TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 36 - 198 | 3.9e-54 | TIR domain |
| TIR_2 | PF13676 | 38 - 130 | 3.4e-14 | TIR domain |
| NB-ARC | PF00931 | 223 - 384 | 1.9e-21 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 454 - 524 | 1.4e-14 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_4 | PF12799 | 665 - 708 | 2.7e-07 | Leucine Rich repeats (2 copies) |
| LRR_4 | PF12799 | 711 - 754 | 9.2e-06 | Leucine Rich repeats (2 copies) |
| LRR_EndoS | PF23952 | 725 - 798 | 9.3e-06 | Endo-beta-N-acetylglucosaminidase EndoS LRR domain |
| LRR_4 | PF12799 | 757 - 800 | 8.1e-06 | Leucine Rich repeats (2 copies) |
| LRR_4 | PF12799 | 803 - 846 | 2.8e-06 | Leucine Rich repeats (2 copies) |
| LRR_4 | PF12799 | 849 - 892 | 6e-08 | Leucine Rich repeats (2 copies) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 914 |
| Acc36I | ACCTGC | 1 cut(s) | 1286 |
| Acc65I | GGTACC | 1 cut(s) | 1812 |
| AccB1I | GGYRCC | 1 cut(s) | 1812 |
| AccI | GTMKAC | 2 cut(s) | 652, 1620 |
| AclI | AACGTT | 1 cut(s) | 1051 |
| AclWI | GGATC | 2 cut(s) | 1811, 2733 |
| AcsI | RAATTY | 9 cut(s) | 554, 874, 1026, 1942, 2011, 2080, 2149, 2218, 2287 |
| AcuI | CTGAAG | 2 cut(s) | 184, 2054 |
| AfaI | GTAC | 9 cut(s) | 167, 408, 545, 1648, 1814, 1957, 2371, 2578, 2647 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 312, 2689 |
| AflII | CTTAAG | 2 cut(s) | 1981, 2671 |
| AflIII | ACRYGT | 2 cut(s) | 1186, 1934 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 659 |
| AhlI | ACTAGT | 1 cut(s) | 785 |
| AjiI | CACGTC | 1 cut(s) | 961 |
| AjnI | CCWGG | 1 cut(s) | 718 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 618, 650 |
| Alw21I | GWGCWC | 2 cut(s) | 246, 1872 |
| Alw26I | GTCTC | 3 cut(s) | 542, 838, 1582 |
| AlwI | GGATC | 2 cut(s) | 1811, 2733 |
| Ama87I | CYCGRG | 4 cut(s) | 588, 1015, 1583, 1675 |
| AoxI | GGCC | 5 cut(s) | 361, 538, 716, 1012, 1207 |
| ApeKI | GCWGC | 7 cut(s) | 44, 47, 506, 1406, 1474, 1593, 2816 |
| ApoI | RAATTY | 9 cut(s) | 554, 874, 1026, 1942, 2011, 2080, 2149, 2218, 2287 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1368 |
| Asp718I | GGTACC | 1 cut(s) | 1812 |
| AspS9I | GGNCC | 5 cut(s) | 538, 716, 1013, 1298, 1672 |
| AsuC2I | CCSGG | 4 cut(s) | 1016, 1017, 1584, 1585 |
| AsuHPI | GGTGA | 4 cut(s) | 443, 895, 1468, 1563 |
| AvaI | CYCGRG | 4 cut(s) | 588, 1015, 1583, 1675 |
| AvaII | GGWCC | 2 cut(s) | 1298, 1672 |
