TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 122 - 245 | 1.3e-23 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 729 |
| Acc36I | ACCTGC | 1 cut(s) | 556 |
| AccI | GTMKAC | 1 cut(s) | 251 |
| AclI | AACGTT | 1 cut(s) | 805 |
| AclWI | GGATC | 1 cut(s) | 648 |
| AcsI | RAATTY | 3 cut(s) | 158, 180, 538 |
| AcyI | GRCGYC | 1 cut(s) | 457 |
| AfaI | GTAC | 1 cut(s) | 747 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 176, 347, 467 |
| AflII | CTTAAG | 1 cut(s) | 245 |
| AgsI | TTSAA | 3 cut(s) | 275, 358, 663 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 638, 670 |
| AluBI | AGCT | 3 cut(s) | 338, 788, 800 |
| AluI | AGCT | 3 cut(s) | 338, 788, 800 |
| Alw26I | GTCTC | 3 cut(s) | 40, 394, 554 |
| AlwI | GGATC | 1 cut(s) | 648 |
| AoxI | GGCC | 3 cut(s) | 113, 605, 625 |
| ApeKI | GCWGC | 3 cut(s) | 725, 788, 797 |
| ApoI | RAATTY | 3 cut(s) | 158, 180, 538 |
| AseI | ATTAAT | 1 cut(s) | 473 |
| AspLEI | GCGC | 1 cut(s) | 730 |
| AspS9I | GGNCC | 2 cut(s) | 605, 625 |
| AsuHPI | GGTGA | 1 cut(s) | 374 |
| BauI | CACGAG | 1 cut(s) | 65 |
| BbvI | GCAGC | 3 cut(s) | 712, 775, 809 |
| BccI | CCATC | 4 cut(s) | 324, 365, 505, 568 |
| BceAI | ACGGC | 1 cut(s) | 612 |
| BcoDI | GTCTC | 3 cut(s) | 40, 394, 554 |
| BfaI | CTAG | 4 cut(s) | 318, 690, 735, 743 |
| BfrI | CTTAAG | 1 cut(s) | 245 |
| BfuAI | ACCTGC | 1 cut(s) | 556 |
| BisI | GCNGC | 3 cut(s) | 726, 789, 798 |
| BlsI | GCNGC | 3 cut(s) | 727, 790, 799 |
| BmgT120I | GGNCC | 2 cut(s) | 605, 625 |
| BmsI | GCATC | 1 cut(s) | 688 |
| BpuEI | CTTGAG | 1 cut(s) | 285 |
| BsaHI | GRCGYC | 1 cut(s) | 457 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 26, 56 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 176, 347, 467 |
| BseGI | GGATG | 1 cut(s) | 376 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 176, 347, 467 |
| BseMII | CTCAG | 1 cut(s) | 561 |
| BseRI | GAGGAG | 1 cut(s) | 759 |
| BseXI | GCAGC | 3 cut(s) | 712, 775, 809 |
| BseYI | CCCAGC | 1 cut(s) | 407 |
| BshFI | GGCC | 3 cut(s) | 115, 607, 627 |
| BslFI | GGGAC | 1 cut(s) | 224 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 176, 347, 467 |
| BsmAI | GTCTC | 3 cut(s) | 40, 394, 554 |
| BsmFI | GGGAC | 1 cut(s) | 224 |
| BsnI | GGCC | 3 cut(s) | 115, 607, 627 |
| Bsp143I | GATC | 2 cut(s) | 532, 640 |
| BspANI | GGCC | 3 cut(s) | 115, 607, 627 |
| BspCNI | CTCAG | 1 cut(s) | 562 |
| BspMI | ACCTGC | 1 cut(s) | 556 |
| BspPI | GGATC | 1 cut(s) | 648 |
| BspTI | CTTAAG | 1 cut(s) | 245 |
| BssMI | GATC | 2 cut(s) | 532, 640 |
| BssNI | GRCGYC | 1 cut(s) | 457 |
| BssSI | CACGAG | 1 cut(s) | 65 |
| Bst2BI | CACGAG | 1 cut(s) | 65 |
| Bst4CI | ACNGT | 1 cut(s) | 42 |
| Bst6I | CTCTTC | 1 cut(s) | 688 |
| BstACI | GRCGYC | 1 cut(s) | 457 |
| BstAFI | CTTAAG | 1 cut(s) | 245 |
| BstC8I | GCNNGC | 2 cut(s) | 89, 732 |
