TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TGS | PF02824 | 94 - 154 | 1.3e-17 | TGS domain |
| tRNA_SAD | PF07973 | 262 - 311 | 3e-12 | Threonyl and Alanyl tRNA synthetase second additional domain |
| tRNA-synt_2b | PF00587 | 412 - 622 | 1.3e-45 | tRNA synthetase class II core domain (G, H, P, S and T) |
| HGTP_anticodon | PF03129 | 634 - 723 | 1.1e-21 | Anticodon binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1098, 1118 |
| Acc36I | ACCTGC | 2 cut(s) | 1750, 1939 |
| AccB1I | GGYRCC | 3 cut(s) | 163, 1085, 1795 |
| AccI | GTMKAC | 1 cut(s) | 792 |
| AccII | CGCG | 1 cut(s) | 506 |
| AciI | CCGC | 7 cut(s) | 39, 61, 101, 104, 146, 156, 256 |
| AclWI | GGATC | 3 cut(s) | 269, 636, 717 |
| AcoI | YGGCCR | 1 cut(s) | 1877 |
| AcuI | CTGAAG | 1 cut(s) | 1547 |
| AcyI | GRCGYC | 2 cut(s) | 374, 1473 |
| AfaI | GTAC | 9 cut(s) | 110, 408, 539, 1021, 1172, 1553, 2025, 2048, 2103 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 434, 1369, 1921 |
| AflIII | ACRYGT | 1 cut(s) | 1167 |
| AjiI | CACGTC | 1 cut(s) | 1898 |
| AjnI | CCWGG | 4 cut(s) | 20, 234, 1057, 1625 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1539, 1571 |
| Alw21I | GWGCWC | 3 cut(s) | 450, 1384, 1863 |
| Alw26I | GTCTC | 1 cut(s) | 1924 |
| Alw44I | GTGCAC | 1 cut(s) | 1380 |
| AlwI | GGATC | 3 cut(s) | 269, 636, 717 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1033 |
| AoxI | GGCC | 7 cut(s) | 228, 425, 672, 802, 1371, 1541, 1877 |
| ApaLI | GTGCAC | 1 cut(s) | 1380 |
| ApeKI | GCWGC | 5 cut(s) | 4, 35, 152, 244, 1205 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 119, 2181 |
| AspLEI | GCGC | 4 cut(s) | 14, 506, 508, 693 |
| AspS9I | GGNCC | 5 cut(s) | 560, 803, 827, 1661, 1951 |
| AsuC2I | CCSGG | 3 cut(s) | 1090, 1281, 1955 |
| AsuHPI | GGTGA | 9 cut(s) | 319, 340, 449, 620, 778, 1037, 1787, 2081, 2107 |
| AsuII | TTCGAA | 1 cut(s) | 362 |
| AvaII | GGWCC | 4 cut(s) | 560, 827, 1661, 1951 |
| BaeGI | GKGCMC | 2 cut(s) | 168, 1384 |
| BanI | GGYRCC | 3 cut(s) | 163, 1085, 1795 |
| BanII | GRGCYC | 1 cut(s) | 450 |
| BauI | CACGAG | 1 cut(s) | 1398 |
| Bbv12I | GWGCWC | 3 cut(s) | 450, 1384, 1863 |
| BbvCI | CCTCAGC | 1 cut(s) | 1584 |
| BbvI | GCAGC | 4 cut(s) | 47, 164, 256, 1192 |
| BccI | CCATC | 3 cut(s) | 239, 1640, 2032 |
