TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRR_Zer-1 | PF25013 | 163 - 288 | 1.6e-08 | Zer-1-like, Leucine-rich repeats |
| LRR_14 | PF23598 | 165 - 226 | 3.9e-08 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 213 - 399 | 4.2e-29 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 239 - 297 | 6.9e-07 | Leucine-rich repeat region |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 638 |
| AccB1I | GGYRCC | 1 cut(s) | 740 |
| AccII | CGCG | 1 cut(s) | 619 |
| AccIII | TCCGGA | 1 cut(s) | 1138 |
| AciI | CCGC | 5 cut(s) | 617, 738, 1099, 1223, 1253 |
| AclI | AACGTT | 1 cut(s) | 791 |
| AclWI | GGATC | 4 cut(s) | 312, 577, 804, 1138 |
| AcsI | RAATTY | 6 cut(s) | 211, 235, 470, 507, 693, 1134 |
| AcuI | CTGAAG | 1 cut(s) | 878 |
| AfaI | GTAC | 3 cut(s) | 250, 1031, 1112 |
| AfeI | AGCGCT | 1 cut(s) | 1288 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 948, 1153, 1326 |
| AflIII | ACRYGT | 1 cut(s) | 915 |
| AgsI | TTSAA | 5 cut(s) | 219, 295, 376, 788, 922 |
| AjnI | CCWGG | 2 cut(s) | 422, 1325 |
| AleI | CACNNNNGTG | 1 cut(s) | 1170 |
| AluBI | AGCT | 7 cut(s) | 160, 440, 463, 634, 865, 871, 946 |
| AluI | AGCT | 7 cut(s) | 160, 440, 463, 634, 865, 871, 946 |
| Alw26I | GTCTC | 1 cut(s) | 1117 |
| AlwI | GGATC | 4 cut(s) | 312, 577, 804, 1138 |
| Aor13HI | TCCGGA | 1 cut(s) | 1138 |
| Aor51HI | AGCGCT | 1 cut(s) | 1288 |
| AoxI | GGCC | 2 cut(s) | 101, 1277 |
| ApeKI | GCWGC | 5 cut(s) | 387, 634, 680, 834, 862 |
| ApoI | RAATTY | 6 cut(s) | 211, 235, 470, 507, 693, 1134 |
| AspLEI | GCGC | 2 cut(s) | 639, 1289 |
| AspS9I | GGNCC | 2 cut(s) | 545, 929 |
| AsuHPI | GGTGA | 2 cut(s) | 412, 1069 |
| AsuII | TTCGAA | 1 cut(s) | 358 |
| AvaII | GGWCC | 2 cut(s) | 545, 929 |
| AxyI | CCTNAGG | 1 cut(s) | 587 |
| BaeGI | GKGCMC | 1 cut(s) | 671 |
| BanI | GGYRCC | 1 cut(s) | 740 |
| BanII | GRGCYC | 1 cut(s) | 573 |
| BbsI | GAAGAC | 1 cut(s) | 1055 |
| BbvI | GCAGC | 5 cut(s) | 374, 621, 667, 846, 874 |
| BccI | CCATC | 5 cut(s) | 136, 487, 700, 752, 940 |
| BceAI | ACGGC | 1 cut(s) | 400 |
| BciT130I | CCWGG | 2 cut(s) | 424, 1327 |
| BciVI | GTATCC | 1 cut(s) | 417 |
| BcoDI | GTCTC | 1 cut(s) | 1117 |
| BfoI | RGCGCY | 1 cut(s) | 1290 |
| BfuI | GTATCC | 1 cut(s) | 417 |
| BisI | GCNGC | 7 cut(s) | 388, 617, 635, 681, 835, 863, 1100 |
| BlsI | GCNGC | 7 cut(s) | 389, 618, 636, 682, 836, 864, 1101 |
| Bme1390I | CCNGG | 2 cut(s) | 424, 1327 |
| Bme18I | GGWCC | 2 cut(s) | 545, 929 |
| BmgT120I | GGNCC | 2 cut(s) | 545, 929 |