| AxyI | CCTNAGG | 1 cut(s) | 1302 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1804, 1837 |
| BanI | GGYRCC | 1 cut(s) | 1812 |
| BanII | GRGCYC | 3 cut(s) | 246, 1872, 2797 |
| BbsI | GAAGAC | 2 cut(s) | 234, 277 |
| Bbv12I | GWGCWC | 2 cut(s) | 246, 1872 |
| BbvI | GCAGC | 7 cut(s) | 56, 59, 518, 1418, 1461, 1605, 2803 |
| BccI | CCATC | 2 cut(s) | 516, 1003 |
| BciT130I | CCWGG | 1 cut(s) | 720 |
| BciVI | GTATCC | 1 cut(s) | 130 |
| BclI | TGATCA | 1 cut(s) | 895 |
| BcnI | CCSGG | 4 cut(s) | 1016, 1017, 1584, 1585 |
| BcoDI | GTCTC | 3 cut(s) | 542, 838, 1582 |
| BcuI | ACTAGT | 1 cut(s) | 785 |
| BfaI | CTAG | 5 cut(s) | 786, 827, 1172, 1346, 1427 |
| BfmI | CTRYAG | 1 cut(s) | 346 |
| BfrI | CTTAAG | 2 cut(s) | 1981, 2671 |
| BfuAI | ACCTGC | 1 cut(s) | 1286 |
| BfuI | GTATCC | 1 cut(s) | 130 |
| BglII | AGATCT | 1 cut(s) | 809 |
| BisI | GCNGC | 7 cut(s) | 45, 48, 507, 1407, 1475, 1594, 2817 |
| BlpI | GCTNAGC | 1 cut(s) | 215 |
| BlsI | GCNGC | 7 cut(s) | 46, 49, 508, 1408, 1476, 1595, 2818 |
| Bme1390I | CCNGG | 5 cut(s) | 720, 1016, 1017, 1584, 1585 |
| Bme18I | GGWCC | 2 cut(s) | 1298, 1672 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 659 |
| BmeT110I | CYCGRG | 4 cut(s) | 588, 1015, 1583, 1675 |
| BmgBI | CACGTC | 1 cut(s) | 961 |
| BmgT120I | GGNCC | 5 cut(s) | 538, 716, 1013, 1298, 1672 |
| BmiI | GGNNCC | 4 cut(s) | 396, 717, 1674, 1814 |
| BmrFI | CCNGG | 5 cut(s) | 720, 1016, 1017, 1584, 1585 |
| BmsI | GCATC | 4 cut(s) | 446, 483, 1330, 1512 |
| BoxI | GACNNNNGTC | 1 cut(s) | 963 |
| BpiI | GAAGAC | 2 cut(s) | 234, 277 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 478, 510 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 215 |
| BpuMI | CCSGG | 4 cut(s) | 1016, 1017, 1584, 1585 |
| Bsa29I | ATCGAT | 2 cut(s) | 454, 1806 |
| BsaBI | GATNNNNATC | 2 cut(s) | 93, 2361 |
| BsaJI | CCNNGG | 5 cut(s) | 681, 1015, 1204, 1583, 1676 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 228, 258, 527, 557 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 312, 2689 |
| Bse118I | RCCGGY | 1 cut(s) | 540 |
| Bse1I | ACTGG | 2 cut(s) | 51, 333 |
| Bse21I | CCTNAGG | 1 cut(s) | 1302 |
| Bse8I | GATNNNNATC | 2 cut(s) | 93, 2361 |
| BseBI | CCWGG | 1 cut(s) | 720 |
| BseCI | ATCGAT | 2 cut(s) | 454, 1806 |
| BseDI | CCNNGG | 5 cut(s) | 681, 1015, 1204, 1583, 1676 |
| BseGI | GGATG | 8 cut(s) | 527, 628, 995, 1527, 1958, 2372, 2579, 2648 |