| BstDEI | CTNAG | 1 cut(s) | 570 |
| BstF5I | GGATG | 1 cut(s) | 376 |
| BstHHI | GCGC | 1 cut(s) | 730 |
| BstKTI | GATC | 2 cut(s) | 535, 643 |
| BstMAI | GTCTC | 3 cut(s) | 40, 394, 554 |
| BstMBI | GATC | 2 cut(s) | 532, 640 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 731, 794, 797 |
| BstNSI | RCATGY | 3 cut(s) | 491, 507, 734 |
| BstV1I | GCAGC | 3 cut(s) | 712, 775, 809 |
| BstX2I | RGATCY | 1 cut(s) | 640 |
| BstYI | RGATCY | 1 cut(s) | 640 |
| BsuRI | GGCC | 3 cut(s) | 115, 607, 627 |
| BtsCI | GGATG | 1 cut(s) | 376 |
| BveI | ACCTGC | 1 cut(s) | 556 |
| Cac8I | GCNNGC | 2 cut(s) | 89, 732 |
| CfoI | GCGC | 1 cut(s) | 730 |
| Cfr13I | GGNCC | 2 cut(s) | 605, 625 |
| CseI | GACGC | 1 cut(s) | 446 |
| Csp6I | GTAC | 1 cut(s) | 746 |
| CviAII | CATG | 8 cut(s) | 131, 227, 266, 386, 488, 504, 731, 749 |
| CviQI | GTAC | 1 cut(s) | 746 |
| DdeI | CTNAG | 1 cut(s) | 570 |
| DpnI | GATC | 2 cut(s) | 534, 642 |
| DpnII | GATC | 2 cut(s) | 532, 640 |
| Eam1104I | CTCTTC | 1 cut(s) | 688 |
| EarI | CTCTTC | 1 cut(s) | 688 |
| EcoO109I | RGGNCCY | 1 cut(s) | 605 |
| FaeI | CATG | 8 cut(s) | 134, 230, 269, 389, 491, 507, 734, 752 |
| FaqI | GGGAC | 1 cut(s) | 224 |
| FatI | CATG | 8 cut(s) | 130, 226, 265, 385, 487, 503, 730, 748 |
| FauNDI | CATATG | 1 cut(s) | 813 |
| FblI | GTMKAC | 1 cut(s) | 251 |
| Fnu4HI | GCNGC | 3 cut(s) | 726, 789, 798 |
| FokI | GGATG | 1 cut(s) | 383 |
| Fsp4HI | GCNGC | 3 cut(s) | 726, 789, 798 |
| FspBI | CTAG | 4 cut(s) | 318, 690, 735, 743 |
| FspI | TGCGCA | 1 cut(s) | 729 |
| GlaI | GCGC | 1 cut(s) | 729 |
| GluI | GCNGC | 3 cut(s) | 726, 789, 798 |
| GsaI | CCCAGC | 1 cut(s) | 411 |
| HaeIII | GGCC | 3 cut(s) | 115, 607, 627 |
| HgaI | GACGC | 1 cut(s) | 446 |
| HhaI | GCGC | 1 cut(s) | 730 |
| Hin1I | GRCGYC | 1 cut(s) | 457 |
| Hin1II | CATG | 8 cut(s) | 134, 230, 269, 389, 491, 507, 734, 752 |
| Hin6I | GCGC | 1 cut(s) | 728 |
| HinP1I | GCGC | 1 cut(s) | 728 |
| HinfI | GANTC | 3 cut(s) | 9, 35, 566 |
| HphI | GGTGA | 1 cut(s) | 374 |
| Hpy166II | GTNNAC | 1 cut(s) | 252 |
| Hpy188I | TCNGA | 4 cut(s) | 537, 571, 601, 645 |
| Hpy188III | TCNNGA | 5 cut(s) | 67, 318, 393, 422, 468 |
| Hpy8I | GTNNAC | 1 cut(s) | 252 |
| HpyAV | CCTTC | 4 cut(s) | 181, 596, 783, 787 |
| HpyCH4III | ACNGT | 1 cut(s) | 42 |
| HpyCH4IV | ACGT | 1 cut(s) | 805 |
| HpyCH4V | TGCA | 8 cut(s) | 148, 257, 265, 491, 580, 676, 713, 797 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 731, 794, 797 |
| HpyF3I | CTNAG | 1 cut(s) | 570 |
| HpySE526I | ACGT | 1 cut(s) | 805 |
| Hsp92I | GRCGYC | 1 cut(s) | 457 |
| Hsp92II | CATG | 8 cut(s) | 134, 230, 269, 389, 491, 507, 734, 752 |
| HspAI | GCGC | 1 cut(s) | 728 |
| Kzo9I | GATC | 2 cut(s) | 532, 640 |
| LmnI | GCTCC | 1 cut(s) | 343 |
| LpnPI | CCDG | 7 cut(s) | 73, 301, 393, 432, 453, 495, 561 |
| Lsp1109I | GCAGC | 3 cut(s) | 712, 775, 809 |
