TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 2 - 134 | 2.5e-40 | TIR domain |
| TIR_2 | PF13676 | 3 - 66 | 2.6e-07 | TIR domain |
| NB-ARC | PF00931 | 152 - 319 | 2.3e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 387 - 454 | 1.4e-16 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 632 - 740 | 8.3e-15 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 641 - 717 | 4.3e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 729 - 787 | 1.5e-13 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 735 - 790 | 5.9e-06 | Leucine rich repeat |
| LRR_14 | PF23598 | 785 - 826 | 2.9e-06 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 904 - 999 | 1e-05 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 906 - 1002 | 3.5e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 3165, 3431 |
| AatII | GACGTC | 1 cut(s) | 3019 |
| AccB1I | GGYRCC | 1 cut(s) | 2589 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 907 |
| AccII | CGCG | 1 cut(s) | 3024 |
| AccIII | TCCGGA | 1 cut(s) | 1769 |
| AciI | CCGC | 9 cut(s) | 311, 980, 1236, 2022, 2537, 3024, 3031, 3393, 3665 |
| AcoI | YGGCCR | 2 cut(s) | 423, 696 |
| AcuI | CTGAAG | 2 cut(s) | 1919, 2415 |
| AcyI | GRCGYC | 1 cut(s) | 3016 |
| AdeI | CACNNNGTG | 1 cut(s) | 1156 |
| AfaI | GTAC | 6 cut(s) | 409, 431, 814, 1504, 3397, 3720 |
| AfeI | AGCGCT | 2 cut(s) | 42, 2626 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 111, 277, 907, 971, 2599 |
| AflII | CTTAAG | 1 cut(s) | 1495 |
| AflIII | ACRYGT | 4 cut(s) | 1210, 2151, 2289, 3443 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3079 |
| AjiI | CACGTC | 1 cut(s) | 2152 |
| AjnI | CCWGG | 3 cut(s) | 1372, 2698, 3552 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 101, 133, 2460, 2492 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 480, 512, 3168, 3200 |
| Alw21I | GWGCWC | 3 cut(s) | 1266, 1983, 2521 |
| Alw26I | GTCTC | 4 cut(s) | 1401, 1762, 2898, 3173 |
| Alw44I | GTGCAC | 2 cut(s) | 1979, 2517 |
| Ama87I | CYCGRG | 2 cut(s) | 140, 3172 |
| Aor13HI | TCCGGA | 1 cut(s) | 1769 |
| Aor51HI | AGCGCT | 2 cut(s) | 42, 2626 |
| AoxI | GGCC | 6 cut(s) | 423, 696, 1015, 1275, 1607, 3213 |
| ApaLI | GTGCAC | 2 cut(s) | 1979, 2517 |
| ApeKI | GCWGC | 6 cut(s) | 296, 1082, 1104, 1468, 1878, 2557 |
| AseI | ATTAAT | 1 cut(s) | 3372 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 279, 947, 1167, 2652 |
| AspA2I | CCTAGG | 1 cut(s) | 3275 |
