TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SRF-TF | PF00319 | 11 - 50 | 5.2e-14 | SRF-type transcription factor (DNA-binding and dimerisation domain) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 222 |
| AccB1I | GGYRCC | 2 cut(s) | 526, 670 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 692 |
| AciI | CCGC | 5 cut(s) | 181, 205, 235, 510, 749 |
| AclWI | GGATC | 3 cut(s) | 196, 312, 436 |
| AcoI | YGGCCR | 1 cut(s) | 551 |
| AcsI | RAATTY | 2 cut(s) | 561, 706 |
| AdeI | CACNNNGTG | 1 cut(s) | 114 |
| AfaI | GTAC | 1 cut(s) | 797 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 692 |
| AgsI | TTSAA | 1 cut(s) | 64 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 252 |
| AjnI | CCWGG | 2 cut(s) | 223, 531 |
| AluBI | AGCT | 3 cut(s) | 60, 103, 473 |
| AluI | AGCT | 3 cut(s) | 60, 103, 473 |
| AlwI | GGATC | 3 cut(s) | 196, 312, 436 |
| AoxI | GGCC | 3 cut(s) | 173, 551, 916 |
| ApeKI | GCWGC | 3 cut(s) | 654, 808, 911 |
| ApoI | RAATTY | 2 cut(s) | 561, 706 |
| AseI | ATTAAT | 1 cut(s) | 393 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 452 |
| AspA2I | CCTAGG | 1 cut(s) | 5 |
| AspLEI | GCGC | 2 cut(s) | 219, 354 |
| AspS9I | GGNCC | 1 cut(s) | 479 |
| AsuHPI | GGTGA | 5 cut(s) | 590, 728, 734, 911, 917 |
| AvaII | GGWCC | 1 cut(s) | 479 |
| AvrII | CCTAGG | 1 cut(s) | 5 |
| AxyI | CCTNAGG | 1 cut(s) | 744 |
| BaeGI | GKGCMC | 2 cut(s) | 531, 675 |
| BalI | TGGCCA | 1 cut(s) | 553 |
| BanI | GGYRCC | 2 cut(s) | 526, 670 |
| BbsI | GAAGAC | 1 cut(s) | 251 |
| BbvI | GCAGC | 3 cut(s) | 666, 795, 898 |
| BccI | CCATC | 5 cut(s) | 575, 713, 719, 784, 855 |
| BceAI | ACGGC | 1 cut(s) | 358 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 107, 141 |
| BciT130I | CCWGG | 2 cut(s) | 225, 533 |
| BfaI | CTAG | 4 cut(s) | 6, 12, 48, 483 |
| BfmI | CTRYAG | 1 cut(s) | 912 |
| BfuAI | ACCTGC | 1 cut(s) | 222 |
| BisI | GCNGC | 3 cut(s) | 655, 809, 912 |
| BlnI | CCTAGG | 1 cut(s) | 5 |
| BlpI | GCTNAGC | 1 cut(s) | 104 |
| BlsI | GCNGC | 3 cut(s) | 656, 810, 913 |
| Bme1390I | CCNGG | 2 cut(s) | 225, 533 |
| Bme18I | GGWCC | 1 cut(s) | 479 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 252 |
| BmgT120I | GGNCC | 1 cut(s) | 479 |
| BmiI | GGNNCC | 3 cut(s) | 528, 672, 886 |
| BmrFI | CCNGG | 2 cut(s) | 225, 533 |
| BmrI | ACTGGG | 1 cut(s) | 783 |
| BmsI | GCATC | 2 cut(s) | 795, 898 |