| LweI | GCATC | 1 cut(s) | 688 |
| MaeI | CTAG | 4 cut(s) | 318, 690, 735, 743 |
| MaeII | ACGT | 1 cut(s) | 805 |
| MaeIII | GTNAC | 4 cut(s) | 36, 141, 543, 593 |
| MalI | GATC | 2 cut(s) | 534, 642 |
| MboI | GATC | 2 cut(s) | 532, 640 |
| MboII | GAAGA | 1 cut(s) | 705 |
| MfeI | CAATTG | 1 cut(s) | 516 |
| MflI | RGATCY | 1 cut(s) | 640 |
| MluCI | AATT | 9 cut(s) | 118, 158, 180, 275, 321, 474, 516, 538, 670 |
| MlyI | GAGTC | 2 cut(s) | 3, 44 |
| MmeI | TCCRAC | 1 cut(s) | 12 |
| MnlI | CCTC | 4 cut(s) | 352, 487, 631, 780 |
| MseI | TTAA | 2 cut(s) | 246, 473 |
| MspA1I | CMGCKG | 1 cut(s) | 800 |
| MspCI | CTTAAG | 1 cut(s) | 245 |
| MunI | CAATTG | 1 cut(s) | 516 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 731, 794, 797 |
| NdeI | CATATG | 1 cut(s) | 813 |
| NdeII | GATC | 2 cut(s) | 532, 640 |
| NlaIII | CATG | 8 cut(s) | 134, 230, 269, 389, 491, 507, 734, 752 |
| NmuCI | GTSAC | 1 cut(s) | 36 |
| NsbI | TGCGCA | 1 cut(s) | 729 |
| NspI | RCATGY | 3 cut(s) | 491, 507, 734 |
| PaeI | GCATGC | 1 cut(s) | 734 |
| PfeI | GAWTC | 1 cut(s) | 566 |
| PkrI | GCNGC | 3 cut(s) | 727, 790, 799 |
| PleI | GAGTC | 2 cut(s) | 3, 43 |
| PpsI | GAGTC | 2 cut(s) | 3, 43 |
| PshBI | ATTAAT | 1 cut(s) | 473 |
| Psp1406I | AACGTT | 1 cut(s) | 805 |
| PspFI | CCCAGC | 1 cut(s) | 407 |
| PspPI | GGNCC | 2 cut(s) | 605, 625 |
| PsuI | RGATCY | 1 cut(s) | 640 |
| PvuII | CAGCTG | 1 cut(s) | 800 |
| RsaI | GTAC | 1 cut(s) | 747 |
| RsaNI | GTAC | 1 cut(s) | 746 |
| SaqAI | TTAA | 2 cut(s) | 246, 473 |
| SatI | GCNGC | 3 cut(s) | 726, 789, 798 |
| Sau3AI | GATC | 2 cut(s) | 532, 640 |
| Sau96I | GGNCC | 2 cut(s) | 605, 625 |
| SchI | GAGTC | 2 cut(s) | 3, 44 |
| SetI | ASST | 9 cut(s) | 138, 224, 340, 498, 550, 711, 790, 802, 808 |
| SfaNI | GCATC | 1 cut(s) | 688 |
| SmlI | CTYRAG | 2 cut(s) | 245, 300 |
| SmoI | CTYRAG | 2 cut(s) | 245, 300 |
| SphI | GCATGC | 1 cut(s) | 734 |
| Sse9I | AATT | 9 cut(s) | 118, 158, 180, 275, 321, 474, 516, 538, 670 |
| SspMI | CTAG | 4 cut(s) | 318, 690, 735, 743 |
| TaaI | ACNGT | 1 cut(s) | 42 |
| TaiI | ACGT | 1 cut(s) | 808 |
| TaqI | TCGA | 1 cut(s) | 328 |
| TaqII | GACCGA | 1 cut(s) | 307 |
| TasI | AATT | 9 cut(s) | 118, 158, 180, 275, 321, 474, 516, 538, 670 |
| TatI | WGTACW | 1 cut(s) | 745 |
| TfiI | GAWTC | 1 cut(s) | 566 |
| Tru1I | TTAA | 2 cut(s) | 246, 473 |
| Tru9I | TTAA | 2 cut(s) | 246, 473 |
| TseFI | GTSAC | 1 cut(s) | 36 |
| TseI | GCWGC | 3 cut(s) | 725, 788, 797 |
| Tsp45I | GTSAC | 1 cut(s) | 36 |
| TspDTI | ATGAA | 3 cut(s) | 269, 441, 765 |
| Vha464I | CTTAAG | 1 cut(s) | 245 |
| VspI | ATTAAT | 1 cut(s) | 473 |
| XapI | RAATTY | 3 cut(s) | 158, 180, 538 |
| XbaI | TCTAGA | 1 cut(s) | 317 |
| XceI | RCATGY | 3 cut(s) | 491, 507, 734 |
| XmiI | GTMKAC | 1 cut(s) | 251 |
| XspI | CTAG | 4 cut(s) | 318, 690, 735, 743 |