| AspLEI | GCGC | 2 cut(s) | 43, 2627 |
| AspS9I | GGNCC | 5 cut(s) | 898, 962, 1276, 3213, 3547 |
| AsuC2I | CCSGG | 5 cut(s) | 272, 2719, 3012, 3173, 3174 |
| AsuHPI | GGTGA | 8 cut(s) | 27, 818, 836, 1208, 1353, 1474, 2614, 3218 |
| AsuNHI | GCTAGC | 1 cut(s) | 3632 |
| AvaI | CYCGRG | 2 cut(s) | 140, 3172 |
| AvaII | GGWCC | 3 cut(s) | 898, 962, 3547 |
| AvrII | CCTAGG | 1 cut(s) | 3275 |
| BaeGI | GKGCMC | 3 cut(s) | 1983, 2521, 2594 |
| BalI | TGGCCA | 2 cut(s) | 425, 698 |
| BamHI | GGATCC | 1 cut(s) | 3027 |
| BanI | GGYRCC | 1 cut(s) | 2589 |
| BauI | CACGAG | 1 cut(s) | 450 |
| BbsI | GAAGAC | 2 cut(s) | 2828, 3011 |
| Bbv12I | GWGCWC | 3 cut(s) | 1266, 1983, 2521 |
| BbvI | GCAGC | 6 cut(s) | 308, 1069, 1116, 1455, 1865, 2544 |
| BceAI | ACGGC | 1 cut(s) | 3139 |
| BciT130I | CCWGG | 3 cut(s) | 1374, 2700, 3554 |
| BciVI | GTATCC | 1 cut(s) | 2481 |
| BclI | TGATCA | 7 cut(s) | 7, 723, 784, 2692, 3264, 3580, 3727 |
| BcnI | CCSGG | 5 cut(s) | 272, 2719, 3012, 3173, 3174 |
| BcoDI | GTCTC | 4 cut(s) | 1401, 1762, 2898, 3173 |
| BfmI | CTRYAG | 1 cut(s) | 3669 |
| BfoI | RGCGCY | 2 cut(s) | 44, 2628 |
| BfrI | CTTAAG | 1 cut(s) | 1495 |
| BfuI | GTATCC | 1 cut(s) | 2481 |
| BlnI | CCTAGG | 1 cut(s) | 3275 |
| Bme1390I | CCNGG | 8 cut(s) | 272, 1374, 2700, 2719, 3012, 3173, 3174, 3554 |
| Bme18I | GGWCC | 3 cut(s) | 898, 962, 3547 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3079 |
| BmeT110I | CYCGRG | 2 cut(s) | 140, 3172 |
| BmgBI | CACGTC | 1 cut(s) | 2152 |
| BmgT120I | GGNCC | 5 cut(s) | 898, 962, 1276, 3213, 3547 |
| BmiI | GGNNCC | 7 cut(s) | 1438, 2591, 2704, 3029, 3214, 3548, 3768 |
| BmrFI | CCNGG | 8 cut(s) | 272, 1374, 2700, 2719, 3012, 3173, 3174, 3554 |
| BmrI | ACTGGG | 1 cut(s) | 428 |
| BmtI | GCTAGC | 1 cut(s) | 3636 |
| BmuI | ACTGGG | 1 cut(s) | 428 |
| BpiI | GAAGAC | 2 cut(s) | 2828, 3011 |
| BpmI | CTGGAG | 1 cut(s) | 1584 |
| BpuEI | CTTGAG | 5 cut(s) | 911, 996, 1612, 1910, 1979 |
| BpuMI | CCSGG | 5 cut(s) | 272, 2719, 3012, 3173, 3174 |
| Bsa29I | ATCGAT | 1 cut(s) | 2186 |
| BsaBI | GATNNNNATC | 3 cut(s) | 74, 783, 3579 |
| BsaHI | GRCGYC | 1 cut(s) | 3016 |
| BsaI | GGTCTC | 1 cut(s) | 1401 |
| BsaJI | CCNNGG | 8 cut(s) | 198, 1372, 2136, 2343, 2717, 3172, 3275, 3702 |
| BsaWI | WCCGGW | 1 cut(s) | 1769 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 111, 277, 907, 971, 2599 |
| Bse1I | ACTGG | 4 cut(s) | 176, 434, 2604, 2997 |
| Bse3DI | GCAATG | 4 cut(s) | 746, 1079, 3098, 3634 |