| BmuI | ACTGGG | 1 cut(s) | 783 |
| BpiI | GAAGAC | 1 cut(s) | 251 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 104 |
| BpuEI | CTTGAG | 1 cut(s) | 254 |
| BsaJI | CCNNGG | 4 cut(s) | 5, 355, 531, 532 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 28, 58 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 692 |
| Bse118I | RCCGGY | 1 cut(s) | 896 |
| Bse1I | ACTGG | 4 cut(s) | 451, 492, 544, 778 |
| Bse21I | CCTNAGG | 1 cut(s) | 744 |
| Bse3DI | GCAATG | 1 cut(s) | 769 |
| BseBI | CCWGG | 2 cut(s) | 225, 533 |
| BseDI | CCNNGG | 4 cut(s) | 5, 355, 531, 532 |
| BseGI | GGATG | 3 cut(s) | 346, 810, 866 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 692 |
| BseMI | GCAATG | 1 cut(s) | 769 |
| BseMII | CTCAG | 4 cut(s) | 242, 328, 456, 758 |
| BseNI | ACTGG | 4 cut(s) | 451, 492, 544, 778 |
| BseRI | GAGGAG | 1 cut(s) | 440 |
| BseSI | GKGCMC | 2 cut(s) | 531, 675 |
| BseXI | GCAGC | 3 cut(s) | 666, 795, 898 |
| BshFI | GGCC | 3 cut(s) | 175, 553, 918 |
| BshNI | GGYRCC | 2 cut(s) | 526, 670 |
| BsiSI | CCGG | 1 cut(s) | 897 |
| BslFI | GGGAC | 1 cut(s) | 550 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 692 |
| BsmFI | GGGAC | 1 cut(s) | 550 |
| BsnI | GGCC | 3 cut(s) | 175, 553, 918 |
| Bsp1286I | GDGCHC | 2 cut(s) | 531, 675 |
| Bsp143I | GATC | 5 cut(s) | 96, 201, 317, 343, 441 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 104 |
| BspACI | CCGC | 5 cut(s) | 181, 205, 235, 510, 749 |
| BspANI | GGCC | 3 cut(s) | 175, 553, 918 |
| BspCNI | CTCAG | 4 cut(s) | 243, 327, 457, 757 |
| BspLI | GGNNCC | 3 cut(s) | 528, 672, 886 |
| BspMAI | CTGCAG | 1 cut(s) | 916 |
| BspMI | ACCTGC | 1 cut(s) | 222 |
| BspPI | GGATC | 3 cut(s) | 196, 312, 436 |
| BspT107I | GGYRCC | 2 cut(s) | 526, 670 |
| BsrDI | GCAATG | 1 cut(s) | 769 |
| BsrFI | RCCGGY | 1 cut(s) | 896 |
| BsrI | ACTGG | 4 cut(s) | 451, 492, 544, 778 |
| BssAI | RCCGGY | 1 cut(s) | 896 |
| BssECI | CCNNGG | 4 cut(s) | 5, 355, 531, 532 |
| BssMI | GATC | 5 cut(s) | 96, 201, 317, 343, 441 |
| BssT1I | CCWWGG | 2 cut(s) | 5, 355 |
| Bst2UI | CCWGG | 2 cut(s) | 225, 533 |
| Bst4CI | ACNGT | 2 cut(s) | 80, 893 |
| Bst6I | CTCTTC | 1 cut(s) | 288 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 114 |
| BstC8I | GCNNGC | 4 cut(s) | 58, 126, 471, 916 |
| BstDEI | CTNAG | 5 cut(s) | 104, 251, 314, 465, 744 |
| BstEII | GGTNACC | 1 cut(s) | 738 |
