TMV resistance protein N-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 55 |
| AclWI | GGATC | 5 cut(s) | 309, 575, 668, 768, 906 |
| AcoI | YGGCCR | 1 cut(s) | 592 |
| AcsI | RAATTY | 3 cut(s) | 213, 367, 507 |
| AfaI | GTAC | 2 cut(s) | 282, 861 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 322, 590 |
| AflII | CTTAAG | 1 cut(s) | 710 |
| AgeI | ACCGGT | 1 cut(s) | 929 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 742 |
| AhlI | ACTAGT | 1 cut(s) | 424 |
| AleI | CACNNNNGTG | 1 cut(s) | 402 |
| AluBI | AGCT | 6 cut(s) | 189, 252, 534, 550, 607, 640 |
| AluI | AGCT | 6 cut(s) | 189, 252, 534, 550, 607, 640 |
| Alw26I | GTCTC | 5 cut(s) | 33, 602, 729, 764, 834 |
| AlwI | GGATC | 5 cut(s) | 309, 575, 668, 768, 906 |
| AoxI | GGCC | 3 cut(s) | 407, 592, 814 |
| ApaI | GGGCCC | 1 cut(s) | 411 |
| ApeKI | GCWGC | 2 cut(s) | 394, 640 |
| ApoI | RAATTY | 3 cut(s) | 213, 367, 507 |
| AsiGI | ACCGGT | 1 cut(s) | 929 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 15, 916 |
| AspS9I | GGNCC | 3 cut(s) | 325, 407, 408 |
| AvaII | GGWCC | 1 cut(s) | 325 |
| AxyI | CCTNAGG | 1 cut(s) | 90 |
| BaeGI | GKGCMC | 2 cut(s) | 385, 411 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 843, 876 |
| BanII | GRGCYC | 1 cut(s) | 411 |
| BbvI | GCAGC | 2 cut(s) | 381, 627 |
| BccI | CCATC | 2 cut(s) | 785, 871 |
| BceAI | ACGGC | 2 cut(s) | 196, 579 |
| BcoDI | GTCTC | 5 cut(s) | 33, 602, 729, 764, 834 |
| BcuI | ACTAGT | 1 cut(s) | 424 |
| BfaI | CTAG | 1 cut(s) | 425 |
| BfmI | CTRYAG | 1 cut(s) | 641 |
| BfrI | CTTAAG | 1 cut(s) | 710 |
| BisI | GCNGC | 2 cut(s) | 395, 641 |
| BlsI | GCNGC | 2 cut(s) | 396, 642 |
| BmcAI | AGTACT | 1 cut(s) | 282 |
| Bme18I | GGWCC | 1 cut(s) | 325 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 742 |
| BmgT120I | GGNCC | 3 cut(s) | 325, 407, 408 |
| BmiI | GGNNCC | 2 cut(s) | 326, 409 |
| BoxI | GACNNNNGTC | 1 cut(s) | 25 |
| BpmI | CTGGAG | 1 cut(s) | 914 |
| Bsa29I | ATCGAT | 1 cut(s) | 627 |
| BsaBI | GATNNNNATC | 1 cut(s) | 903 |
| BsaJI | CCNNGG | 1 cut(s) | 377 |
| BsaWI | WCCGGW | 1 cut(s) | 929 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 282, 312 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 322, 590 |
| Bse118I | RCCGGY | 1 cut(s) | 929 |
| Bse1I | ACTGG | 4 cut(s) | 271, 316, 338, 817 |
| Bse21I | CCTNAGG | 1 cut(s) | 90 |
| Bse8I | GATNNNNATC | 1 cut(s) | 903 |
| BseCI | ATCGAT | 1 cut(s) | 627 |
| BseDI | CCNNGG | 1 cut(s) | 377 |
| BseGI | GGATG | 1 cut(s) | 261 |
| BseJI | GATNNNNATC | 1 cut(s) | 903 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 322, 590 |
| BseMII | CTCAG | 1 cut(s) | 81 |
| BseNI | ACTGG | 4 cut(s) | 271, 316, 338, 817 |
| BseSI | GKGCMC | 2 cut(s) | 385, 411 |