| BseJI | GATNNNNATC | 2 cut(s) | 93, 2361 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 312, 2689 |
| BseMII | CTCAG | 4 cut(s) | 110, 173, 414, 1316 |
| BseNI | ACTGG | 2 cut(s) | 51, 333 |
| BseRI | GAGGAG | 3 cut(s) | 236, 237, 1277 |
| BseXI | GCAGC | 7 cut(s) | 56, 59, 518, 1418, 1461, 1605, 2803 |
| BsgI | GTGCAG | 2 cut(s) | 1425, 2802 |
| BshFI | GGCC | 5 cut(s) | 363, 540, 718, 1014, 1209 |
| BshNI | GGYRCC | 1 cut(s) | 1812 |
| BshVI | ATCGAT | 2 cut(s) | 454, 1806 |
| BsiHKAI | GWGCWC | 2 cut(s) | 246, 1872 |
| BsiHKCI | CYCGRG | 4 cut(s) | 588, 1015, 1583, 1675 |
| BsiSI | CCGG | 3 cut(s) | 541, 1016, 1584 |
| BslFI | GGGAC | 3 cut(s) | 881, 1658, 1923 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 312, 2689 |
| BsmAI | GTCTC | 3 cut(s) | 542, 838, 1582 |
| BsmBI | CGTCTC | 1 cut(s) | 1582 |
| BsmFI | GGGAC | 3 cut(s) | 881, 1658, 1923 |
| BsmI | GAATGC | 4 cut(s) | 930, 1139, 1665, 1708 |
| BsnI | GGCC | 5 cut(s) | 363, 540, 718, 1014, 1209 |
| BsoBI | CYCGRG | 4 cut(s) | 588, 1015, 1583, 1675 |
| Bsp1286I | GDGCHC | 3 cut(s) | 246, 1872, 2797 |
| Bsp1407I | TGTACA | 5 cut(s) | 165, 1955, 2369, 2576, 2645 |
| Bsp143I | GATC | 9 cut(s) | 88, 157, 451, 809, 895, 1105, 1682, 1803, 2725 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 215 |
| BspANI | GGCC | 5 cut(s) | 363, 540, 718, 1014, 1209 |
| BspCNI | CTCAG | 4 cut(s) | 111, 174, 413, 1315 |
| BspDI | ATCGAT | 2 cut(s) | 454, 1806 |
| BspHI | TCATGA | 2 cut(s) | 1066, 2728 |
| BspLI | GGNNCC | 4 cut(s) | 396, 717, 1674, 1814 |
| BspMAI | CTGCAG | 1 cut(s) | 350 |
| BspMI | ACCTGC | 1 cut(s) | 1286 |
| BspPI | GGATC | 2 cut(s) | 1811, 2733 |
| BspT107I | GGYRCC | 1 cut(s) | 1812 |
| BspTI | CTTAAG | 2 cut(s) | 1981, 2671 |
| BsrFI | RCCGGY | 1 cut(s) | 540 |
| BsrGI | TGTACA | 5 cut(s) | 165, 1955, 2369, 2576, 2645 |
| BsrI | ACTGG | 2 cut(s) | 51, 333 |
| BssAI | RCCGGY | 1 cut(s) | 540 |
| BssECI | CCNNGG | 5 cut(s) | 681, 1015, 1204, 1583, 1676 |
| BssMI | GATC | 9 cut(s) | 88, 157, 451, 809, 895, 1105, 1682, 1803, 2725 |
| BssT1I | CCWWGG | 1 cut(s) | 1204 |
| Bst2UI | CCWGG | 1 cut(s) | 720 |
| Bst4CI | ACNGT | 2 cut(s) | 1902, 2823 |
| BstAFI | CTTAAG | 2 cut(s) | 1981, 2671 |
| BstAUI | TGTACA | 5 cut(s) | 165, 1955, 2369, 2576, 2645 |
| BstC8I | GCNNGC | 7 cut(s) | 14, 1133, 1137, 1384, 1404, 1435, 2227 |