| BstF5I | GGATG | 3 cut(s) | 346, 810, 866 |
| BstHHI | GCGC | 2 cut(s) | 219, 354 |
| BstKTI | GATC | 5 cut(s) | 99, 204, 320, 346, 444 |
| BstMBI | GATC | 5 cut(s) | 96, 201, 317, 343, 441 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 53, 114, 893 |
| BstNI | CCWGG | 2 cut(s) | 225, 533 |
| BstPI | GGTNACC | 1 cut(s) | 738 |
| BstSCI | CCNGG | 2 cut(s) | 223, 531 |
| BstSFI | CTRYAG | 1 cut(s) | 912 |
| BstSLI | GKGCMC | 2 cut(s) | 531, 675 |
| BstV1I | GCAGC | 3 cut(s) | 666, 795, 898 |
| BstV2I | GAAGAC | 1 cut(s) | 251 |
| BstX2I | RGATCY | 2 cut(s) | 317, 441 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 520 |
| BstYI | RGATCY | 2 cut(s) | 317, 441 |
| Bsu36I | CCTNAGG | 1 cut(s) | 744 |
| BsuRI | GGCC | 3 cut(s) | 175, 553, 918 |
| BtgZI | GCGATG | 1 cut(s) | 132 |
| BtsCI | GGATG | 3 cut(s) | 346, 810, 866 |
| BtsI | GCAGTG | 1 cut(s) | 664 |
| BtsIMutI | CAGTG | 3 cut(s) | 499, 664, 898 |
| BveI | ACCTGC | 1 cut(s) | 222 |
| Cac8I | GCNNGC | 4 cut(s) | 58, 126, 471, 916 |
| CfoI | GCGC | 2 cut(s) | 219, 354 |
| Cfr10I | RCCGGY | 1 cut(s) | 896 |
| Cfr13I | GGNCC | 1 cut(s) | 479 |
| CseI | GACGC | 1 cut(s) | 256 |
| CsiI | ACCWGGT | 1 cut(s) | 223 |
| Csp6I | GTAC | 1 cut(s) | 796 |
| CviAII | CATG | 3 cut(s) | 27, 337, 349 |
| CviQI | GTAC | 1 cut(s) | 796 |
| DdeI | CTNAG | 5 cut(s) | 104, 251, 314, 465, 744 |
| DpnI | GATC | 5 cut(s) | 98, 203, 319, 345, 443 |
| DpnII | GATC | 5 cut(s) | 96, 201, 317, 343, 441 |
| DraIII | CACNNNGTG | 1 cut(s) | 114 |
| DriI | GACNNNNNGTC | 1 cut(s) | 252 |
| EaeI | YGGCCR | 1 cut(s) | 551 |
| Eam1104I | CTCTTC | 1 cut(s) | 288 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 252 |
| EarI | CTCTTC | 1 cut(s) | 288 |
| EciI | GGCGGA | 1 cut(s) | 764 |
| Eco130I | CCWWGG | 2 cut(s) | 5, 355 |
| Eco147I | AGGCCT | 1 cut(s) | 918 |
| Eco47I | GGWCC | 1 cut(s) | 479 |
| Eco81I | CCTNAGG | 1 cut(s) | 744 |
| Eco91I | GGTNACC | 1 cut(s) | 738 |
| EcoO65I | GGTNACC | 1 cut(s) | 738 |
| EcoRII | CCWGG | 2 cut(s) | 223, 531 |
| EcoT14I | CCWWGG | 2 cut(s) | 5, 355 |
| ErhI | CCWWGG | 2 cut(s) | 5, 355 |
| FaeI | CATG | 3 cut(s) | 30, 340, 352 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 66, 98 |
| FaqI | GGGAC | 1 cut(s) | 550 |
| FatI | CATG | 3 cut(s) | 26, 336, 348 |
| FauI | CCCGC | 1 cut(s) | 517 |
| FauNDI | CATATG | 1 cut(s) | 556 |
