, 3699 |
| Bse3DI | GCAATG | 2 cut(s) | 1192, 1208 |
| Bse8I | GATNNNNATC | 2 cut(s) | 224, 1539 |
| BseAI | TCCGGA | 1 cut(s) | 1910 |
| BseBI | CCWGG | 3 cut(s) | 428, 1031, 1503 |
| BseCI | ATCGAT | 1 cut(s) | 2258 |
| BseDI | CCNNGG | 8 cut(s) | 47, 1023, 1501, 2024, 2277, 2415, 2622, 2898 |
| BseJI | GATNNNNATC | 2 cut(s) | 224, 1539 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 48, 261, 1100, 3426 |
| BseMI | GCAATG | 2 cut(s) | 1192, 1208 |
| BseMII | CTCAG | 2 cut(s) | 178, 495 |
| BseNI | ACTGG | 6 cut(s) | 326, 501, 578, 2292, 3651, 3699 |
| BseRI | GAGGAG | 2 cut(s) | 186, 1797 |
| BseSI | GKGCMC | 3 cut(s) | 2124, 3178, 3296 |
| BseXI | GCAGC | 5 cut(s) | 452, 1198, 1245, 1380, 1584 |
| BsgI | GTGCAG | 2 cut(s) | 2162, 3366 |
| Bsh1236I | CGCG | 2 cut(s) | 2432, 3491 |
| BshFI | GGCC | 4 cut(s) | 475, 569, 1406, 1738 |
| BshNI | GGYRCC | 3 cut(s) | 829, 3173, 3291 |
| BshVI | ATCGAT | 1 cut(s) | 2258 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1395, 2124 |
| BsiHKCI | CYCGRG | 1 cut(s) | 290 |
| BsiSI | CCGG | 3 cut(s) | 1911, 3542, 3713 |
| BslFI | GGGAC | 3 cut(s) | 1731, 2030, 3729 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 48, 261, 1100, 3426 |
| BsmAI | GTCTC | 3 cut(s) | 1903, 2027, 3466 |
| BsmFI | GGGAC | 3 cut(s) | 1731, 2030, 3729 |
| BsmI | GAATGC | 2 cut(s) | 1078, 3452 |
| BsnI | GGCC | 4 cut(s) | 475, 569, 1406, 1738 |
| BsoBI | CYCGRG | 1 cut(s) | 290 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1395, 2124, 3178, 3296 |
| Bsp13I | TCCGGA | 1 cut(s) | 1910 |
| Bsp1407I | TGTACA | 1 cut(s) | 114 |
| Bsp143I | GATC | 9 cut(s) | 6, 285, 606, 858, 1276, 1936, 1969, 2404, 3394 |
| Bsp19I | CCATGG | 1 cut(s) | 47 |
| BspACI | CCGC | 3 cut(s) | 455, 2163, 3239 |
| BspANI | GGCC | 4 cut(s) | 475, 569, 1406, 1738 |
| BspCNI | CTCAG | 2 cut(s) | 177, 494 |
| BspDI | ATCGAT | 1 cut(s) | 2258 |
| BspEI | TCCGGA | 1 cut(s) | 1910 |
| BspFNI | CGCG | 2 cut(s) | 2432, 3491 |
| BspHI | TCATGA | 5 cut(s) | 397, 511, 712, 1042, 1528 |
| BspLI | GGNNCC | 5 cut(s) | 766, 831, 3175, 3293, 3369 |
| BspMI | ACCTGC | 1 cut(s) | 1506 |
| BspPI | GGATC | 5 cut(s) | 280, 601, 1284, 1944, 1977 |
| BspT107I | GGYRCC | 3 cut(s) | 829, 3173, 3291 |
| BsrDI | GCAATG | 2 cut(s) | 1192, 1208 |
| BsrGI | TGTACA | 1 cut(s) | 114 |
| BsrI | ACTGG | 6 cut(s) | 326, 501, 578, 2292, 3651, 3699 |
| BssECI | CCNNGG | 8 cut(s) | 47, 1023, 1501, 2024, 2277, 2415, 2622, 2898 |
| BssMI | GATC | 9 cut(s) | 6, 285, 606, 858, 1276, 1936, 1969, 2404, 3394 |
| BssNI | GRCGYC | 2 cut(s) | 1859, 3430 |
| BssSI | CACGAG | 1 cut(s) | 594 |
| BssT1I | CCWWGG | 7 cut(s) | 47, 1023, 2024, 2277, 2415, 2622, 2898 |