| Bse8I | GATNNNNATC | 3 cut(s) | 74, 783, 3579 |
| BseAI | TCCGGA | 1 cut(s) | 1769 |
| BseBI | CCWGG | 3 cut(s) | 1374, 2700, 3554 |
| BseCI | ATCGAT | 1 cut(s) | 2186 |
| BseDI | CCNNGG | 8 cut(s) | 198, 1372, 2136, 2343, 2717, 3172, 3275, 3702 |
| BseJI | GATNNNNATC | 3 cut(s) | 74, 783, 3579 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 111, 277, 907, 971, 2599 |
| BseMI | GCAATG | 4 cut(s) | 746, 1079, 3098, 3634 |
| BseMII | CTCAG | 1 cut(s) | 351 |
| BseNI | ACTGG | 4 cut(s) | 176, 434, 2604, 2997 |
| BseRI | GAGGAG | 1 cut(s) | 36 |
| BseSI | GKGCMC | 3 cut(s) | 1983, 2521, 2594 |
| BseXI | GCAGC | 6 cut(s) | 308, 1069, 1116, 1455, 1865, 2544 |
| BsgI | GTGCAG | 1 cut(s) | 2664 |
| Bsh1236I | CGCG | 1 cut(s) | 3024 |
| BshFI | GGCC | 6 cut(s) | 425, 698, 1017, 1277, 1609, 3215 |
| BshNI | GGYRCC | 1 cut(s) | 2589 |
| BshVI | ATCGAT | 1 cut(s) | 2186 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1266, 1983, 2521 |
| BsiHKCI | CYCGRG | 2 cut(s) | 140, 3172 |
| BsiSI | CCGG | 6 cut(s) | 272, 1770, 2719, 2840, 3011, 3173 |
| BslFI | GGGAC | 3 cut(s) | 1602, 2355, 3027 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 111, 277, 907, 971, 2599 |
| BsmAI | GTCTC | 4 cut(s) | 1401, 1762, 2898, 3173 |
| BsmFI | GGGAC | 3 cut(s) | 1602, 2355, 3027 |
| BsmI | GAATGC | 2 cut(s) | 257, 949 |
| BsnI | GGCC | 6 cut(s) | 425, 698, 1017, 1277, 1609, 3215 |
| Bso31I | GGTCTC | 1 cut(s) | 1401 |
| BsoBI | CYCGRG | 2 cut(s) | 140, 3172 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1266, 1983, 2521, 2594 |
| Bsp13I | TCCGGA | 1 cut(s) | 1769 |
| BspACI | CCGC | 9 cut(s) | 311, 980, 1236, 2022, 2537, 3024, 3031, 3393, 3665 |
| BspANI | GGCC | 6 cut(s) | 425, 698, 1017, 1277, 1609, 3215 |
| BspCNI | CTCAG | 1 cut(s) | 350 |
| BspDI | ATCGAT | 1 cut(s) | 2186 |
| BspEI | TCCGGA | 1 cut(s) | 1769 |
| BspFNI | CGCG | 1 cut(s) | 3024 |
| BspHI | TCATGA | 6 cut(s) | 247, 877, 916, 1399, 3421, 3478 |
| BspLI | GGNNCC | 7 cut(s) | 1438, 2591, 2704, 3029, 3214, 3548, 3768 |
| BspOI | GCTAGC | 1 cut(s) | 3636 |
| BspT107I | GGYRCC | 1 cut(s) | 2589 |
| BspTI | CTTAAG | 1 cut(s) | 1495 |
| BspTNI | GGTCTC | 1 cut(s) | 1401 |
| BsrDI | GCAATG | 4 cut(s) | 746, 1079, 3098, 3634 |
| BsrI | ACTGG | 4 cut(s) | 176, 434, 2604, 2997 |
| BssECI | CCNNGG | 8 cut(s) | 198, 1372, 2136, 2343, 2717, 3172, 3275, 3702 |
| BssNI | GRCGYC | 1 cut(s) | 3016 |
| BssSI | CACGAG | 1 cut(s) | 450 |