| BceAI | ACGGC | 4 cut(s) | 48, 91, 322, 1864 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1292, 1326 |
| BciT130I | CCWGG | 4 cut(s) | 22, 236, 1059, 1627 |
| BciVI | GTATCC | 1 cut(s) | 1136 |
| BclI | TGATCA | 1 cut(s) | 1003 |
| BcnI | CCSGG | 3 cut(s) | 1090, 1281, 1955 |
| BcoDI | GTCTC | 1 cut(s) | 1924 |
| BfaI | CTAG | 2 cut(s) | 501, 2060 |
| BfmI | CTRYAG | 1 cut(s) | 793 |
| BfuAI | ACCTGC | 2 cut(s) | 1750, 1939 |
| BfuI | GTATCC | 1 cut(s) | 1136 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 236, 1885 |
| BglII | AGATCT | 2 cut(s) | 1591, 1962 |
| BisI | GCNGC | 8 cut(s) | 5, 36, 39, 104, 153, 156, 245, 1206 |
| BlpI | GCTNAGC | 2 cut(s) | 240, 1944 |
| BlsI | GCNGC | 8 cut(s) | 6, 37, 40, 105, 154, 157, 246, 1207 |
| Bme1390I | CCNGG | 7 cut(s) | 22, 236, 1059, 1090, 1281, 1627, 1955 |
| Bme18I | GGWCC | 4 cut(s) | 560, 827, 1661, 1951 |
| BmgBI | CACGTC | 1 cut(s) | 1898 |
| BmgT120I | GGNCC | 5 cut(s) | 560, 803, 827, 1661, 1951 |
| BmiI | GGNNCC | 6 cut(s) | 165, 562, 805, 828, 1087, 1797 |
| BmrFI | CCNGG | 7 cut(s) | 22, 236, 1059, 1090, 1281, 1627, 1955 |
| BmsI | GCATC | 3 cut(s) | 586, 1414, 1678 |
| BoxI | GACNNNNGTC | 1 cut(s) | 819 |
| BpmI | CTGGAG | 1 cut(s) | 913 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1584 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 240, 1944 |
| Bpu14I | TTCGAA | 1 cut(s) | 362 |
| BpuEI | CTTGAG | 4 cut(s) | 434, 548, 740, 959 |
| BpuMI | CCSGG | 3 cut(s) | 1090, 1281, 1955 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1673 |
| BsaHI | GRCGYC | 2 cut(s) | 374, 1473 |
| BsaJI | CCNNGG | 5 cut(s) | 159, 807, 1280, 1555, 1625 |
| BsaWI | WCCGGW | 2 cut(s) | 111, 1362 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 82, 112, 527, 557, 1211, 1241 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 434, 1369, 1921 |
| Bse118I | RCCGGY | 1 cut(s) | 148 |
| Bse1I | ACTGG | 6 cut(s) | 259, 896, 1344, 1374, 1393, 2092 |
| Bse3DI | GCAATG | 1 cut(s) | 14 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1673 |
| BseBI | CCWGG | 4 cut(s) | 22, 236, 1059, 1627 |
| BseDI | CCNNGG | 5 cut(s) | 159, 807, 1280, 1555, 1625 |
| BseGI | GGATG | 4 cut(s) | 231, 1426, 1485, 1651 |
| BseJI | GATNNNNATC | 1 cut(s) | 1673 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 434, 1369, 1921 |
| BseMI | GCAATG | 1 cut(s) | 14 |