| BmiI | GGNNCC | 4 cut(s) | 336, 499, 546, 742 |
| BmrFI | CCNGG | 2 cut(s) | 424, 1327 |
| BmrI | ACTGGG | 1 cut(s) | 576 |
| BmsI | GCATC | 3 cut(s) | 646, 959, 1083 |
| BmuI | ACTGGG | 1 cut(s) | 576 |
| BpiI | GAAGAC | 1 cut(s) | 1055 |
| BpmI | CTGGAG | 3 cut(s) | 78, 1208, 1233 |
| Bpu14I | TTCGAA | 1 cut(s) | 358 |
| BpuEI | CTTGAG | 5 cut(s) | 295, 485, 523, 736, 887 |
| BsaJI | CCNNGG | 3 cut(s) | 178, 964, 1325 |
| BsaWI | WCCGGW | 1 cut(s) | 1138 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 948, 1153, 1326 |
| Bse1I | ACTGG | 5 cut(s) | 82, 571, 979, 1191, 1280 |
| Bse21I | CCTNAGG | 1 cut(s) | 587 |
| BseAI | TCCGGA | 1 cut(s) | 1138 |
| BseBI | CCWGG | 2 cut(s) | 424, 1327 |
| BseDI | CCNNGG | 3 cut(s) | 178, 964, 1325 |
| BseGI | GGATG | 3 cut(s) | 251, 763, 974 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 948, 1153, 1326 |
| BseNI | ACTGG | 5 cut(s) | 82, 571, 979, 1191, 1280 |
| BseSI | GKGCMC | 1 cut(s) | 671 |
| BseXI | GCAGC | 5 cut(s) | 374, 621, 667, 846, 874 |
| BseYI | CCCAGC | 2 cut(s) | 1014, 1283 |
| BsgI | GTGCAG | 2 cut(s) | 300, 853 |
| Bsh1236I | CGCG | 1 cut(s) | 619 |
| BshFI | GGCC | 2 cut(s) | 103, 1279 |
| BshNI | GGYRCC | 1 cut(s) | 740 |
| BsiSI | CCGG | 1 cut(s) | 1139 |
| BslFI | GGGAC | 2 cut(s) | 216, 269 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 948, 1153, 1326 |
| BsmAI | GTCTC | 1 cut(s) | 1117 |
| BsmFI | GGGAC | 2 cut(s) | 216, 269 |
| BsmI | GAATGC | 1 cut(s) | 53 |
| BsnI | GGCC | 2 cut(s) | 103, 1279 |
| Bsp119I | TTCGAA | 1 cut(s) | 358 |
| Bsp1286I | GDGCHC | 2 cut(s) | 573, 671 |
| Bsp13I | TCCGGA | 1 cut(s) | 1138 |
| Bsp1407I | TGTACA | 1 cut(s) | 248 |
| Bsp143I | GATC | 4 cut(s) | 304, 582, 796, 1143 |
| BspACI | CCGC | 5 cut(s) | 617, 738, 1099, 1223, 1253 |
| BspANI | GGCC | 2 cut(s) | 103, 1279 |
| BspEI | TCCGGA | 1 cut(s) | 1138 |
| BspFNI | CGCG | 1 cut(s) | 619 |
| BspHI | TCATGA | 1 cut(s) | 999 |
| BspLI | GGNNCC | 4 cut(s) | 336, 499, 546, 742 |
| BspPI | GGATC | 4 cut(s) | 312, 577, 804, 1138 |
| BspT104I | TTCGAA | 1 cut(s) | 358 |
| BspT107I | GGYRCC | 1 cut(s) | 740 |
| BsrGI | TGTACA | 1 cut(s) | 248 |
| BsrI | ACTGG | 5 cut(s) | 82, 571, 979, 1191, 1280 |
| BssECI | CCNNGG | 3 cut(s) | 178, 964, 1325 |
| BssMI | GATC | 4 cut(s) | 304, 582, 796, 1143 |
| Bst2UI | CCWGG | 2 cut(s) | 424, 1327 |
| Bst4CI | ACNGT | 5 cut(s) | 596, 831, 1029, 1115, 1270 |
| Bst6I | CTCTTC | 2 cut(s) | 570, 1251 |
| BstAUI | TGTACA | 1 cut(s) | 248 |
| BstBI | TTCGAA | 1 cut(s) | 358 |