| BssT1I | CCWWGG | 4 cut(s) | 2136, 2343, 3275, 3702 |
| Bst2BI | CACGAG | 1 cut(s) | 450 |
| Bst2UI | CCWGG | 3 cut(s) | 1374, 2700, 3554 |
| Bst6I | CTCTTC | 4 cut(s) | 54, 375, 484, 2658 |
| BstACI | GRCGYC | 1 cut(s) | 3016 |
| BstAFI | CTTAAG | 1 cut(s) | 1495 |
| BstC8I | GCNNGC | 4 cut(s) | 1234, 2623, 2845, 3634 |
| BstDEI | CTNAG | 5 cut(s) | 337, 757, 799, 1529, 2525 |
| BstEII | GGTNACC | 1 cut(s) | 806 |
| BstFNI | CGCG | 1 cut(s) | 3024 |
| BstH2I | RGCGCY | 2 cut(s) | 44, 2628 |
| BstHHI | GCGC | 2 cut(s) | 43, 2627 |
| BstMAI | GTCTC | 4 cut(s) | 1401, 1762, 2898, 3173 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 704, 2728, 3030, 3109, 3633, 3671, 3680 |
| BstNI | CCWGG | 3 cut(s) | 1374, 2700, 3554 |
| BstNSI | RCATGY | 5 cut(s) | 1185, 1214, 2293, 2847, 3447 |
| BstPI | GGTNACC | 1 cut(s) | 806 |
| BstSCI | CCNGG | 8 cut(s) | 270, 1372, 2698, 2717, 3010, 3171, 3172, 3552 |
| BstSFI | CTRYAG | 1 cut(s) | 3669 |
| BstSLI | GKGCMC | 3 cut(s) | 1983, 2521, 2594 |
| BstUI | CGCG | 1 cut(s) | 3024 |
| BstV1I | GCAGC | 6 cut(s) | 308, 1069, 1116, 1455, 1865, 2544 |
| BstV2I | GAAGAC | 2 cut(s) | 2828, 3011 |
| BstX2I | RGATCY | 4 cut(s) | 135, 462, 1795, 3027 |
| BstYI | RGATCY | 4 cut(s) | 135, 462, 1795, 3027 |
| Bsu15I | ATCGAT | 1 cut(s) | 2186 |
| BsuI | GTATCC | 1 cut(s) | 2481 |
| BsuRI | GGCC | 6 cut(s) | 425, 698, 1017, 1277, 1609, 3215 |
| BsuTUI | ATCGAT | 1 cut(s) | 2186 |
| BtrI | CACGTC | 1 cut(s) | 2152 |
| BtsIMutI | CAGTG | 2 cut(s) | 223, 2548 |
| Cac8I | GCNNGC | 4 cut(s) | 1234, 2623, 2845, 3634 |
| CciI | TCATGA | 6 cut(s) | 247, 877, 916, 1399, 3421, 3478 |
| CfoI | GCGC | 2 cut(s) | 43, 2627 |
| Cfr13I | GGNCC | 5 cut(s) | 898, 962, 1276, 3213, 3547 |
| Cfr9I | CCCGGG | 1 cut(s) | 3172 |
| ClaI | ATCGAT | 1 cut(s) | 2186 |
| CseI | GACGC | 2 cut(s) | 1563, 2435 |
| Csp6I | GTAC | 6 cut(s) | 408, 430, 813, 1503, 3396, 3719 |
| CviQI | GTAC | 6 cut(s) | 408, 430, 813, 1503, 3396, 3719 |
| DdeI | CTNAG | 5 cut(s) | 337, 757, 799, 1529, 2525 |
| DraI | TTTAAA | 3 cut(s) | 1192, 2502, 2740 |
| DraIII | CACNNNGTG | 1 cut(s) | 1156 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 3165, 3431 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3079 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 3165, 3431 |
| EaeI | YGGCCR | 2 cut(s) | 423, 696 |
| Eam1104I | CTCTTC | 4 cut(s) | 54, 375, 484, 2658 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3079 |