| BseMII | CTCAG | 6 cut(s) | 254, 384, 1575, 1779, 1958, 2048 |
| BseNI | ACTGG | 6 cut(s) | 259, 896, 1344, 1374, 1393, 2092 |
| BsePI | GCGCGC | 1 cut(s) | 504 |
| BseRI | GAGGAG | 4 cut(s) | 47, 121, 591, 2087 |
| BseSI | GKGCMC | 2 cut(s) | 168, 1384 |
| BseXI | GCAGC | 4 cut(s) | 47, 164, 256, 1192 |
| BseYI | CCCAGC | 1 cut(s) | 1932 |
| BsgI | GTGCAG | 1 cut(s) | 550 |
| Bsh1236I | CGCG | 1 cut(s) | 506 |
| BshFI | GGCC | 7 cut(s) | 230, 427, 674, 804, 1373, 1543, 1879 |
| BshNI | GGYRCC | 3 cut(s) | 163, 1085, 1795 |
| BsiHKAI | GWGCWC | 3 cut(s) | 450, 1384, 1863 |
| BsiSI | CCGG | 7 cut(s) | 112, 149, 296, 1090, 1280, 1363, 1954 |
| BsiWI | CGTACG | 1 cut(s) | 2101 |
| BslFI | GGGAC | 6 cut(s) | 247, 428, 497, 546, 840, 1970 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 434, 1369, 1921 |
| BsmAI | GTCTC | 1 cut(s) | 1924 |
| BsmFI | GGGAC | 6 cut(s) | 247, 428, 497, 546, 840, 1970 |
| BsmI | GAATGC | 2 cut(s) | 385, 496 |
| BsnI | GGCC | 7 cut(s) | 230, 427, 674, 804, 1373, 1543, 1879 |
| Bsp119I | TTCGAA | 1 cut(s) | 362 |
| Bsp1286I | GDGCHC | 4 cut(s) | 168, 450, 1384, 1863 |
| Bsp1407I | TGTACA | 1 cut(s) | 1170 |
| Bsp143I | GATC | 9 cut(s) | 274, 628, 709, 763, 907, 1003, 1522, 1591, 1962 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 240, 1944 |
| Bsp19I | CCATGG | 1 cut(s) | 159 |
| BspACI | CCGC | 7 cut(s) | 39, 61, 101, 104, 146, 156, 256 |
| BspANI | GGCC | 7 cut(s) | 230, 427, 674, 804, 1373, 1543, 1879 |
| BspCNI | CTCAG | 6 cut(s) | 253, 385, 1576, 1778, 1957, 2047 |
| BspFNI | CGCG | 1 cut(s) | 506 |
| BspLI | GGNNCC | 6 cut(s) | 165, 562, 805, 828, 1087, 1797 |
| BspMI | ACCTGC | 2 cut(s) | 1750, 1939 |
| BspPI | GGATC | 3 cut(s) | 269, 636, 717 |
| BspQI | GCTCTTC | 2 cut(s) | 227, 359 |
| BspT104I | TTCGAA | 1 cut(s) | 362 |
| BspT107I | GGYRCC | 3 cut(s) | 163, 1085, 1795 |
| BsrDI | GCAATG | 1 cut(s) | 14 |
| BsrFI | RCCGGY | 1 cut(s) | 148 |
| BsrGI | TGTACA | 1 cut(s) | 1170 |
| BsrI | ACTGG | 6 cut(s) | 259, 896, 1344, 1374, 1393, 2092 |
| BssAI | RCCGGY | 1 cut(s) | 148 |
| BssECI | CCNNGG | 5 cut(s) | 159, 807, 1280, 1555, 1625 |
| BssHII | GCGCGC | 1 cut(s) | 504 |
| BssMI | GATC | 9 cut(s) | 274, 628, 709, 763, 907, 1003, 1522, 1591, 1962 |
| BssNI | GRCGYC | 2 cut(s) | 374, 1473 |
| BssSI | CACGAG | 1 cut(s) | 1398 |
| BssT1I | CCWWGG | 3 cut(s) | 159, 807, 1555 |