| BstC8I | GCNNGC | 2 cut(s) | 461, 1072 |
| BstDEI | CTNAG | 3 cut(s) | 11, 587, 1295 |
| BstDSI | CCRYGG | 1 cut(s) | 178 |
| BstF5I | GGATG | 3 cut(s) | 251, 763, 974 |
| BstFNI | CGCG | 1 cut(s) | 619 |
| BstH2I | RGCGCY | 1 cut(s) | 1290 |
| BstHHI | GCGC | 2 cut(s) | 639, 1289 |
| BstKTI | GATC | 4 cut(s) | 307, 585, 799, 1146 |
| BstMAI | GTCTC | 1 cut(s) | 1117 |
| BstMBI | GATC | 4 cut(s) | 304, 582, 796, 1143 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 100, 868 |
| BstNI | CCWGG | 2 cut(s) | 424, 1327 |
| BstNSI | RCATGY | 1 cut(s) | 919 |
| BstSCI | CCNGG | 2 cut(s) | 422, 1325 |
| BstSLI | GKGCMC | 1 cut(s) | 671 |
| BstUI | CGCG | 1 cut(s) | 619 |
| BstV1I | GCAGC | 5 cut(s) | 374, 621, 667, 846, 874 |
| BstV2I | GAAGAC | 1 cut(s) | 1055 |
| BstX2I | RGATCY | 3 cut(s) | 304, 796, 1143 |
| BstYI | RGATCY | 3 cut(s) | 304, 796, 1143 |
| Bsu36I | CCTNAGG | 1 cut(s) | 587 |
| BsuI | GTATCC | 1 cut(s) | 417 |
| BsuRI | GGCC | 2 cut(s) | 103, 1279 |
| BtgI | CCRYGG | 1 cut(s) | 178 |
| BtsCI | GGATG | 3 cut(s) | 251, 763, 974 |
| BtsI | GCAGTG | 1 cut(s) | 671 |
| BtsIMutI | CAGTG | 4 cut(s) | 564, 671, 972, 1184 |
| Cac8I | GCNNGC | 2 cut(s) | 461, 1072 |
| CciI | TCATGA | 1 cut(s) | 999 |
| CfoI | GCGC | 2 cut(s) | 639, 1289 |
| Cfr13I | GGNCC | 2 cut(s) | 545, 929 |
| Csp6I | GTAC | 3 cut(s) | 249, 1030, 1111 |
| CviAII | CATG | 3 cut(s) | 140, 916, 1000 |
| CviQI | GTAC | 3 cut(s) | 249, 1030, 1111 |
| DdeI | CTNAG | 3 cut(s) | 11, 587, 1295 |
| DpnI | GATC | 4 cut(s) | 306, 584, 798, 1145 |
| DpnII | GATC | 4 cut(s) | 304, 582, 796, 1143 |
| Eam1104I | CTCTTC | 2 cut(s) | 570, 1251 |
| EarI | CTCTTC | 2 cut(s) | 570, 1251 |
| EciI | GGCGGA | 1 cut(s) | 1238 |
| Eco24I | GRGCYC | 1 cut(s) | 573 |
| Eco32I | GATATC | 1 cut(s) | 961 |
| Eco47I | GGWCC | 2 cut(s) | 545, 929 |
| Eco47III | AGCGCT | 1 cut(s) | 1288 |
| Eco57I | CTGAAG | 1 cut(s) | 878 |
| Eco81I | CCTNAGG | 1 cut(s) | 587 |
| EcoRII | CCWGG | 2 cut(s) | 422, 1325 |
| EcoRV | GATATC | 1 cut(s) | 961 |
| EcoT38I | GRGCYC | 1 cut(s) | 573 |
| FaeI | CATG | 3 cut(s) | 143, 919, 1003 |
| FaqI | GGGAC | 2 cut(s) | 216, 269 |
| FatI | CATG | 3 cut(s) | 139, 915, 999 |
| Fnu4HI | GCNGC | 7 cut(s) | 388, 617, 635, 681, 835, 863, 1100 |
| FokI | GGATG | 3 cut(s) | 238, 770, 981 |
| FriOI | GRGCYC | 1 cut(s) | 573 |
| Fsp4HI | GCNGC | 7 cut(s) | 388, 617, 635, 681, 835, 863, 1100 |
| FspI | TGCGCA | 1 cut(s) | 638 |
| GlaI | GCGC | 2 cut(s) | 638, 1288 |
| GluI | GCNGC | 7 cut(s) | 388, 617, 635, 681, 835, 863, 1100 |
