TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 19 - 184 | 3.3e-55 | TIR domain |
| TIR_2 | PF13676 | 22 - 117 | 3.4e-16 | TIR domain |
| NB-ARC | PF00931 | 210 - 358 | 1.8e-12 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 425 - 494 | 7.6e-20 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 639 - 736 | 7.8e-12 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 554, 1533, 1877 |
| AccB1I | GGYRCC | 2 cut(s) | 2214, 2770 |
| AccII | CGCG | 1 cut(s) | 125 |
| AciI | CCGC | 3 cut(s) | 386, 449, 2165 |
| AclI | AACGTT | 1 cut(s) | 1536 |
| AclWI | GGATC | 4 cut(s) | 283, 341, 354, 1484 |
| AcsI | RAATTY | 8 cut(s) | 8, 469, 730, 1227, 1236, 1711, 1948, 2131 |
| AcuI | CTGAAG | 3 cut(s) | 1036, 1051, 2809 |
| AfaI | GTAC | 2 cut(s) | 1010, 1812 |
| AfeI | AGCGCT | 1 cut(s) | 195 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 264, 1370, 1823, 2369 |
| AflIII | ACRYGT | 2 cut(s) | 2064, 2141 |
| AjnI | CCWGG | 6 cut(s) | 711, 1363, 1473, 1492, 2422, 2844 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2418, 2450 |
| Alw21I | GWGCWC | 4 cut(s) | 168, 1050, 1386, 2844 |
| Alw26I | GTCTC | 4 cut(s) | 593, 761, 1747, 2615 |
| Alw44I | GTGCAC | 1 cut(s) | 2840 |
| AlwI | GGATC | 4 cut(s) | 283, 341, 354, 1484 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 319, 2267, 2832 |
| Ama87I | CYCGRG | 2 cut(s) | 293, 2283 |
| Aor51HI | AGCGCT | 1 cut(s) | 195 |
| AoxI | GGCC | 5 cut(s) | 109, 482, 1132, 1354, 1395 |
| ApaLI | GTGCAC | 1 cut(s) | 2840 |
| ApeKI | GCWGC | 7 cut(s) | 17, 120, 464, 818, 1588, 2264, 2267 |
| ApoI | RAATTY | 8 cut(s) | 8, 469, 730, 1227, 1236, 1711, 1948, 2131 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 485, 517, 2588, 2620 |
| AseI | ATTAAT | 1 cut(s) | 1377 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 432, 1064, 2277 |
| AspA2I | CCTAGG | 1 cut(s) | 2522 |
| AspLEI | GCGC | 2 cut(s) | 125, 196 |
| AspS9I | GGNCC | 2 cut(s) | 1079, 1396 |
| AsuHPI | GGTGA | 5 cut(s) | 160, 820, 1463, 2606, 2921 |
| AvaI | CYCGRG | 2 cut(s) | 293, 2283 |
| AvaII | GGWCC | 1 cut(s) | 1079 |
| AvrII | CCTAGG | 1 cut(s) | 2522 |
| BaeGI | GKGCMC | 4 cut(s) | 2219, 2773, 2844, 2859 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1408, 1441 |
| BamHI | GGATCC | 1 cut(s) | 346 |
| BanI | GGYRCC | 2 cut(s) | 2214, 2770 |
| BanII | GRGCYC | 2 cut(s) | 168, 1050 |
| BauI | CACGAG | 1 cut(s) | 603 |
| Bbv12I | GWGCWC | 4 cut(s) | 168, 1050, 1386, 2844 |
| BbvI | GCAGC | 7 cut(s) | 29, 132, 476, 805, 1575, 2254, 2276 |
| BccI | CCATC | 9 cut(s) | 54, 474, 1202, 1853, 1893, 2108, 2632, 2698, 2900 |
| BceAI | ACGGC | 1 cut(s) | 1937 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 305, 339, 1656, 1690 |