| Bst2BI | CACGAG | 1 cut(s) | 1398 |
| Bst2UI | CCWGG | 4 cut(s) | 22, 236, 1059, 1627 |
| Bst4CI | ACNGT | 6 cut(s) | 71, 411, 443, 790, 1854, 2046 |
| Bst6I | CTCTTC | 3 cut(s) | 227, 359, 1338 |
| BstACI | GRCGYC | 2 cut(s) | 374, 1473 |
| BstAUI | TGTACA | 1 cut(s) | 1170 |
| BstBI | TTCGAA | 1 cut(s) | 362 |
| BstC8I | GCNNGC | 5 cut(s) | 150, 249, 425, 506, 1747 |
| BstDEI | CTNAG | 9 cut(s) | 240, 393, 1052, 1477, 1584, 1765, 1889, 1944, 2034 |
| BstDSI | CCRYGG | 1 cut(s) | 159 |
| BstF5I | GGATG | 4 cut(s) | 231, 1426, 1485, 1651 |
| BstFNI | CGCG | 1 cut(s) | 506 |
| BstHHI | GCGC | 4 cut(s) | 14, 506, 508, 693 |
| BstKTI | GATC | 9 cut(s) | 277, 631, 712, 766, 910, 1006, 1525, 1594, 1965 |
| BstMAI | GTCTC | 1 cut(s) | 1924 |
| BstMBI | GATC | 9 cut(s) | 274, 628, 709, 763, 907, 1003, 1522, 1591, 1962 |
| BstNI | CCWGG | 4 cut(s) | 22, 236, 1059, 1627 |
| BstNSI | RCATGY | 2 cut(s) | 870, 1171 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 819 |
| BstSCI | CCNGG | 7 cut(s) | 20, 234, 1057, 1088, 1279, 1625, 1953 |
| BstSFI | CTRYAG | 1 cut(s) | 793 |
| BstSLI | GKGCMC | 2 cut(s) | 168, 1384 |
| BstUI | CGCG | 1 cut(s) | 506 |
| BstV1I | GCAGC | 4 cut(s) | 47, 164, 256, 1192 |
| BstX2I | RGATCY | 2 cut(s) | 1591, 1962 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1065 |
| BstYI | RGATCY | 2 cut(s) | 1591, 1962 |
| BsuI | GTATCC | 1 cut(s) | 1136 |
| BsuRI | GGCC | 7 cut(s) | 230, 427, 674, 804, 1373, 1543, 1879 |
| BtgI | CCRYGG | 1 cut(s) | 159 |
| BtrI | CACGTC | 1 cut(s) | 1898 |
| BtsCI | GGATG | 4 cut(s) | 231, 1426, 1485, 1651 |
| BtsIMutI | CAGTG | 4 cut(s) | 1381, 1386, 1684, 1715 |
| BveI | ACCTGC | 2 cut(s) | 1750, 1939 |
| Cac8I | GCNNGC | 5 cut(s) | 150, 249, 425, 506, 1747 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1033 |
| CfoI | GCGC | 4 cut(s) | 14, 506, 508, 693 |
| Cfr10I | RCCGGY | 1 cut(s) | 148 |
| Cfr13I | GGNCC | 5 cut(s) | 560, 803, 827, 1661, 1951 |
| CseI | GACGC | 4 cut(s) | 191, 363, 968, 1462 |
| Csp6I | GTAC | 9 cut(s) | 109, 407, 538, 1020, 1171, 1552, 2024, 2047, 2102 |
| CviAII | CATG | 8 cut(s) | 160, 418, 867, 1108, 1168, 1202, 1572, 2140 |
| CviQI | GTAC | 9 cut(s) | 109, 407, 538, 1020, 1171, 1552, 2024, 2047, 2102 |
| DdeI | CTNAG | 9 cut(s) | 240, 393, 1052, 1477, 1584, 1765, 1889, 1944, 2034 |