| BstF5I | GGATG | 8 cut(s) | 527, 628, 995, 1527, 1958, 2372, 2579, 2648 |
| BstKTI | GATC | 9 cut(s) | 91, 160, 454, 812, 898, 1108, 1685, 1806, 2728 |
| BstMAI | GTCTC | 3 cut(s) | 542, 838, 1582 |
| BstMBI | GATC | 9 cut(s) | 88, 157, 451, 809, 895, 1105, 1682, 1803, 2725 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 13, 705 |
| BstNI | CCWGG | 1 cut(s) | 720 |
| BstNSI | RCATGY | 3 cut(s) | 1139, 1190, 1938 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 963 |
| BstSCI | CCNGG | 5 cut(s) | 718, 1014, 1015, 1582, 1583 |
| BstSFI | CTRYAG | 1 cut(s) | 346 |
| BstV1I | GCAGC | 7 cut(s) | 56, 59, 518, 1418, 1461, 1605, 2803 |
| BstV2I | GAAGAC | 2 cut(s) | 234, 277 |
| BstX2I | RGATCY | 1 cut(s) | 809 |
| BstYI | RGATCY | 1 cut(s) | 809 |
| Bsu15I | ATCGAT | 2 cut(s) | 454, 1806 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1302 |
| BsuI | GTATCC | 1 cut(s) | 130 |
| BsuRI | GGCC | 5 cut(s) | 363, 540, 718, 1014, 1209 |
| BsuTUI | ATCGAT | 2 cut(s) | 454, 1806 |
| BtrI | CACGTC | 1 cut(s) | 961 |
| BtsCI | GGATG | 8 cut(s) | 527, 628, 995, 1527, 1958, 2372, 2579, 2648 |
| BtsI | GCAGTG | 2 cut(s) | 895, 2833 |
| BtsIMutI | CAGTG | 2 cut(s) | 895, 2833 |
| BveI | ACCTGC | 1 cut(s) | 1286 |
| Cac8I | GCNNGC | 7 cut(s) | 14, 1133, 1137, 1384, 1404, 1435, 2227 |
| CciI | TCATGA | 2 cut(s) | 1066, 2728 |
| Cfr10I | RCCGGY | 1 cut(s) | 540 |
| Cfr13I | GGNCC | 5 cut(s) | 538, 716, 1013, 1298, 1672 |
| Cfr9I | CCCGGG | 2 cut(s) | 1015, 1583 |
| ClaI | ATCGAT | 2 cut(s) | 454, 1806 |
| CseI | GACGC | 2 cut(s) | 443, 1599 |
| Csp6I | GTAC | 9 cut(s) | 166, 407, 544, 1647, 1813, 1956, 2370, 2577, 2646 |
| CviQI | GTAC | 9 cut(s) | 166, 407, 544, 1647, 1813, 1956, 2370, 2577, 2646 |
| DpnI | GATC | 9 cut(s) | 90, 159, 453, 811, 897, 1107, 1684, 1805, 2727 |
| DpnII | GATC | 9 cut(s) | 88, 157, 451, 809, 895, 1105, 1682, 1803, 2725 |
| DraI | TTTAAA | 3 cut(s) | 675, 1393, 2430 |
| DriI | GACNNNNNGTC | 1 cut(s) | 659 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 659 |
| Ecl136II | GAGCTC | 2 cut(s) | 244, 1870 |
| Eco130I | CCWWGG | 1 cut(s) | 1204 |
| Eco147I | AGGCCT | 1 cut(s) | 1209 |
| Eco24I | GRGCYC | 3 cut(s) | 246, 1872, 2797 |
| Eco47I | GGWCC | 2 cut(s) | 1298, 1672 |
| Eco53kI | GAGCTC | 2 cut(s) | 244, 1870 |
| Eco57I | CTGAAG | 2 cut(s) | 184, 2054 |
| Eco81I | CCTNAGG | 1 cut(s) | 1302 |
| Eco88I | CYCGRG | 4 cut(s) | 588, 1015, 1583, 1675 |