| Bst2BI | CACGAG | 1 cut(s) | 594 |
| Bst2UI | CCWGG | 3 cut(s) | 428, 1031, 1503 |
| Bst4CI | ACNGT | 9 cut(s) | 213, 823, 1676, 1822, 1949, 3195, 3235, 3245, 3414 |
| Bst6I | CTCTTC | 7 cut(s) | 28, 163, 519, 628, 2483, 2759, 3360 |
| BstACI | GRCGYC | 2 cut(s) | 1859, 3430 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 871 |
| BstAUI | TGTACA | 1 cut(s) | 114 |
| BstBAI | YACGTR | 3 cut(s) | 92, 573, 1342 |
| BstC8I | GCNNGC | 2 cut(s) | 3325, 3547 |
| BstDEI | CTNAG | 5 cut(s) | 164, 481, 934, 1658, 1940 |
| BstDSI | CCRYGG | 1 cut(s) | 47 |
| BstFNI | CGCG | 2 cut(s) | 2432, 3491 |
| BstH2I | RGCGCY | 1 cut(s) | 123 |
| BstHHI | GCGC | 2 cut(s) | 122, 3491 |
| BstKTI | GATC | 9 cut(s) | 9, 288, 609, 861, 1279, 1939, 1972, 2407, 3397 |
| BstMAI | GTCTC | 3 cut(s) | 1903, 2027, 3466 |
| BstMBI | GATC | 9 cut(s) | 6, 285, 606, 858, 1276, 1936, 1969, 2404, 3394 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 871, 3119 |
| BstNI | CCWGG | 3 cut(s) | 428, 1031, 1503 |
| BstNSI | RCATGY | 6 cut(s) | 1314, 1651, 2572, 2848, 3549, 3781 |
| BstSCI | CCNGG | 4 cut(s) | 426, 1029, 1501, 3712 |
| BstSLI | GKGCMC | 3 cut(s) | 2124, 3178, 3296 |
| BstUI | CGCG | 2 cut(s) | 2432, 3491 |
| BstV1I | GCAGC | 5 cut(s) | 452, 1198, 1245, 1380, 1584 |
| BstV2I | GAAGAC | 3 cut(s) | 1139, 3425, 3530 |
| BstX2I | RGATCY | 4 cut(s) | 285, 606, 1936, 2404 |
| BstYI | RGATCY | 4 cut(s) | 285, 606, 1936, 2404 |
| Bsu15I | ATCGAT | 1 cut(s) | 2258 |
| BsuI | GTATCC | 1 cut(s) | 79 |
| BsuRI | GGCC | 4 cut(s) | 475, 569, 1406, 1738 |
| BsuTUI | ATCGAT | 1 cut(s) | 2258 |
| BtgI | CCRYGG | 1 cut(s) | 47 |
| BtgZI | GCGATG | 1 cut(s) | 1291 |
| BtrI | CACGTC | 2 cut(s) | 907, 3052 |
| BtsIMutI | CAGTG | 4 cut(s) | 508, 1945, 3200, 3250 |
| BveI | ACCTGC | 1 cut(s) | 1506 |
| Cac8I | GCNNGC | 2 cut(s) | 3325, 3547 |
| CciI | TCATGA | 5 cut(s) | 397, 511, 712, 1042, 1528 |
| CfoI | GCGC | 2 cut(s) | 122, 3491 |
| Cfr13I | GGNCC | 2 cut(s) | 424, 1027 |
| ClaI | ATCGAT | 1 cut(s) | 2258 |
| CseI | GACGC | 6 cut(s) | 1832, 2421, 2438, 3128, 3419, 3480 |
| Csp6I | GTAC | 5 cut(s) | 115, 552, 574, 1566, 1632 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3167, 3202 |
| CviQI | GTAC | 5 cut(s) | 115, 552, 574, 1566, 1632 |
| DdeI | CTNAG | 5 cut(s) | 164, 481, 934, 1658, 1940 |
| DpnI | GATC | 9 cut(s) | 8, 287, 608, 860, 1278, 1938, 1971, 2406, 3396 |
| DpnII | GATC | 9 cut(s) | 6, 285, 606, 858, 1276, 1936, 1969, 2404, 3394 |
| DraI | TTTAAA | 4 cut(s) | 1081, 1254, 1321, 3204 |
| DraIII | CACNNNGTG | 1 cut(s) | 1285 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 278 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3490 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 278 |