| EarI | CTCTTC | 4 cut(s) | 54, 375, 484, 2658 |
| Eco130I | CCWWGG | 4 cut(s) | 2136, 2343, 3275, 3702 |
| Eco147I | AGGCCT | 1 cut(s) | 1017 |
| Eco31I | GGTCTC | 1 cut(s) | 1401 |
| Eco47I | GGWCC | 3 cut(s) | 898, 962, 3547 |
| Eco47III | AGCGCT | 2 cut(s) | 42, 2626 |
| Eco57I | CTGAAG | 2 cut(s) | 1919, 2415 |
| Eco88I | CYCGRG | 2 cut(s) | 140, 3172 |
| Eco91I | GGTNACC | 1 cut(s) | 806 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1276 |
| EcoO65I | GGTNACC | 1 cut(s) | 806 |
| EcoRII | CCWGG | 3 cut(s) | 1372, 2698, 3552 |
| EcoT14I | CCWWGG | 4 cut(s) | 2136, 2343, 3275, 3702 |
| EcoT22I | ATGCAT | 3 cut(s) | 103, 1317, 2849 |
| ErhI | CCWWGG | 4 cut(s) | 2136, 2343, 3275, 3702 |
| FaqI | GGGAC | 3 cut(s) | 1602, 2355, 3027 |
| FauI | CCCGC | 1 cut(s) | 3017 |
| FauNDI | CATATG | 1 cut(s) | 501 |
| FbaI | TGATCA | 7 cut(s) | 7, 723, 784, 2692, 3264, 3580, 3727 |
| GlaI | GCGC | 2 cut(s) | 42, 2626 |
| GsuI | CTGGAG | 1 cut(s) | 1584 |
| HaeII | RGCGCY | 2 cut(s) | 44, 2628 |
| HaeIII | GGCC | 3 cut(s) | 425, 698, 1017 |
| HapII | CCGG | 6 cut(s) | 272, 1770, 2719, 2840, 3011, 3173 |
| HgaI | GACGC | 2 cut(s) | 1563, 2435 |
| HhaI | GCGC | 2 cut(s) | 43, 2627 |
| Hin1I | GRCGYC | 1 cut(s) | 3016 |
| Hin6I | GCGC | 2 cut(s) | 41, 2625 |
| HinP1I | GCGC | 2 cut(s) | 41, 2625 |
| HincII | GTYRAC | 2 cut(s) | 870, 3235 |
| HindII | GTYRAC | 2 cut(s) | 870, 3235 |
| HindIII | AAGCTT | 4 cut(s) | 470, 929, 1164, 1230 |
| HpaI | GTTAAC | 1 cut(s) | 3235 |
| HpaII | CCGG | 6 cut(s) | 272, 1770, 2719, 2840, 3011, 3173 |
| HphI | GGTGA | 8 cut(s) | 27, 818, 836, 1208, 1353, 1474, 2614, 3218 |
| Hpy99I | CGWCG | 1 cut(s) | 1806 |
| HpyCH4IV | ACGT | 6 cut(s) | 994, 1801, 2053, 2151, 3016, 3426 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 704, 2728, 3030, 3109, 3633, 3671, 3680 |
| HpyF3I | CTNAG | 5 cut(s) | 337, 757, 799, 1529, 2525 |
| HpySE526I | ACGT | 6 cut(s) | 994, 1801, 2053, 2151, 3016, 3426 |
| Hsp92I | GRCGYC | 1 cut(s) | 3016 |
| HspAI | GCGC | 2 cut(s) | 41, 2625 |
| Kpn2I | TCCGGA | 1 cut(s) | 1769 |
| Ksp22I | TGATCA | 7 cut(s) | 7, 723, 784, 2692, 3264, 3580, 3727 |
| KspAI | GTTAAC | 1 cut(s) | 3235 |
| LmnI | GCTCC | 3 cut(s) | 1930, 3152, 3460 |
| Lsp1109I | GCAGC | 6 cut(s) | 308, 1069, 1116, 1455, 1865, 2544 |
| MaeII | ACGT | 6 cut(s) | 994, 1801, 2053, 2151, 3016, 3426 |
| MaeIII | GTNAC | 5 cut(s) | 806, 1359, 2602, 3119, 3358 |