| GsaI | CCCAGC | 2 cut(s) | 1018, 1287 |
| GsuI | CTGGAG | 3 cut(s) | 78, 1208, 1233 |
| HaeII | RGCGCY | 1 cut(s) | 1290 |
| HaeIII | GGCC | 2 cut(s) | 103, 1279 |
| HapII | CCGG | 1 cut(s) | 1139 |
| HhaI | GCGC | 2 cut(s) | 639, 1289 |
| Hin1II | CATG | 3 cut(s) | 143, 919, 1003 |
| Hin6I | GCGC | 2 cut(s) | 637, 1287 |
| HinP1I | GCGC | 2 cut(s) | 637, 1287 |
| HincII | GTYRAC | 3 cut(s) | 382, 1090, 1273 |
| HindII | GTYRAC | 3 cut(s) | 382, 1090, 1273 |
| HindIII | AAGCTT | 1 cut(s) | 461 |
| HpaI | GTTAAC | 1 cut(s) | 1273 |
| HpaII | CCGG | 1 cut(s) | 1139 |
| HphI | GGTGA | 2 cut(s) | 412, 1069 |
| Hpy166II | GTNNAC | 4 cut(s) | 382, 1090, 1159, 1273 |
| Hpy8I | GTNNAC | 4 cut(s) | 382, 1090, 1159, 1273 |
| HpyAV | CCTTC | 1 cut(s) | 365 |
| HpyCH4III | ACNGT | 5 cut(s) | 596, 831, 1029, 1115, 1270 |
| HpyCH4IV | ACGT | 2 cut(s) | 205, 791 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 100, 868 |
| HpyF3I | CTNAG | 3 cut(s) | 11, 587, 1295 |
| HpySE526I | ACGT | 2 cut(s) | 205, 791 |
| Hsp92II | CATG | 3 cut(s) | 143, 919, 1003 |
| HspAI | GCGC | 2 cut(s) | 637, 1287 |
| Kpn2I | TCCGGA | 1 cut(s) | 1138 |
| KspAI | GTTAAC | 1 cut(s) | 1273 |
| Kzo9I | GATC | 4 cut(s) | 304, 582, 796, 1143 |
| Lsp1109I | GCAGC | 5 cut(s) | 374, 621, 667, 846, 874 |
| LweI | GCATC | 3 cut(s) | 646, 959, 1083 |
| MaeII | ACGT | 2 cut(s) | 205, 791 |
| MaeIII | GTNAC | 1 cut(s) | 875 |
| MalI | GATC | 4 cut(s) | 306, 584, 798, 1145 |
| MboI | GATC | 4 cut(s) | 304, 582, 796, 1143 |
| MboII | GAAGA | 5 cut(s) | 16, 45, 587, 1055, 1268 |
| MfeI | CAATTG | 1 cut(s) | 765 |
| MflI | RGATCY | 3 cut(s) | 304, 796, 1143 |
| MhlI | GDGCHC | 2 cut(s) | 573, 671 |
| MlyI | GAGTC | 4 cut(s) | 770, 997, 1119, 1235 |
| MmeI | TCCRAC | 6 cut(s) | 102, 282, 328, 774, 926, 936 |
| MroI | TCCGGA | 1 cut(s) | 1138 |
| MseI | TTAA | 4 cut(s) | 96, 239, 534, 1272 |
| MslI | CAYNNNNRTG | 2 cut(s) | 193, 1170 |
| MspA1I | CMGCKG | 1 cut(s) | 1253 |
| MspI | CCGG | 1 cut(s) | 1139 |
| MspR9I | CCNGG | 2 cut(s) | 424, 1327 |
| MunI | CAATTG | 1 cut(s) | 765 |
| Mva1269I | GAATGC | 1 cut(s) | 53 |
| MvaI | CCWGG | 2 cut(s) | 424, 1327 |
| MvnI | CGCG | 1 cut(s) | 619 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 100, 868 |
| NdeII | GATC | 4 cut(s) | 304, 582, 796, 1143 |
| NlaIII | CATG | 3 cut(s) | 143, 919, 1003 |
| NlaIV | GGNNCC | 4 cut(s) | 336, 499, 546, 742 |
| NsbI | TGCGCA | 1 cut(s) | 638 |
| NspI | RCATGY | 1 cut(s) | 919 |