| EaeI | YGGCCR | 1 cut(s) | 567 |
| Eam1104I | CTCTTC | 7 cut(s) | 28, 163, 519, 628, 2483, 2759, 3360 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3490 |
| EarI | CTCTTC | 7 cut(s) | 28, 163, 519, 628, 2483, 2759, 3360 |
| Ecl136II | GAGCTC | 1 cut(s) | 1393 |
| Eco130I | CCWWGG | 7 cut(s) | 47, 1023, 2024, 2277, 2415, 2622, 2898 |
| Eco24I | GRGCYC | 1 cut(s) | 1395 |
| Eco47I | GGWCC | 2 cut(s) | 424, 1027 |
| Eco47III | AGCGCT | 1 cut(s) | 121 |
| Eco53kI | GAGCTC | 1 cut(s) | 1393 |
| Eco57I | CTGAAG | 3 cut(s) | 1623, 2060, 3108 |
| Eco72I | CACGTG | 1 cut(s) | 1342 |
| Eco88I | CYCGRG | 1 cut(s) | 290 |
| EcoICRI | GAGCTC | 1 cut(s) | 1393 |
| EcoRII | CCWGG | 3 cut(s) | 426, 1029, 1501 |
| EcoT14I | CCWWGG | 7 cut(s) | 47, 1023, 2024, 2277, 2415, 2622, 2898 |
| EcoT22I | ATGCAT | 4 cut(s) | 253, 1446, 3115, 3551 |
| EcoT38I | GRGCYC | 1 cut(s) | 1395 |
| ErhI | CCWWGG | 7 cut(s) | 47, 1023, 2024, 2277, 2415, 2622, 2898 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 251, 283, 2326, 2358, 3016, 3048 |
| FaqI | GGGAC | 3 cut(s) | 1731, 2030, 3729 |
| FbaI | TGATCA | 3 cut(s) | 6, 858, 3394 |
| FblI | GTMKAC | 1 cut(s) | 1090 |
| Fnu4HI | GCNGC | 8 cut(s) | 441, 456, 1212, 1234, 1369, 1598, 2164, 3239 |
| FriOI | GRGCYC | 1 cut(s) | 1395 |
| Fsp4HI | GCNGC | 8 cut(s) | 441, 456, 1212, 1234, 1369, 1598, 2164, 3239 |
| GlaI | GCGC | 2 cut(s) | 121, 3490 |
| GluI | GCNGC | 8 cut(s) | 441, 456, 1212, 1234, 1369, 1598, 2164, 3239 |
| GsuI | CTGGAG | 1 cut(s) | 1713 |
| HaeII | RGCGCY | 1 cut(s) | 123 |
| HaeIII | GGCC | 4 cut(s) | 475, 569, 1406, 1738 |
| HapII | CCGG | 3 cut(s) | 1911, 3542, 3713 |
| HgaI | GACGC | 6 cut(s) | 1832, 2421, 2438, 3128, 3419, 3480 |
| HhaI | GCGC | 2 cut(s) | 122, 3491 |
| Hin1I | GRCGYC | 2 cut(s) | 1859, 3430 |
| Hin6I | GCGC | 2 cut(s) | 120, 3489 |
| HinP1I | GCGC | 2 cut(s) | 120, 3489 |
| HincII | GTYRAC | 2 cut(s) | 678, 1091 |
| HindII | GTYRAC | 2 cut(s) | 678, 1091 |
| HindIII | AAGCTT | 3 cut(s) | 614, 1359, 2096 |
| HpaII | CCGG | 3 cut(s) | 1911, 3542, 3713 |
| HphI | GGTGA | 6 cut(s) | 16, 92, 1337, 1482, 2293, 3796 |
| Hpy166II | GTNNAC | 5 cut(s) | 678, 1091, 2122, 3250, 3495 |
| Hpy8I | GTNNAC | 5 cut(s) | 678, 1091, 2122, 3250, 3495 |
| HpyCH4III | ACNGT | 9 cut(s) | 213, 823, 1676, 1822, 1949, 3195, 3235, 3245, 3414 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 871, 3119 |
| HpyF3I | CTNAG | 5 cut(s) | 164, 481, 934, 1658, 1940 |
| Hsp92I | GRCGYC | 2 cut(s) | 1859, 3430 |
| HspAI | GCGC | 2 cut(s) | 120, 3489 |
| Kpn2I | TCCGGA | 1 cut(s) | 1910 |
| Ksp22I | TGATCA | 3 cut(s) | 6, 858, 3394 |