| Fnu4HI | GCNGC | 3 cut(s) | 655, 809, 912 |
| FokI | GGATG | 3 cut(s) | 353, 817, 873 |
| Fsp4HI | GCNGC | 3 cut(s) | 655, 809, 912 |
| FspBI | CTAG | 4 cut(s) | 6, 12, 48, 483 |
| GlaI | GCGC | 2 cut(s) | 218, 353 |
| GluI | GCNGC | 3 cut(s) | 655, 809, 912 |
| HaeIII | GGCC | 3 cut(s) | 175, 553, 918 |
| HapII | CCGG | 1 cut(s) | 897 |
| HgaI | GACGC | 1 cut(s) | 256 |
| HhaI | GCGC | 2 cut(s) | 219, 354 |
| Hin1II | CATG | 3 cut(s) | 30, 340, 352 |
| Hin6I | GCGC | 2 cut(s) | 217, 352 |
| HinP1I | GCGC | 2 cut(s) | 217, 352 |
| HinfI | GANTC | 1 cut(s) | 253 |
| HpaII | CCGG | 1 cut(s) | 897 |
| HphI | GGTGA | 5 cut(s) | 590, 728, 734, 911, 917 |
| Hpy166II | GTNNAC | 1 cut(s) | 499 |
| Hpy188I | TCNGA | 5 cut(s) | 317, 363, 466, 615, 789 |
| Hpy188III | TCNNGA | 2 cut(s) | 257, 445 |
| Hpy8I | GTNNAC | 1 cut(s) | 499 |
| HpyAV | CCTTC | 2 cut(s) | 271, 896 |
| HpyCH4III | ACNGT | 2 cut(s) | 80, 893 |
| HpyCH4V | TGCA | 3 cut(s) | 26, 240, 914 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 53, 114, 893 |
| HpyF3I | CTNAG | 5 cut(s) | 104, 251, 314, 465, 744 |
| Hsp92II | CATG | 3 cut(s) | 30, 340, 352 |
| HspAI | GCGC | 2 cut(s) | 217, 352 |
| Kzo9I | GATC | 5 cut(s) | 96, 201, 317, 343, 441 |
| LmnI | GCTCC | 1 cut(s) | 884 |
| Lsp1109I | GCAGC | 3 cut(s) | 666, 795, 898 |
| LweI | GCATC | 2 cut(s) | 795, 898 |
| MabI | ACCWGGT | 1 cut(s) | 223 |
| MaeI | CTAG | 4 cut(s) | 6, 12, 48, 483 |
| MaeIII | GTNAC | 5 cut(s) | 155, 263, 485, 695, 738 |
| MalI | GATC | 5 cut(s) | 98, 203, 319, 345, 443 |
| MboI | GATC | 5 cut(s) | 96, 201, 317, 343, 441 |
| MboII | GAAGA | 4 cut(s) | 100, 256, 305, 442 |
| MflI | RGATCY | 2 cut(s) | 317, 441 |
| MhlI | GDGCHC | 2 cut(s) | 531, 675 |
| MlsI | TGGCCA | 1 cut(s) | 553 |
| MluCI | AATT | 2 cut(s) | 561, 706 |
| MluNI | TGGCCA | 1 cut(s) | 553 |
| MlyI | GAGTC | 1 cut(s) | 262 |
| MmeI | TCCRAC | 1 cut(s) | 345 |
| Mox20I | TGGCCA | 1 cut(s) | 553 |
| MroXI | GAANNNNTTC | 1 cut(s) | 452 |
| MscI | TGGCCA | 1 cut(s) | 553 |
| MseI | TTAA | 4 cut(s) | 393, 414, 663, 925 |
| Msp20I | TGGCCA | 1 cut(s) | 553 |
| MspI | CCGG | 1 cut(s) | 897 |
| MspR9I | CCNGG | 2 cut(s) | 225, 533 |
| MvaI | CCWGG | 2 cut(s) | 225, 533 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 53, 114, 893 |
| NdeI | CATATG | 1 cut(s) | 556 |
| NdeII | GATC | 5 cut(s) | 96, 201, 317, 343, 441 |