| MfeI | CAATTG | 6 cut(s) | 567, 863, 2256, 2325, 2394, 2463 |
| MflI | RGATCY | 4 cut(s) | 135, 462, 1795, 3027 |
| MhlI | GDGCHC | 4 cut(s) | 1266, 1983, 2521, 2594 |
| MlsI | TGGCCA | 2 cut(s) | 425, 698 |
| MluNI | TGGCCA | 2 cut(s) | 425, 698 |
| MlyI | GAGTC | 3 cut(s) | 71, 325, 2000 |
| MmeI | TCCRAC | 8 cut(s) | 920, 1531, 1539, 1819, 1925, 2693, 2943, 3803 |
| Mox20I | TGGCCA | 2 cut(s) | 425, 698 |
| Mph1103I | ATGCAT | 3 cut(s) | 103, 1317, 2849 |
| MroI | TCCGGA | 1 cut(s) | 1769 |
| MroXI | GAANNNNTTC | 4 cut(s) | 279, 947, 1167, 2652 |
| MscI | TGGCCA | 2 cut(s) | 425, 698 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1310, 1404, 1460, 3074, 3735 |
| Msp20I | TGGCCA | 2 cut(s) | 425, 698 |
| MspA1I | CMGCKG | 1 cut(s) | 3112 |
| MspCI | CTTAAG | 1 cut(s) | 1495 |
| MspI | CCGG | 6 cut(s) | 272, 1770, 2719, 2840, 3011, 3173 |
| MspR9I | CCNGG | 8 cut(s) | 272, 1374, 2700, 2719, 3012, 3173, 3174, 3554 |
| MunI | CAATTG | 6 cut(s) | 567, 863, 2256, 2325, 2394, 2463 |
| Mva1269I | GAATGC | 2 cut(s) | 257, 949 |
| MvaI | CCWGG | 3 cut(s) | 1374, 2700, 3554 |
| MvnI | CGCG | 1 cut(s) | 3024 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 704, 2728, 3030, 3109, 3633, 3671, 3680 |
| NciI | CCSGG | 5 cut(s) | 272, 2719, 3012, 3173, 3174 |
| NdeI | CATATG | 1 cut(s) | 501 |
| NheI | GCTAGC | 1 cut(s) | 3632 |
| NlaIV | GGNNCC | 7 cut(s) | 1438, 2591, 2704, 3029, 3214, 3548, 3768 |
| NmeAIII | GCCGAG | 1 cut(s) | 3581 |
| NmuCI | GTSAC | 5 cut(s) | 806, 1359, 2602, 3119, 3358 |
| NsiI | ATGCAT | 3 cut(s) | 103, 1317, 2849 |
| NspI | RCATGY | 5 cut(s) | 1185, 1214, 2293, 2847, 3447 |
| PaeI | GCATGC | 1 cut(s) | 2847 |
| PaeR7I | CTCGAG | 1 cut(s) | 140 |
| PagI | TCATGA | 6 cut(s) | 247, 877, 916, 1399, 3421, 3478 |
| PceI | AGGCCT | 1 cut(s) | 1017 |
| PciI | ACATGT | 3 cut(s) | 1210, 2289, 3443 |
| PctI | GAATGC | 2 cut(s) | 257, 949 |
| PdmI | GAANNNNTTC | 4 cut(s) | 279, 947, 1167, 2652 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 907 |
| PfoI | TCCNGGA | 1 cut(s) | 3010 |
| PleI | GAGTC | 4 cut(s) | 70, 220, 325, 797 |
| PpsI | GAGTC | 3 cut(s) | 70, 325, 1999 |
| PscI | ACATGT | 3 cut(s) | 1210, 2289, 3443 |
| PshBI | ATTAAT | 1 cut(s) | 3372 |
| Psp6I | CCWGG | 3 cut(s) | 1372, 2698, 3552 |
| PspEI | GGTNACC | 1 cut(s) | 806 |
| PspGI | CCWGG | 3 cut(s) | 1372, 2698, 3552 |
| PspN4I | GGNNCC | 7 cut(s) | 1438, 2591, 2704, 3029, 3214, 3548, 3768 |