| Kzo9I | GATC | 9 cut(s) | 6, 285, 606, 858, 1276, 1936, 1969, 2404, 3394 |
| LmnI | GCTCC | 3 cut(s) | 1594, 2071, 2422 |
| Lsp1109I | GCAGC | 5 cut(s) | 452, 1198, 1245, 1380, 1584 |
| MaeIII | GTNAC | 9 cut(s) | 92, 107, 815, 1488, 1811, 1943, 3189, 3304, 3605 |
| MalI | GATC | 9 cut(s) | 8, 287, 608, 860, 1278, 1938, 1971, 2406, 3396 |
| MboI | GATC | 9 cut(s) | 6, 285, 606, 858, 1276, 1936, 1969, 2404, 3394 |
| MflI | RGATCY | 4 cut(s) | 285, 606, 1936, 2404 |
| MhlI | GDGCHC | 4 cut(s) | 1395, 2124, 3178, 3296 |
| MlsI | TGGCCA | 1 cut(s) | 569 |
| MluI | ACGCGT | 1 cut(s) | 2430 |
| MluNI | TGGCCA | 1 cut(s) | 569 |
| MlyI | GAGTC | 4 cut(s) | 1819, 2017, 2123, 2285 |
| MmeI | TCCRAC | 8 cut(s) | 1668, 1960, 2036, 2066, 3298, 3395, 3549, 3645 |
| Mox20I | TGGCCA | 1 cut(s) | 569 |
| Mph1103I | ATGCAT | 4 cut(s) | 253, 1446, 3115, 3551 |
| MroI | TCCGGA | 1 cut(s) | 1910 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1296, 2868, 3354 |
| MscI | TGGCCA | 1 cut(s) | 569 |
| MslI | CAYNNNNRTG | 7 cut(s) | 149, 1439, 1533, 1589, 3396, 3776, 3782 |
| Msp20I | TGGCCA | 1 cut(s) | 569 |
| MspI | CCGG | 3 cut(s) | 1911, 3542, 3713 |
| MspR9I | CCNGG | 4 cut(s) | 428, 1031, 1503, 3714 |
| Mva1269I | GAATGC | 2 cut(s) | 1078, 3452 |
| MvaI | CCWGG | 3 cut(s) | 428, 1031, 1503 |
| MvnI | CGCG | 2 cut(s) | 2432, 3491 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 871, 3119 |
| NciI | CCSGG | 1 cut(s) | 3714 |
| NcoI | CCATGG | 1 cut(s) | 47 |
| NdeII | GATC | 9 cut(s) | 6, 285, 606, 858, 1276, 1936, 1969, 2404, 3394 |
| NlaIV | GGNNCC | 5 cut(s) | 766, 831, 3175, 3293, 3369 |
| NmuCI | GTSAC | 7 cut(s) | 107, 1488, 1811, 1943, 3189, 3304, 3605 |
| NsiI | ATGCAT | 4 cut(s) | 253, 1446, 3115, 3551 |
| NspI | RCATGY | 6 cut(s) | 1314, 1651, 2572, 2848, 3549, 3781 |
| PaeI | GCATGC | 1 cut(s) | 3549 |
| PaeR7I | CTCGAG | 1 cut(s) | 290 |
| PagI | TCATGA | 5 cut(s) | 397, 511, 712, 1042, 1528 |
| PciI | ACATGT | 3 cut(s) | 2568, 2844, 3777 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1840 |
| PctI | GAATGC | 2 cut(s) | 1078, 3452 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1296, 2868, 3354 |
| PfoI | TCCNGGA | 3 cut(s) | 426, 1029, 3712 |
| PkrI | GCNGC | 8 cut(s) | 442, 457, 1213, 1235, 1370, 1599, 2165, 3240 |
| PleI | GAGTC | 4 cut(s) | 1818, 2016, 2123, 2285 |
| PmaCI | CACGTG | 1 cut(s) | 1342 |
| PmlI | CACGTG | 1 cut(s) | 1342 |
| PpsI | GAGTC | 4 cut(s) | 1818, 2016, 2123, 2285 |
| Ppu21I | YACGTR | 3 cut(s) | 92, 573, 1342 |
| PscI | ACATGT | 3 cut(s) | 2568, 2844, 3777 |
| PshBI | ATTAAT | 2 cut(s) | 1386, 1797 |
| Psp124BI | GAGCTC | 1 cut(s) | 1395 |
| Psp1406I | AACGTT | 1 cut(s) | 1930 |