| BseXI | GCAGC | 2 cut(s) | 381, 627 |
| BsgI | GTGCAG | 2 cut(s) | 380, 397 |
| Bsh1285I | CGRYCG | 1 cut(s) | 356 |
| BshFI | GGCC | 3 cut(s) | 409, 594, 816 |
| BshTI | ACCGGT | 1 cut(s) | 929 |
| BshVI | ATCGAT | 1 cut(s) | 627 |
| BsiEI | CGRYCG | 1 cut(s) | 356 |
| BsiSI | CCGG | 1 cut(s) | 930 |
| BslFI | GGGAC | 1 cut(s) | 71 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 322, 590 |
| BsmAI | GTCTC | 5 cut(s) | 33, 602, 729, 764, 834 |
| BsmBI | CGTCTC | 1 cut(s) | 602 |
| BsmFI | GGGAC | 1 cut(s) | 71 |
| BsmI | GAATGC | 1 cut(s) | 123 |
| BsnI | GGCC | 3 cut(s) | 409, 594, 816 |
| Bsp120I | GGGCCC | 1 cut(s) | 407 |
| Bsp1286I | GDGCHC | 2 cut(s) | 385, 411 |
| Bsp143I | GATC | 7 cut(s) | 301, 353, 580, 660, 760, 898, 904 |
| BspANI | GGCC | 3 cut(s) | 409, 594, 816 |
| BspCNI | CTCAG | 1 cut(s) | 82 |
| BspDI | ATCGAT | 1 cut(s) | 627 |
| BspLI | GGNNCC | 2 cut(s) | 326, 409 |
| BspMAI | CTGCAG | 1 cut(s) | 645 |
| BspPI | GGATC | 5 cut(s) | 309, 575, 668, 768, 906 |
| BspTI | CTTAAG | 1 cut(s) | 710 |
| BsrFI | RCCGGY | 1 cut(s) | 929 |
| BsrI | ACTGG | 4 cut(s) | 271, 316, 338, 817 |
| BssAI | RCCGGY | 1 cut(s) | 929 |
| BssECI | CCNNGG | 1 cut(s) | 377 |
| BssMI | GATC | 7 cut(s) | 301, 353, 580, 660, 760, 898, 904 |
| Bst4CI | ACNGT | 2 cut(s) | 60, 842 |
| Bst6I | CTCTTC | 2 cut(s) | 130, 928 |
| BstAFI | CTTAAG | 1 cut(s) | 710 |
| BstDEI | CTNAG | 3 cut(s) | 90, 535, 764 |
| BstF5I | GGATG | 1 cut(s) | 261 |
| BstKTI | GATC | 7 cut(s) | 304, 356, 583, 663, 763, 901, 907 |
| BstMAI | GTCTC | 5 cut(s) | 33, 602, 729, 764, 834 |
| BstMBI | GATC | 7 cut(s) | 301, 353, 580, 660, 760, 898, 904 |
| BstMCI | CGRYCG | 1 cut(s) | 356 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 801 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 25 |
| BstSFI | CTRYAG | 1 cut(s) | 641 |
| BstSLI | GKGCMC | 2 cut(s) | 385, 411 |
| BstV1I | GCAGC | 2 cut(s) | 381, 627 |
| BstX2I | RGATCY | 2 cut(s) | 760, 898 |
| BstYI | RGATCY | 2 cut(s) | 760, 898 |
| Bsu15I | ATCGAT | 1 cut(s) | 627 |
| Bsu36I | CCTNAGG | 1 cut(s) | 90 |
| BsuRI | GGCC | 3 cut(s) | 409, 594, 816 |
| BsuTUI | ATCGAT | 1 cut(s) | 627 |
| BtsCI | GGATG | 1 cut(s) | 261 |
| BtsIMutI | CAGTG | 1 cut(s) | 810 |
| Cfr10I | RCCGGY | 1 cut(s) | 929 |
| Cfr13I | GGNCC | 3 cut(s) | 325, 407, 408 |
| ClaI | ATCGAT | 1 cut(s) | 627 |
| Csp6I | GTAC | 2 cut(s) | 281, 860 |
| CspAI | ACCGGT | 1 cut(s) | 929 |
| CviAII | CATG | 4 cut(s) | 287, 400, 494, 739 |
| CviQI | GTAC | 2 cut(s) | 281, 860 |
| DdeI | CTNAG | 3 cut(s) | 90, 535, 764 |
| DpnI | GATC | 7 cut(s) | 303, 355, 582, 662, 762, 900, 906 |
| DpnII | GATC | 7 cut(s) | 301, 353, 580, 660, 760, 898, 904 |
| DriI | GACNNNNNGTC | 1 cut(s) | 742 |