| NspV | TTCGAA | 1 cut(s) | 358 |
| OliI | CACNNNNGTG | 1 cut(s) | 1170 |
| PagI | TCATGA | 1 cut(s) | 999 |
| PciI | ACATGT | 1 cut(s) | 915 |
| PctI | GAATGC | 1 cut(s) | 53 |
| PfeI | GAWTC | 6 cut(s) | 7, 183, 341, 351, 1194, 1333 |
| PkrI | GCNGC | 7 cut(s) | 389, 618, 636, 682, 836, 864, 1101 |
| PleI | GAGTC | 4 cut(s) | 769, 997, 1119, 1234 |
| PpsI | GAGTC | 4 cut(s) | 769, 997, 1119, 1234 |
| PscI | ACATGT | 1 cut(s) | 915 |
| Psp1406I | AACGTT | 1 cut(s) | 791 |
| Psp6I | CCWGG | 2 cut(s) | 422, 1325 |
| PspFI | CCCAGC | 2 cut(s) | 1014, 1283 |
| PspGI | CCWGG | 2 cut(s) | 422, 1325 |
| PspN4I | GGNNCC | 4 cut(s) | 336, 499, 546, 742 |
| PspPI | GGNCC | 2 cut(s) | 545, 929 |
| PsuI | RGATCY | 3 cut(s) | 304, 796, 1143 |
| RsaI | GTAC | 3 cut(s) | 250, 1031, 1112 |
| RsaNI | GTAC | 3 cut(s) | 249, 1030, 1111 |
| RseI | CAYNNNNRTG | 2 cut(s) | 193, 1170 |
| SaqAI | TTAA | 4 cut(s) | 96, 239, 534, 1272 |
| SatI | GCNGC | 7 cut(s) | 388, 617, 635, 681, 835, 863, 1100 |
| Sau3AI | GATC | 4 cut(s) | 304, 582, 796, 1143 |
| Sau96I | GGNCC | 2 cut(s) | 545, 929 |
| SchI | GAGTC | 4 cut(s) | 770, 997, 1119, 1235 |
| ScrFI | CCNGG | 2 cut(s) | 424, 1327 |
| SduI | GDGCHC | 2 cut(s) | 573, 671 |
| SfaNI | GCATC | 3 cut(s) | 646, 959, 1083 |
| SfuI | TTCGAA | 1 cut(s) | 358 |
| SinI | GGWCC | 2 cut(s) | 545, 929 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 193, 1170 |
| SmlI | CTYRAG | 5 cut(s) | 274, 464, 502, 715, 866 |
| SmoI | CTYRAG | 5 cut(s) | 274, 464, 502, 715, 866 |
| SsiI | CCGC | 5 cut(s) | 617, 738, 1099, 1223, 1253 |
| SspI | AATATT | 1 cut(s) | 166 |
| StyD4I | CCNGG | 2 cut(s) | 422, 1325 |
| TaaI | ACNGT | 5 cut(s) | 596, 831, 1029, 1115, 1270 |
| TaiI | ACGT | 2 cut(s) | 208, 794 |
| TaqI | TCGA | 3 cut(s) | 358, 573, 884 |
| TaqII | GACCGA | 1 cut(s) | 917 |
| TatI | WGTACW | 1 cut(s) | 248 |
| TauI | GCSGC | 2 cut(s) | 619, 1102 |
| TfiI | GAWTC | 6 cut(s) | 7, 183, 341, 351, 1194, 1333 |
| Tru1I | TTAA | 4 cut(s) | 96, 239, 534, 1272 |
| Tru9I | TTAA | 4 cut(s) | 96, 239, 534, 1272 |
| TscAI | CASTG | 4 cut(s) | 571, 671, 979, 1191 |
| TseI | GCWGC | 5 cut(s) | 387, 634, 680, 834, 862 |
| TspDTI | ATGAA | 5 cut(s) | 17, 60, 128, 248, 327 |
| TspGWI | ACGGA | 6 cut(s) | 45, 102, 195, 334, 537, 964 |
| TspRI | CASTG | 4 cut(s) | 571, 671, 979, 1191 |
| VpaK11BI | GGWCC | 2 cut(s) | 545, 929 |
| XapI | RAATTY | 6 cut(s) | 211, 235, 470, 507, 693, 1134 |
| XceI | RCATGY | 1 cut(s) | 919 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 751 |