| Psp6I | CCWGG | 3 cut(s) | 426, 1029, 1501 |
| PspCI | CACGTG | 1 cut(s) | 1342 |
| PspGI | CCWGG | 3 cut(s) | 426, 1029, 1501 |
| PspN4I | GGNNCC | 5 cut(s) | 766, 831, 3175, 3293, 3369 |
| PspPI | GGNCC | 2 cut(s) | 424, 1027 |
| PspXI | VCTCGAGB | 1 cut(s) | 290 |
| PsuI | RGATCY | 4 cut(s) | 285, 606, 1936, 2404 |
| RsaI | GTAC | 5 cut(s) | 116, 553, 575, 1567, 1633 |
| RsaNI | GTAC | 5 cut(s) | 115, 552, 574, 1566, 1632 |
| RseI | CAYNNNNRTG | 7 cut(s) | 149, 1439, 1533, 1589, 3396, 3776, 3782 |
| SacI | GAGCTC | 1 cut(s) | 1395 |
| SalI | GTCGAC | 1 cut(s) | 1089 |
| SatI | GCNGC | 8 cut(s) | 441, 456, 1212, 1234, 1369, 1598, 2164, 3239 |
| Sau3AI | GATC | 9 cut(s) | 6, 285, 606, 858, 1276, 1936, 1969, 2404, 3394 |
| Sau96I | GGNCC | 2 cut(s) | 424, 1027 |
| SchI | GAGTC | 4 cut(s) | 1819, 2017, 2123, 2285 |
| ScrFI | CCNGG | 4 cut(s) | 428, 1031, 1503, 3714 |
| SduI | GDGCHC | 4 cut(s) | 1395, 2124, 3178, 3296 |
| Sfr274I | CTCGAG | 1 cut(s) | 290 |
| SinI | GGWCC | 2 cut(s) | 424, 1027 |
| SlaI | CTCGAG | 1 cut(s) | 290 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 149, 1439, 1533, 1589, 3396, 3776, 3782 |
| SmlI | CTYRAG | 6 cut(s) | 290, 1140, 1720, 1988, 2030, 2099 |
| SmoI | CTYRAG | 6 cut(s) | 290, 1140, 1720, 1988, 2030, 2099 |
| SpeI | ACTAGT | 1 cut(s) | 3301 |
| SphI | GCATGC | 1 cut(s) | 3549 |
| SsiI | CCGC | 3 cut(s) | 455, 2163, 3239 |
| SspI | AATATT | 3 cut(s) | 1353, 1561, 1877 |
| SstI | GAGCTC | 1 cut(s) | 1395 |
| StyD4I | CCNGG | 4 cut(s) | 426, 1029, 1501, 3712 |
| StyI | CCWWGG | 7 cut(s) | 47, 1023, 2024, 2277, 2415, 2622, 2898 |
| TaaI | ACNGT | 9 cut(s) | 213, 823, 1676, 1822, 1949, 3195, 3235, 3245, 3414 |
| TatI | WGTACW | 2 cut(s) | 114, 551 |
| TauI | GCSGC | 3 cut(s) | 458, 2166, 3241 |
| TscAI | CASTG | 4 cut(s) | 508, 1952, 3200, 3250 |
| TseFI | GTSAC | 7 cut(s) | 107, 1488, 1811, 1943, 3189, 3304, 3605 |
| TseI | GCWGC | 5 cut(s) | 440, 1211, 1233, 1368, 1597 |
| Tsp45I | GTSAC | 7 cut(s) | 107, 1488, 1811, 1943, 3189, 3304, 3605 |
| TspGWI | ACGGA | 2 cut(s) | 1966, 3267 |
| TspRI | CASTG | 4 cut(s) | 508, 1952, 3200, 3250 |
| VneI | GTGCAC | 1 cut(s) | 2120 |
| VpaK11BI | GGWCC | 2 cut(s) | 424, 1027 |
| VspI | ATTAAT | 2 cut(s) | 1386, 1797 |
| XbaI | TCTAGA | 1 cut(s) | 1054 |
| XceI | RCATGY | 6 cut(s) | 1314, 1651, 2572, 2848, 3549, 3781 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 265 |
| XhoI | CTCGAG | 1 cut(s) | 290 |
| XmaJI | CCTAGG | 1 cut(s) | 2024 |
| XmiI | GTMKAC | 1 cut(s) | 1090 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1296, 2868, 3354 |
| ZraI | GACGTC | 1 cut(s) | 1860 |
| Zsp2I | ATGCAT | 4 cut(s) | 253, 1446, 3115, 3551 |