| EcoICRI | GAGCTC | 2 cut(s) | 244, 1870 |
| EcoO109I | RGGNCCY | 3 cut(s) | 716, 1298, 1672 |
| EcoRI | GAATTC | 1 cut(s) | 1026 |
| EcoRII | CCWGG | 1 cut(s) | 718 |
| EcoT14I | CCWWGG | 1 cut(s) | 1204 |
| EcoT22I | ATGCAT | 2 cut(s) | 1141, 1527 |
| EcoT38I | GRGCYC | 3 cut(s) | 246, 1872, 2797 |
| ErhI | CCWWGG | 1 cut(s) | 1204 |
| Esp3I | CGTCTC | 1 cut(s) | 1582 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 831, 863 |
| FaqI | GGGAC | 3 cut(s) | 881, 1658, 1923 |
| FauNDI | CATATG | 1 cut(s) | 710 |
| FbaI | TGATCA | 1 cut(s) | 895 |
| FblI | GTMKAC | 2 cut(s) | 652, 1620 |
| Fnu4HI | GCNGC | 7 cut(s) | 45, 48, 507, 1407, 1475, 1594, 2817 |
| FokI | GGATG | 8 cut(s) | 534, 615, 982, 1534, 1945, 2359, 2566, 2635 |
| FriOI | GRGCYC | 3 cut(s) | 246, 1872, 2797 |
| Fsp4HI | GCNGC | 7 cut(s) | 45, 48, 507, 1407, 1475, 1594, 2817 |
| FspBI | CTAG | 5 cut(s) | 786, 827, 1172, 1346, 1427 |
| GluI | GCNGC | 7 cut(s) | 45, 48, 507, 1407, 1475, 1594, 2817 |
| HaeIII | GGCC | 5 cut(s) | 363, 540, 718, 1014, 1209 |
| HapII | CCGG | 3 cut(s) | 541, 1016, 1584 |
| HgaI | GACGC | 2 cut(s) | 443, 1599 |
| HincII | GTYRAC | 1 cut(s) | 2761 |
| HindII | GTYRAC | 1 cut(s) | 2761 |
| HindIII | AAGCTT | 3 cut(s) | 212, 1431, 1711 |
| HpaII | CCGG | 3 cut(s) | 541, 1016, 1584 |
| HphI | GGTGA | 4 cut(s) | 443, 895, 1468, 1563 |
| Hpy166II | GTNNAC | 5 cut(s) | 585, 598, 653, 1621, 2761 |
| Hpy188I | TCNGA | 5 cut(s) | 33, 183, 203, 403, 1720 |
| Hpy8I | GTNNAC | 5 cut(s) | 585, 598, 653, 1621, 2761 |
| Hpy99I | CGWCG | 1 cut(s) | 284 |
| HpyAV | CCTTC | 6 cut(s) | 208, 612, 1220, 2029, 2756, 2791 |
| HpyCH4III | ACNGT | 2 cut(s) | 1902, 2823 |
| HpyCH4IV | ACGT | 5 cut(s) | 618, 960, 1051, 1626, 1912 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 13, 705 |
| HpySE526I | ACGT | 5 cut(s) | 618, 960, 1051, 1626, 1912 |
| KpnI | GGTACC | 1 cut(s) | 1816 |
| Ksp22I | TGATCA | 1 cut(s) | 895 |
| Kzo9I | GATC | 9 cut(s) | 88, 157, 451, 809, 895, 1105, 1682, 1803, 2725 |
| LmnI | GCTCC | 5 cut(s) | 4, 241, 249, 1867, 1875 |
| Lsp1109I | GCAGC | 7 cut(s) | 56, 59, 518, 1418, 1461, 1605, 2803 |
| LweI | GCATC | 4 cut(s) | 446, 483, 1330, 1512 |
| MaeI | CTAG | 5 cut(s) | 786, 827, 1172, 1346, 1427 |
| MaeII | ACGT | 5 cut(s) | 618, 960, 1051, 1626, 1912 |
| MaeIII | GTNAC | 4 cut(s) | 431, 1569, 2695, 2828 |
| MalI | GATC | 9 cut(s) | 90, 159, 453, 811, 897, 1107, 1684, 1805, 2727 |