| BciT130I | CCWGG | 6 cut(s) | 713, 1365, 1475, 1494, 2424, 2846 |
| BciVI | GTATCC | 4 cut(s) | 82, 594, 1436, 2030 |
| BclI | TGATCA | 1 cut(s) | 2761 |
| BcoDI | GTCTC | 4 cut(s) | 593, 761, 1747, 2615 |
| BfaI | CTAG | 9 cut(s) | 788, 872, 1142, 1157, 1289, 1445, 1869, 2523, 2804 |
| BfmI | CTRYAG | 5 cut(s) | 822, 1116, 1933, 2268, 2599 |
| BfoI | RGCGCY | 1 cut(s) | 197 |
| BfuI | GTATCC | 4 cut(s) | 82, 594, 1436, 2030 |
| BglII | AGATCT | 1 cut(s) | 537 |
| BlnI | CCTAGG | 1 cut(s) | 2522 |
| Bme1390I | CCNGG | 6 cut(s) | 713, 1365, 1475, 1494, 2424, 2846 |
| Bme18I | GGWCC | 1 cut(s) | 1079 |
| BmeT110I | CYCGRG | 2 cut(s) | 293, 2283 |
| BmgT120I | GGNCC | 2 cut(s) | 1079, 1396 |
| BmiI | GGNNCC | 3 cut(s) | 348, 2216, 2772 |
| BmrFI | CCNGG | 6 cut(s) | 713, 1365, 1475, 1494, 2424, 2846 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1598, 1630, 1978, 2010 |
| BpuEI | CTTGAG | 4 cut(s) | 1113, 1600, 1964, 2071 |
| BsaAI | YACGTR | 2 cut(s) | 564, 1330 |
| BsaBI | GATNNNNATC | 3 cut(s) | 227, 1903, 2516 |
| BsaI | GGTCTC | 2 cut(s) | 761, 2615 |
| BsaJI | CCNNGG | 4 cut(s) | 50, 1363, 2282, 2522 |
| BsaWI | WCCGGW | 1 cut(s) | 586 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 738, 768 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 264, 1370, 1823, 2369 |
| Bse1I | ACTGG | 5 cut(s) | 324, 329, 446, 640, 2011 |
| Bse3DI | GCAATG | 1 cut(s) | 1375 |
| Bse8I | GATNNNNATC | 3 cut(s) | 227, 1903, 2516 |
| BseBI | CCWGG | 6 cut(s) | 713, 1365, 1475, 1494, 2424, 2846 |
| BseDI | CCNNGG | 4 cut(s) | 50, 1363, 2282, 2522 |
| BseJI | GATNNNNATC | 3 cut(s) | 227, 1903, 2516 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 264, 1370, 1823, 2369 |
| BseMI | GCAATG | 1 cut(s) | 1375 |
| BseMII | CTCAG | 3 cut(s) | 62, 555, 2394 |
| BseNI | ACTGG | 5 cut(s) | 324, 329, 446, 640, 2011 |
| BseRI | GAGGAG | 3 cut(s) | 19, 96, 189 |
| BseSI | GKGCMC | 4 cut(s) | 2219, 2773, 2844, 2859 |
| BseXI | GCAGC | 7 cut(s) | 29, 132, 476, 805, 1575, 2254, 2276 |
| BseYI | CCCAGC | 2 cut(s) | 917, 2346 |
| BsgI | GTGCAG | 3 cut(s) | 139, 2583, 2632 |
| Bsh1236I | CGCG | 1 cut(s) | 125 |
| BshFI | GGCC | 5 cut(s) | 111, 484, 1134, 1356, 1397 |
| BshNI | GGYRCC | 2 cut(s) | 2214, 2770 |
| BsiHKAI | GWGCWC | 4 cut(s) | 168, 1050, 1386, 2844 |
| BsiHKCI | CYCGRG | 2 cut(s) | 293, 2283 |
| BsiSI | CCGG | 1 cut(s) | 587 |
| BslFI | GGGAC | 3 cut(s) | 646, 936, 2017 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 264, 1370, 1823, 2369 |
| BsmAI | GTCTC | 4 cut(s) | 593, 761, 1747, 2615 |
| BsmFI | GGGAC | 3 cut(s) | 646, 936, 2017 |
| BsmI | GAATGC | 1 cut(s) | 1066 |
| BsnI | GGCC | 5 cut(s) | 111, 484, 1134, 1356, 1397 |
| Bso31I | GGTCTC | 2 cut(s) | 761, 2615 |