| DpnI | GATC | 9 cut(s) | 276, 630, 711, 765, 909, 1005, 1524, 1593, 1964 |
| DpnII | GATC | 9 cut(s) | 274, 628, 709, 763, 907, 1003, 1522, 1591, 1962 |
| EaeI | YGGCCR | 1 cut(s) | 1877 |
| Eam1104I | CTCTTC | 3 cut(s) | 227, 359, 1338 |
| EarI | CTCTTC | 3 cut(s) | 227, 359, 1338 |
| EciI | GGCGGA | 2 cut(s) | 50, 90 |
| Ecl136II | GAGCTC | 1 cut(s) | 448 |
| Eco130I | CCWWGG | 3 cut(s) | 159, 807, 1555 |
| Eco147I | AGGCCT | 1 cut(s) | 427 |
| Eco24I | GRGCYC | 1 cut(s) | 450 |
| Eco32I | GATATC | 2 cut(s) | 27, 1675 |
| Eco47I | GGWCC | 4 cut(s) | 560, 827, 1661, 1951 |
| Eco53kI | GAGCTC | 1 cut(s) | 448 |
| Eco57I | CTGAAG | 1 cut(s) | 1547 |
| EcoICRI | GAGCTC | 1 cut(s) | 448 |
| EcoRII | CCWGG | 4 cut(s) | 20, 234, 1057, 1625 |
| EcoRV | GATATC | 2 cut(s) | 27, 1675 |
| EcoT14I | CCWWGG | 3 cut(s) | 159, 807, 1555 |
| EcoT22I | ATGCAT | 2 cut(s) | 601, 1693 |
| EcoT38I | GRGCYC | 1 cut(s) | 450 |
| ErhI | CCWWGG | 3 cut(s) | 159, 807, 1555 |
| FaeI | CATG | 8 cut(s) | 163, 421, 870, 1111, 1171, 1205, 1575, 2143 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1460, 1492 |
| FaqI | GGGAC | 6 cut(s) | 247, 428, 497, 546, 840, 1970 |
| FatI | CATG | 8 cut(s) | 159, 417, 866, 1107, 1167, 1201, 1571, 2139 |
| FbaI | TGATCA | 1 cut(s) | 1003 |
| FblI | GTMKAC | 1 cut(s) | 792 |
| Fnu4HI | GCNGC | 8 cut(s) | 5, 36, 39, 104, 153, 156, 245, 1206 |
| FokI | GGATG | 4 cut(s) | 218, 1433, 1472, 1658 |
| FriOI | GRGCYC | 1 cut(s) | 450 |
| Fsp4HI | GCNGC | 8 cut(s) | 5, 36, 39, 104, 153, 156, 245, 1206 |
| FspBI | CTAG | 2 cut(s) | 501, 2060 |
| GlaI | GCGC | 4 cut(s) | 13, 505, 507, 692 |
| GluI | GCNGC | 8 cut(s) | 5, 36, 39, 104, 153, 156, 245, 1206 |
| GsaI | CCCAGC | 1 cut(s) | 1936 |
| GsuI | CTGGAG | 1 cut(s) | 913 |
| HaeIII | GGCC | 7 cut(s) | 230, 427, 674, 804, 1373, 1543, 1879 |
| HapII | CCGG | 7 cut(s) | 112, 149, 296, 1090, 1280, 1363, 1954 |
| HgaI | GACGC | 4 cut(s) | 191, 363, 968, 1462 |
| HhaI | GCGC | 4 cut(s) | 14, 506, 508, 693 |
| Hin1I | GRCGYC | 2 cut(s) | 374, 1473 |
| Hin1II | CATG | 8 cut(s) | 163, 421, 870, 1111, 1171, 1205, 1575, 2143 |
| Hin6I | GCGC | 4 cut(s) | 12, 504, 506, 691 |
| HinP1I | GCGC | 4 cut(s) | 12, 504, 506, 691 |
| HincII | GTYRAC | 2 cut(s) | 814, 1993 |
| HindII | GTYRAC | 2 cut(s) | 814, 1993 |
| HindIII | AAGCTT | 2 cut(s) | 916, 2178 |