| MboI | GATC | 9 cut(s) | 88, 157, 451, 809, 895, 1105, 1682, 1803, 2725 |
| MfeI | CAATTG | 3 cut(s) | 255, 633, 741 |
| MflI | RGATCY | 1 cut(s) | 809 |
| MhlI | GDGCHC | 3 cut(s) | 246, 1872, 2797 |
| MlyI | GAGTC | 6 cut(s) | 272, 653, 863, 912, 973, 1577 |
| MmeI | TCCRAC | 1 cut(s) | 2610 |
| Mph1103I | ATGCAT | 2 cut(s) | 1141, 1527 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1368 |
| MslI | CAYNNNNRTG | 2 cut(s) | 610, 2430 |
| MspA1I | CMGCKG | 1 cut(s) | 1474 |
| MspCI | CTTAAG | 2 cut(s) | 1981, 2671 |
| MspI | CCGG | 3 cut(s) | 541, 1016, 1584 |
| MspR9I | CCNGG | 5 cut(s) | 720, 1016, 1017, 1584, 1585 |
| MunI | CAATTG | 3 cut(s) | 255, 633, 741 |
| Mva1269I | GAATGC | 4 cut(s) | 930, 1139, 1665, 1708 |
| MvaI | CCWGG | 1 cut(s) | 720 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 13, 705 |
| NciI | CCSGG | 4 cut(s) | 1016, 1017, 1584, 1585 |
| NdeI | CATATG | 1 cut(s) | 710 |
| NdeII | GATC | 9 cut(s) | 88, 157, 451, 809, 895, 1105, 1682, 1803, 2725 |
| NlaIV | GGNNCC | 4 cut(s) | 396, 717, 1674, 1814 |
| NmuCI | GTSAC | 4 cut(s) | 431, 1569, 2695, 2828 |
| NsiI | ATGCAT | 2 cut(s) | 1141, 1527 |
| NspI | RCATGY | 3 cut(s) | 1139, 1190, 1938 |
| PaeI | GCATGC | 1 cut(s) | 1139 |
| PagI | TCATGA | 2 cut(s) | 1066, 2728 |
| PceI | AGGCCT | 1 cut(s) | 1209 |
| PciI | ACATGT | 2 cut(s) | 1186, 1934 |
| PctI | GAATGC | 4 cut(s) | 930, 1139, 1665, 1708 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1368 |
| PkrI | GCNGC | 7 cut(s) | 46, 49, 508, 1408, 1476, 1595, 2818 |
| PleI | GAGTC | 6 cut(s) | 271, 652, 863, 911, 972, 1576 |
| PpsI | GAGTC | 6 cut(s) | 271, 652, 863, 911, 972, 1576 |
| PpuMI | RGGWCCY | 2 cut(s) | 1298, 1672 |
| PscI | ACATGT | 2 cut(s) | 1186, 1934 |
| PshAI | GACNNNNGTC | 1 cut(s) | 963 |
| PsiI | TTATAA | 1 cut(s) | 914 |
| Psp124BI | GAGCTC | 2 cut(s) | 246, 1872 |
| Psp1406I | AACGTT | 1 cut(s) | 1051 |
| Psp5II | RGGWCCY | 2 cut(s) | 1298, 1672 |
| Psp6I | CCWGG | 1 cut(s) | 718 |
| PspGI | CCWGG | 1 cut(s) | 718 |
| PspN4I | GGNNCC | 4 cut(s) | 396, 717, 1674, 1814 |
| PspPI | GGNCC | 5 cut(s) | 538, 716, 1013, 1298, 1672 |
| PspPPI | RGGWCCY | 2 cut(s) | 1298, 1672 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1611, 1643, 1906, 1938 |
| PstI | CTGCAG | 1 cut(s) | 350 |
| PsuI | RGATCY | 1 cut(s) | 809 |
| PvuII | CAGCTG | 1 cut(s) | 1474 |