| NlaIII | CATG | 3 cut(s) | 30, 340, 352 |
| NlaIV | GGNNCC | 3 cut(s) | 528, 672, 886 |
| PasI | CCCWGGG | 1 cut(s) | 532 |
| PceI | AGGCCT | 1 cut(s) | 918 |
| PdmI | GAANNNNTTC | 1 cut(s) | 452 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 692 |
| PkrI | GCNGC | 3 cut(s) | 656, 810, 913 |
| PleI | GAGTC | 1 cut(s) | 261 |
| PpsI | GAGTC | 1 cut(s) | 261 |
| PshBI | ATTAAT | 1 cut(s) | 393 |
| Psp6I | CCWGG | 2 cut(s) | 223, 531 |
| PspEI | GGTNACC | 1 cut(s) | 738 |
| PspGI | CCWGG | 2 cut(s) | 223, 531 |
| PspN4I | GGNNCC | 3 cut(s) | 528, 672, 886 |
| PspPI | GGNCC | 1 cut(s) | 479 |
| PstI | CTGCAG | 1 cut(s) | 916 |
| PsuI | RGATCY | 2 cut(s) | 317, 441 |
| RsaI | GTAC | 1 cut(s) | 797 |
| RsaNI | GTAC | 1 cut(s) | 796 |
| SaqAI | TTAA | 4 cut(s) | 393, 414, 663, 925 |
| SatI | GCNGC | 3 cut(s) | 655, 809, 912 |
| Sau3AI | GATC | 5 cut(s) | 96, 201, 317, 343, 441 |
| Sau96I | GGNCC | 1 cut(s) | 479 |
| SchI | GAGTC | 1 cut(s) | 262 |
| ScrFI | CCNGG | 2 cut(s) | 225, 533 |
| SduI | GDGCHC | 2 cut(s) | 531, 675 |
| SexAI | ACCWGGT | 1 cut(s) | 223 |
| SfaNI | GCATC | 2 cut(s) | 795, 898 |
| SfcI | CTRYAG | 1 cut(s) | 912 |
| SinI | GGWCC | 1 cut(s) | 479 |
| SmlI | CTYRAG | 1 cut(s) | 269 |
| SmoI | CTYRAG | 1 cut(s) | 269 |
| Sse9I | AATT | 2 cut(s) | 561, 706 |
| SseBI | AGGCCT | 1 cut(s) | 918 |
| SsiI | CCGC | 5 cut(s) | 181, 205, 235, 510, 749 |
| SspI | AATATT | 2 cut(s) | 643, 818 |
| SspMI | CTAG | 4 cut(s) | 6, 12, 48, 483 |
| StuI | AGGCCT | 1 cut(s) | 918 |
| StyD4I | CCNGG | 2 cut(s) | 223, 531 |
| StyI | CCWWGG | 2 cut(s) | 5, 355 |
| TaaI | ACNGT | 2 cut(s) | 80, 893 |
| TaqI | TCGA | 1 cut(s) | 99 |
| TasI | AATT | 2 cut(s) | 561, 706 |
| Tru1I | TTAA | 4 cut(s) | 393, 414, 663, 925 |
| Tru9I | TTAA | 4 cut(s) | 393, 414, 663, 925 |
| TscAI | CASTG | 3 cut(s) | 499, 664, 898 |
| TseI | GCWGC | 3 cut(s) | 654, 808, 911 |
| TspDTI | ATGAA | 4 cut(s) | 344, 396, 449, 519 |
| TspGWI | ACGGA | 1 cut(s) | 897 |
| TspRI | CASTG | 3 cut(s) | 499, 664, 898 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 692 |
| VpaK11BI | GGWCC | 1 cut(s) | 479 |
| VspI | ATTAAT | 1 cut(s) | 393 |
| XapI | RAATTY | 2 cut(s) | 561, 706 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 362 |
| XmaJI | CCTAGG | 1 cut(s) | 5 |
| XmnI | GAANNNNTTC | 1 cut(s) | 452 |
| XspI | CTAG | 4 cut(s) | 6, 12, 48, 483 |