| PspPI | GGNCC | 5 cut(s) | 898, 962, 1276, 3213, 3547 |
| PspXI | VCTCGAGB | 1 cut(s) | 140 |
| PsuI | RGATCY | 4 cut(s) | 135, 462, 1795, 3027 |
| PvuII | CAGCTG | 1 cut(s) | 3112 |
| RsaI | GTAC | 6 cut(s) | 409, 431, 814, 1504, 3397, 3720 |
| RsaNI | GTAC | 6 cut(s) | 408, 430, 813, 1503, 3396, 3719 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1310, 1404, 1460, 3074, 3735 |
| Sau96I | GGNCC | 5 cut(s) | 898, 962, 1276, 3213, 3547 |
| SchI | GAGTC | 3 cut(s) | 71, 325, 2000 |
| ScrFI | CCNGG | 8 cut(s) | 272, 1374, 2700, 2719, 3012, 3173, 3174, 3554 |
| SduI | GDGCHC | 4 cut(s) | 1266, 1983, 2521, 2594 |
| SfcI | CTRYAG | 1 cut(s) | 3669 |
| Sfr274I | CTCGAG | 1 cut(s) | 140 |
| SinI | GGWCC | 3 cut(s) | 898, 962, 3547 |
| SlaI | CTCGAG | 1 cut(s) | 140 |
| SmaI | CCCGGG | 1 cut(s) | 3174 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1310, 1404, 1460, 3074, 3735 |
| SmlI | CTYRAG | 7 cut(s) | 140, 926, 1011, 1495, 1591, 1889, 1958 |
| SmoI | CTYRAG | 7 cut(s) | 140, 926, 1011, 1495, 1591, 1889, 1958 |
| SphI | GCATGC | 1 cut(s) | 2847 |
| SseBI | AGGCCT | 1 cut(s) | 1017 |
| SsiI | CCGC | 9 cut(s) | 311, 980, 1236, 2022, 2537, 3024, 3031, 3393, 3665 |
| SspI | AATATT | 5 cut(s) | 1224, 1432, 1628, 2004, 2929 |
| StuI | AGGCCT | 1 cut(s) | 1017 |
| StyD4I | CCNGG | 8 cut(s) | 270, 1372, 2698, 2717, 3010, 3171, 3172, 3552 |
| StyI | CCWWGG | 4 cut(s) | 2136, 2343, 3275, 3702 |
| TaiI | ACGT | 6 cut(s) | 997, 1804, 2056, 2154, 3019, 3429 |
| TatI | WGTACW | 2 cut(s) | 407, 3718 |
| TauI | GCSGC | 5 cut(s) | 314, 1239, 2025, 2539, 3668 |
| TscAI | CASTG | 2 cut(s) | 223, 2548 |
| TseFI | GTSAC | 5 cut(s) | 806, 1359, 2602, 3119, 3358 |
| TseI | GCWGC | 6 cut(s) | 296, 1082, 1104, 1468, 1878, 2557 |
| Tsp45I | GTSAC | 5 cut(s) | 806, 1359, 2602, 3119, 3358 |
| TspGWI | ACGGA | 3 cut(s) | 975, 2565, 2815 |
| TspMI | CCCGGG | 1 cut(s) | 3172 |
| TspRI | CASTG | 2 cut(s) | 223, 2548 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 907 |
| Vha464I | CTTAAG | 1 cut(s) | 1495 |
| VneI | GTGCAC | 2 cut(s) | 1979, 2517 |
| VpaK11BI | GGWCC | 3 cut(s) | 898, 962, 3547 |
| VspI | ATTAAT | 1 cut(s) | 3372 |
| XceI | RCATGY | 5 cut(s) | 1185, 1214, 2293, 2847, 3447 |
| XhoI | CTCGAG | 1 cut(s) | 140 |
| XmaI | CCCGGG | 1 cut(s) | 3172 |
| XmaJI | CCTAGG | 1 cut(s) | 3275 |
| XmnI | GAANNNNTTC | 4 cut(s) | 279, 947, 1167, 2652 |
| ZraI | GACGTC | 1 cut(s) | 3017 |
| Zsp2I | ATGCAT | 3 cut(s) | 103, 1317, 2849 |