| HinfI | GANTC | 7 cut(s) | 97, 213, 647, 741, 1410, 1445, 2123 |
| HpaII | CCGG | 7 cut(s) | 112, 149, 296, 1090, 1280, 1363, 1954 |
| HphI | GGTGA | 9 cut(s) | 319, 340, 449, 620, 778, 1037, 1787, 2081, 2107 |
| Hpy166II | GTNNAC | 7 cut(s) | 407, 459, 793, 814, 1382, 1895, 1993 |
| Hpy188I | TCNGA | 8 cut(s) | 274, 394, 518, 733, 1527, 1687, 1924, 2037 |
| Hpy188III | TCNNGA | 7 cut(s) | 283, 527, 651, 911, 947, 983, 1405 |
| Hpy8I | GTNNAC | 7 cut(s) | 407, 459, 793, 814, 1382, 1895, 1993 |
| Hpy99I | CGWCG | 3 cut(s) | 185, 347, 379 |
| HpyAV | CCTTC | 8 cut(s) | 279, 298, 304, 346, 470, 868, 1634, 1775 |
| HpyCH4III | ACNGT | 6 cut(s) | 71, 411, 443, 790, 1854, 2046 |
| HpyCH4IV | ACGT | 4 cut(s) | 290, 345, 1897, 2130 |
| HpyF3I | CTNAG | 9 cut(s) | 240, 393, 1052, 1477, 1584, 1765, 1889, 1944, 2034 |
| HpySE526I | ACGT | 4 cut(s) | 290, 345, 1897, 2130 |
| Hsp92I | GRCGYC | 2 cut(s) | 374, 1473 |
| Hsp92II | CATG | 8 cut(s) | 163, 421, 870, 1111, 1171, 1205, 1575, 2143 |
| HspAI | GCGC | 4 cut(s) | 12, 504, 506, 691 |
| KroI | GCCGGC | 1 cut(s) | 148 |
| KroNI | GCCGGC | 1 cut(s) | 150 |
| Ksp22I | TGATCA | 1 cut(s) | 1003 |
| Kzo9I | GATC | 9 cut(s) | 274, 628, 709, 763, 907, 1003, 1522, 1591, 1962 |
| LguI | GCTCTTC | 2 cut(s) | 227, 359 |
| LmnI | GCTCC | 3 cut(s) | 653, 1030, 1858 |
| Lsp1109I | GCAGC | 4 cut(s) | 47, 164, 256, 1192 |
| LweI | GCATC | 3 cut(s) | 586, 1414, 1678 |
| MaeI | CTAG | 2 cut(s) | 501, 2060 |
| MaeII | ACGT | 4 cut(s) | 290, 345, 1897, 2130 |
| MaeIII | GTNAC | 6 cut(s) | 65, 71, 328, 437, 700, 1446 |
| MalI | GATC | 9 cut(s) | 276, 630, 711, 765, 909, 1005, 1524, 1593, 1964 |
| MboI | GATC | 9 cut(s) | 274, 628, 709, 763, 907, 1003, 1522, 1591, 1962 |
| MboII | GAAGA | 9 cut(s) | 214, 331, 376, 758, 873, 998, 1063, 1325, 1790 |
| MfeI | CAATTG | 1 cut(s) | 1905 |
| MflI | RGATCY | 2 cut(s) | 1591, 1962 |
| MhlI | GDGCHC | 4 cut(s) | 168, 450, 1384, 1863 |
| MluCI | AATT | 4 cut(s) | 642, 1210, 1273, 1905 |
| MlyI | GAGTC | 2 cut(s) | 91, 1454 |
| MmeI | TCCRAC | 2 cut(s) | 1836, 2151 |
| Mph1103I | ATGCAT | 2 cut(s) | 601, 1693 |
| MroNI | GCCGGC | 1 cut(s) | 148 |
| MroXI | GAANNNNTTC | 2 cut(s) | 119, 2181 |
| MseI | TTAA | 7 cut(s) | 669, 1041, 1292, 1394, 1467, 1607, 2163 |
| MslI | CAYNNNNRTG | 2 cut(s) | 865, 1365 |