| RsaI | GTAC | 9 cut(s) | 167, 408, 545, 1648, 1814, 1957, 2371, 2578, 2647 |
| RsaNI | GTAC | 9 cut(s) | 166, 407, 544, 1647, 1813, 1956, 2370, 2577, 2646 |
| RseI | CAYNNNNRTG | 2 cut(s) | 610, 2430 |
| SacI | GAGCTC | 2 cut(s) | 246, 1872 |
| SatI | GCNGC | 7 cut(s) | 45, 48, 507, 1407, 1475, 1594, 2817 |
| Sau3AI | GATC | 9 cut(s) | 88, 157, 451, 809, 895, 1105, 1682, 1803, 2725 |
| Sau96I | GGNCC | 5 cut(s) | 538, 716, 1013, 1298, 1672 |
| SchI | GAGTC | 6 cut(s) | 272, 653, 863, 912, 973, 1577 |
| ScrFI | CCNGG | 5 cut(s) | 720, 1016, 1017, 1584, 1585 |
| SduI | GDGCHC | 3 cut(s) | 246, 1872, 2797 |
| SfaNI | GCATC | 4 cut(s) | 446, 483, 1330, 1512 |
| SfcI | CTRYAG | 1 cut(s) | 346 |
| SinI | GGWCC | 2 cut(s) | 1298, 1672 |
| SmaI | CCCGGG | 2 cut(s) | 1017, 1585 |
| SmiI | ATTTAAAT | 1 cut(s) | 2430 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 610, 2430 |
| SpeI | ACTAGT | 1 cut(s) | 785 |
| SphI | GCATGC | 1 cut(s) | 1139 |
| SrfI | GCCCGGGC | 1 cut(s) | 1017 |
| SseBI | AGGCCT | 1 cut(s) | 1209 |
| SspI | AATATT | 2 cut(s) | 22, 691 |
| SspMI | CTAG | 5 cut(s) | 786, 827, 1172, 1346, 1427 |
| SstI | GAGCTC | 2 cut(s) | 246, 1872 |
| StuI | AGGCCT | 1 cut(s) | 1209 |
| StyD4I | CCNGG | 5 cut(s) | 718, 1014, 1015, 1582, 1583 |
| StyI | CCWWGG | 1 cut(s) | 1204 |
| SwaI | ATTTAAAT | 1 cut(s) | 2430 |
| TaaI | ACNGT | 2 cut(s) | 1902, 2823 |
| TaiI | ACGT | 5 cut(s) | 621, 963, 1054, 1629, 1915 |
| TaqI | TCGA | 4 cut(s) | 127, 454, 1806, 1842 |
| TatI | WGTACW | 5 cut(s) | 165, 1955, 2369, 2576, 2645 |
| TscAI | CASTG | 2 cut(s) | 895, 2833 |
| TseFI | GTSAC | 4 cut(s) | 431, 1569, 2695, 2828 |
| TseI | GCWGC | 7 cut(s) | 44, 47, 506, 1406, 1474, 1593, 2816 |
| Tsp45I | GTSAC | 4 cut(s) | 431, 1569, 2695, 2828 |
| TspGWI | ACGGA | 1 cut(s) | 1812 |
| TspMI | CCCGGG | 2 cut(s) | 1015, 1583 |
| TspRI | CASTG | 2 cut(s) | 895, 2833 |
| Vha464I | CTTAAG | 2 cut(s) | 1981, 2671 |
| VpaK11BI | GGWCC | 2 cut(s) | 1298, 1672 |
| XapI | RAATTY | 9 cut(s) | 554, 874, 1026, 1942, 2011, 2080, 2149, 2218, 2287 |
| XbaI | TCTAGA | 1 cut(s) | 1171 |
| XceI | RCATGY | 3 cut(s) | 1139, 1190, 1938 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1880 |
| XmaI | CCCGGG | 2 cut(s) | 1015, 1583 |
| XmiI | GTMKAC | 2 cut(s) | 652, 1620 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1368 |
| XspI | CTAG | 5 cut(s) | 786, 827, 1172, 1346, 1427 |
| Zsp2I | ATGCAT | 2 cut(s) | 1141, 1527 |