| EaeI | YGGCCR | 1 cut(s) | 592 |
| Eam1104I | CTCTTC | 2 cut(s) | 130, 928 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 742 |
| EarI | CTCTTC | 2 cut(s) | 130, 928 |
| Eco24I | GRGCYC | 1 cut(s) | 411 |
| Eco47I | GGWCC | 1 cut(s) | 325 |
| Eco81I | CCTNAGG | 1 cut(s) | 90 |
| EcoO109I | RGGNCCY | 2 cut(s) | 325, 408 |
| EcoRI | GAATTC | 1 cut(s) | 507 |
| EcoT38I | GRGCYC | 1 cut(s) | 411 |
| Esp3I | CGTCTC | 1 cut(s) | 602 |
| FaeI | CATG | 4 cut(s) | 290, 403, 497, 742 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 15, 47 |
| FaqI | GGGAC | 1 cut(s) | 71 |
| FatI | CATG | 4 cut(s) | 286, 399, 493, 738 |
| FblI | GTMKAC | 1 cut(s) | 55 |
| Fnu4HI | GCNGC | 2 cut(s) | 395, 641 |
| FokI | GGATG | 1 cut(s) | 248 |
| FriOI | GRGCYC | 1 cut(s) | 411 |
| Fsp4HI | GCNGC | 2 cut(s) | 395, 641 |
| FspBI | CTAG | 1 cut(s) | 425 |
| GluI | GCNGC | 2 cut(s) | 395, 641 |
| GsuI | CTGGAG | 1 cut(s) | 914 |
| HaeIII | GGCC | 3 cut(s) | 409, 594, 816 |
| HapII | CCGG | 1 cut(s) | 930 |
| Hin1II | CATG | 4 cut(s) | 290, 403, 497, 742 |
| HindIII | AAGCTT | 2 cut(s) | 187, 532 |
| HinfI | GANTC | 3 cut(s) | 26, 445, 912 |
| HpaII | CCGG | 1 cut(s) | 930 |
| Hpy166II | GTNNAC | 2 cut(s) | 56, 430 |
| Hpy188I | TCNGA | 2 cut(s) | 148, 378 |
| Hpy188III | TCNNGA | 9 cut(s) | 32, 80, 512, 522, 599, 653, 758, 893, 902 |
| Hpy8I | GTNNAC | 2 cut(s) | 56, 430 |
| HpyAV | CCTTC | 2 cut(s) | 331, 594 |
| HpyCH4III | ACNGT | 2 cut(s) | 60, 842 |
| HpyCH4IV | ACGT | 1 cut(s) | 889 |
| HpyCH4V | TGCA | 4 cut(s) | 397, 414, 643, 886 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 801 |
| HpyF3I | CTNAG | 3 cut(s) | 90, 535, 764 |
| HpySE526I | ACGT | 1 cut(s) | 889 |
| Hsp92II | CATG | 4 cut(s) | 290, 403, 497, 742 |
| Kzo9I | GATC | 7 cut(s) | 301, 353, 580, 660, 760, 898, 904 |
| LmnI | GCTCC | 1 cut(s) | 547 |
| Lsp1109I | GCAGC | 2 cut(s) | 381, 627 |
| MaeI | CTAG | 1 cut(s) | 425 |
| MaeII | ACGT | 1 cut(s) | 889 |
| MaeIII | GTNAC | 1 cut(s) | 786 |
| MalI | GATC | 7 cut(s) | 303, 355, 582, 662, 762, 900, 906 |
| MboI | GATC | 7 cut(s) | 301, 353, 580, 660, 760, 898, 904 |
| MboII | GAAGA | 6 cut(s) | 147, 200, 454, 709, 857, 915 |
| MflI | RGATCY | 2 cut(s) | 760, 898 |
| MhlI | GDGCHC | 2 cut(s) | 385, 411 |
| MluCI | AATT | 9 cut(s) | 12, 114, 213, 367, 470, 507, 556, 726, 881 |
| MlyI | GAGTC | 1 cut(s) | 35 |
| MmeI | TCCRAC | 1 cut(s) | 171 |
| MnlI | CCTC | 9 cut(s) | 64, 85, 338, 372, 427, 651, 724, 889, 931 |
| MroXI | GAANNNNTTC | 2 cut(s) | 15, 916 |
| MseI | TTAA | 8 cut(s) | 117, 320, 372, 500, 527, 555, 711, 819 |
| MslI | CAYNNNNRTG | 1 cut(s) | 402 |
| MspCI | CTTAAG | 1 cut(s) | 710 |
| MspI | CCGG | 1 cut(s) | 930 |