| MspI | CCGG | 7 cut(s) | 112, 149, 296, 1090, 1280, 1363, 1954 |
| MspR9I | CCNGG | 7 cut(s) | 22, 236, 1059, 1090, 1281, 1627, 1955 |
| MunI | CAATTG | 1 cut(s) | 1905 |
| Mva1269I | GAATGC | 2 cut(s) | 385, 496 |
| MvaI | CCWGG | 4 cut(s) | 22, 236, 1059, 1627 |
| MvnI | CGCG | 1 cut(s) | 506 |
| NaeI | GCCGGC | 1 cut(s) | 150 |
| NciI | CCSGG | 3 cut(s) | 1090, 1281, 1955 |
| NcoI | CCATGG | 1 cut(s) | 159 |
| NdeII | GATC | 9 cut(s) | 274, 628, 709, 763, 907, 1003, 1522, 1591, 1962 |
| NgoMIV | GCCGGC | 1 cut(s) | 148 |
| NlaIII | CATG | 8 cut(s) | 163, 421, 870, 1111, 1171, 1205, 1575, 2143 |
| NlaIV | GGNNCC | 6 cut(s) | 165, 562, 805, 828, 1087, 1797 |
| NmuCI | GTSAC | 3 cut(s) | 328, 437, 1446 |
| NsiI | ATGCAT | 2 cut(s) | 601, 1693 |
| NspI | RCATGY | 2 cut(s) | 870, 1171 |
| NspV | TTCGAA | 1 cut(s) | 362 |
| PauI | GCGCGC | 1 cut(s) | 504 |
| PceI | AGGCCT | 1 cut(s) | 427 |
| PciI | ACATGT | 1 cut(s) | 1167 |
| PciSI | GCTCTTC | 2 cut(s) | 227, 359 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 189 |
| PctI | GAATGC | 2 cut(s) | 385, 496 |
| PdiI | GCCGGC | 1 cut(s) | 150 |
| PdmI | GAANNNNTTC | 2 cut(s) | 119, 2181 |
| PfeI | GAWTC | 5 cut(s) | 213, 647, 741, 1410, 2123 |
| Pfl23II | CGTACG | 1 cut(s) | 2101 |
| PfoI | TCCNGGA | 2 cut(s) | 1057, 1953 |
| PkrI | GCNGC | 8 cut(s) | 6, 37, 40, 105, 154, 157, 246, 1207 |
| PleI | GAGTC | 2 cut(s) | 91, 1453 |
| PpsI | GAGTC | 2 cut(s) | 91, 1453 |
| PscI | ACATGT | 1 cut(s) | 1167 |
| PshAI | GACNNNNGTC | 1 cut(s) | 819 |
| PsiI | TTATAA | 2 cut(s) | 1098, 1118 |
| Psp124BI | GAGCTC | 1 cut(s) | 450 |
| Psp6I | CCWGG | 4 cut(s) | 20, 234, 1057, 1625 |
| PspFI | CCCAGC | 1 cut(s) | 1932 |
| PspGI | CCWGG | 4 cut(s) | 20, 234, 1057, 1625 |
| PspLI | CGTACG | 1 cut(s) | 2101 |
| PspN4I | GGNNCC | 6 cut(s) | 165, 562, 805, 828, 1087, 1797 |
| PspPI | GGNCC | 5 cut(s) | 560, 803, 827, 1661, 1951 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1033 |
| PsuI | RGATCY | 2 cut(s) | 1591, 1962 |
| PteI | GCGCGC | 1 cut(s) | 504 |
| RsaI | GTAC | 9 cut(s) | 110, 408, 539, 1021, 1172, 1553, 2025, 2048, 2103 |
| RsaNI | GTAC | 9 cut(s) | 109, 407, 538, 1020, 1171, 1552, 2024, 2047, 2102 |
| RseI | CAYNNNNRTG | 2 cut(s) | 865, 1365 |
| SacI | GAGCTC | 1 cut(s) | 450 |
| SapI | GCTCTTC | 2 cut(s) | 227, 359 |