| Mva1269I | GAATGC | 1 cut(s) | 123 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 801 |
| NdeII | GATC | 7 cut(s) | 301, 353, 580, 660, 760, 898, 904 |
| NlaIII | CATG | 4 cut(s) | 290, 403, 497, 742 |
| NlaIV | GGNNCC | 2 cut(s) | 326, 409 |
| OliI | CACNNNNGTG | 1 cut(s) | 402 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 362, 606 |
| PctI | GAATGC | 1 cut(s) | 123 |
| PdmI | GAANNNNTTC | 2 cut(s) | 15, 916 |
| PfeI | GAWTC | 2 cut(s) | 445, 912 |
| PinAI | ACCGGT | 1 cut(s) | 929 |
| PkrI | GCNGC | 2 cut(s) | 396, 642 |
| Ple19I | CGATCG | 1 cut(s) | 356 |
| PleI | GAGTC | 1 cut(s) | 34 |
| PpsI | GAGTC | 1 cut(s) | 34 |
| PpuMI | RGGWCCY | 1 cut(s) | 325 |
| PshAI | GACNNNNGTC | 1 cut(s) | 25 |
| Psp5II | RGGWCCY | 1 cut(s) | 325 |
| PspN4I | GGNNCC | 2 cut(s) | 326, 409 |
| PspOMI | GGGCCC | 1 cut(s) | 407 |
| PspPI | GGNCC | 3 cut(s) | 325, 407, 408 |
| PspPPI | RGGWCCY | 1 cut(s) | 325 |
| PstI | CTGCAG | 1 cut(s) | 645 |
| PsuI | RGATCY | 2 cut(s) | 760, 898 |
| PvuI | CGATCG | 1 cut(s) | 356 |
| RsaI | GTAC | 2 cut(s) | 282, 861 |
| RsaNI | GTAC | 2 cut(s) | 281, 860 |
| RseI | CAYNNNNRTG | 1 cut(s) | 402 |
| SaqAI | TTAA | 8 cut(s) | 117, 320, 372, 500, 527, 555, 711, 819 |
| SatI | GCNGC | 2 cut(s) | 395, 641 |
| Sau3AI | GATC | 7 cut(s) | 301, 353, 580, 660, 760, 898, 904 |
| Sau96I | GGNCC | 3 cut(s) | 325, 407, 408 |
| ScaI | AGTACT | 1 cut(s) | 282 |
| SchI | GAGTC | 1 cut(s) | 35 |
| SduI | GDGCHC | 2 cut(s) | 385, 411 |
| SetI | ASST | 8 cut(s) | 191, 254, 536, 552, 609, 642, 793, 892 |
| SfcI | CTRYAG | 1 cut(s) | 641 |
| SinI | GGWCC | 1 cut(s) | 325 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 402 |
| SmlI | CTYRAG | 1 cut(s) | 710 |
| SmoI | CTYRAG | 1 cut(s) | 710 |
| SpeI | ACTAGT | 1 cut(s) | 424 |
| Sse9I | AATT | 9 cut(s) | 12, 114, 213, 367, 470, 507, 556, 726, 881 |
| SspMI | CTAG | 1 cut(s) | 425 |
| TaaI | ACNGT | 2 cut(s) | 60, 842 |
| TaiI | ACGT | 1 cut(s) | 892 |
| TaqI | TCGA | 6 cut(s) | 19, 225, 330, 600, 627, 866 |
| TasI | AATT | 9 cut(s) | 12, 114, 213, 367, 470, 507, 556, 726, 881 |
| TatI | WGTACW | 1 cut(s) | 280 |
| TfiI | GAWTC | 2 cut(s) | 445, 912 |
| Tru1I | TTAA | 8 cut(s) | 117, 320, 372, 500, 527, 555, 711, 819 |
| Tru9I | TTAA | 8 cut(s) | 117, 320, 372, 500, 527, 555, 711, 819 |
| TscAI | CASTG | 1 cut(s) | 817 |
| TseI | GCWGC | 2 cut(s) | 394, 640 |
| TspDTI | ATGAA | 3 cut(s) | 275, 755, 894 |
| TspGWI | ACGGA | 3 cut(s) | 122, 258, 377 |
| TspRI | CASTG | 1 cut(s) | 817 |
| Vha464I | CTTAAG | 1 cut(s) | 710 |
| VpaK11BI | GGWCC | 1 cut(s) | 325 |
| XapI | RAATTY | 3 cut(s) | 213, 367, 507 |
| XmiI | GTMKAC | 1 cut(s) | 55 |
| XmnI | GAANNNNTTC | 2 cut(s) | 15, 916 |
| XspI | CTAG | 1 cut(s) | 425 |
| ZrmI | AGTACT | 1 cut(s) | 282 |