| SaqAI | TTAA | 7 cut(s) | 669, 1041, 1292, 1394, 1467, 1607, 2163 |
| SatI | GCNGC | 8 cut(s) | 5, 36, 39, 104, 153, 156, 245, 1206 |
| Sau3AI | GATC | 9 cut(s) | 274, 628, 709, 763, 907, 1003, 1522, 1591, 1962 |
| Sau96I | GGNCC | 5 cut(s) | 560, 803, 827, 1661, 1951 |
| SchI | GAGTC | 2 cut(s) | 91, 1454 |
| ScrFI | CCNGG | 7 cut(s) | 22, 236, 1059, 1090, 1281, 1627, 1955 |
| SduI | GDGCHC | 4 cut(s) | 168, 450, 1384, 1863 |
| SfaNI | GCATC | 3 cut(s) | 586, 1414, 1678 |
| SfcI | CTRYAG | 1 cut(s) | 793 |
| SfuI | TTCGAA | 1 cut(s) | 362 |
| SinI | GGWCC | 4 cut(s) | 560, 827, 1661, 1951 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 865, 1365 |
| SmlI | CTYRAG | 4 cut(s) | 449, 527, 719, 974 |
| SmoI | CTYRAG | 4 cut(s) | 449, 527, 719, 974 |
| Sse9I | AATT | 4 cut(s) | 642, 1210, 1273, 1905 |
| SseBI | AGGCCT | 1 cut(s) | 427 |
| SsiI | CCGC | 7 cut(s) | 39, 61, 101, 104, 146, 156, 256 |
| SspMI | CTAG | 2 cut(s) | 501, 2060 |
| SstI | GAGCTC | 1 cut(s) | 450 |
| StuI | AGGCCT | 1 cut(s) | 427 |
| StyD4I | CCNGG | 7 cut(s) | 20, 234, 1057, 1088, 1279, 1625, 1953 |
| StyI | CCWWGG | 3 cut(s) | 159, 807, 1555 |
| TaaI | ACNGT | 6 cut(s) | 71, 411, 443, 790, 1854, 2046 |
| TaiI | ACGT | 4 cut(s) | 293, 348, 1900, 2133 |
| TaqI | TCGA | 6 cut(s) | 192, 225, 342, 362, 377, 1336 |
| TaqII | GACCGA | 1 cut(s) | 548 |
| TasI | AATT | 4 cut(s) | 642, 1210, 1273, 1905 |
| TatI | WGTACW | 3 cut(s) | 406, 1170, 2046 |
| TauI | GCSGC | 3 cut(s) | 41, 106, 158 |
| TfiI | GAWTC | 5 cut(s) | 213, 647, 741, 1410, 2123 |
| Tru1I | TTAA | 7 cut(s) | 669, 1041, 1292, 1394, 1467, 1607, 2163 |
| Tru9I | TTAA | 7 cut(s) | 669, 1041, 1292, 1394, 1467, 1607, 2163 |
| TscAI | CASTG | 4 cut(s) | 1381, 1393, 1684, 1715 |
| TseFI | GTSAC | 3 cut(s) | 328, 437, 1446 |
| TseI | GCWGC | 5 cut(s) | 4, 35, 152, 244, 1205 |
| Tsp45I | GTSAC | 3 cut(s) | 328, 437, 1446 |
| TspDTI | ATGAA | 6 cut(s) | 489, 1286, 1474, 1476, 1653, 2174 |
| TspGWI | ACGGA | 1 cut(s) | 1674 |
| TspRI | CASTG | 4 cut(s) | 1381, 1393, 1684, 1715 |
| VneI | GTGCAC | 1 cut(s) | 1380 |
| VpaK11BI | GGWCC | 4 cut(s) | 560, 827, 1661, 1951 |
| XceI | RCATGY | 2 cut(s) | 870, 1171 |
| XmiI | GTMKAC | 1 cut(s) | 792 |
| XmnI | GAANNNNTTC | 2 cut(s) | 119, 2181 |
| XspI | CTAG | 2 cut(s) | 501, 2060 |
| Zsp2I | ATGCAT | 2 cut(s) | 601, 1693 |