| BsoBI | CYCGRG | 2 cut(s) | 293, 2283 |
| Bsp1286I | GDGCHC | 7 cut(s) | 168, 1050, 1386, 2219, 2773, 2844, 2859 |
| Bsp1407I | TGTACA | 1 cut(s) | 1008 |
| Bsp143I | GATC | 5 cut(s) | 288, 346, 537, 1489, 2761 |
| Bsp19I | CCATGG | 1 cut(s) | 50 |
| BspACI | CCGC | 3 cut(s) | 386, 449, 2165 |
| BspANI | GGCC | 5 cut(s) | 111, 484, 1134, 1356, 1397 |
| BspCNI | CTCAG | 3 cut(s) | 63, 554, 2395 |
| BspFNI | CGCG | 1 cut(s) | 125 |
| BspHI | TCATGA | 3 cut(s) | 520, 1033, 1519 |
| BspLI | GGNNCC | 3 cut(s) | 348, 2216, 2772 |
| BspMAI | CTGCAG | 3 cut(s) | 1937, 2272, 2603 |
| BspPI | GGATC | 4 cut(s) | 283, 341, 354, 1484 |
| BspQI | GCTCTTC | 1 cut(s) | 1055 |
| BspT107I | GGYRCC | 2 cut(s) | 2214, 2770 |
| BspTNI | GGTCTC | 2 cut(s) | 761, 2615 |
| BsrDI | GCAATG | 1 cut(s) | 1375 |
| BsrGI | TGTACA | 1 cut(s) | 1008 |
| BsrI | ACTGG | 5 cut(s) | 324, 329, 446, 640, 2011 |
| BssECI | CCNNGG | 4 cut(s) | 50, 1363, 2282, 2522 |
| BssMI | GATC | 5 cut(s) | 288, 346, 537, 1489, 2761 |
| BssSI | CACGAG | 1 cut(s) | 603 |
| BssT1I | CCWWGG | 2 cut(s) | 50, 2522 |
| Bst2BI | CACGAG | 1 cut(s) | 603 |
| Bst2UI | CCWGG | 6 cut(s) | 713, 1365, 1475, 1494, 2424, 2846 |
| Bst4CI | ACNGT | 6 cut(s) | 216, 1424, 1656, 2340, 2385, 2810 |
| Bst6I | CTCTTC | 4 cut(s) | 37, 528, 1055, 2828 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1441 |
| BstAUI | TGTACA | 1 cut(s) | 1008 |
| BstBAI | YACGTR | 2 cut(s) | 564, 1330 |
| BstC8I | GCNNGC | 2 cut(s) | 1508, 2248 |
| BstDEI | CTNAG | 9 cut(s) | 71, 541, 751, 913, 1563, 1649, 1801, 2153, 2403 |
| BstDSI | CCRYGG | 1 cut(s) | 50 |
| BstEII | GGTNACC | 1 cut(s) | 808 |
| BstFNI | CGCG | 1 cut(s) | 125 |
| BstH2I | RGCGCY | 1 cut(s) | 197 |
| BstHHI | GCGC | 2 cut(s) | 125, 196 |
| BstKTI | GATC | 5 cut(s) | 291, 349, 540, 1492, 2764 |
| BstMAI | GTCTC | 4 cut(s) | 593, 761, 1747, 2615 |
| BstMBI | GATC | 5 cut(s) | 288, 346, 537, 1489, 2761 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 117, 392, 747, 1196, 1441, 2934 |
| BstNI | CCWGG | 6 cut(s) | 713, 1365, 1475, 1494, 2424, 2846 |
| BstNSI | RCATGY | 3 cut(s) | 1302, 2068, 2145 |
| BstPI | GGTNACC | 1 cut(s) | 808 |
| BstSCI | CCNGG | 6 cut(s) | 711, 1363, 1473, 1492, 2422, 2844 |
| BstSFI | CTRYAG | 5 cut(s) | 822, 1116, 1933, 2268, 2599 |
| BstSLI | GKGCMC | 4 cut(s) | 2219, 2773, 2844, 2859 |
| BstSNI | TACGTA | 1 cut(s) | 564 |
| BstUI | CGCG | 1 cut(s) | 125 |
| BstV1I | GCAGC | 7 cut(s) | 29, 132, 476, 805, 1575, 2254, 2276 |
| BstX2I | RGATCY | 3 cut(s) | 288, 346, 537 |
| BstYI | RGATCY | 3 cut(s) | 288, 346, 537 |
| BsuI | GTATCC | 4 cut(s) | 82, 594, 1436, 2030 |
| BsuRI | GGCC | 5 cut(s) | 111, 484, 1134, 1356, 1397 |
| BtgI | CCRYGG | 1 cut(s) | 50 |
| BtsI | GCAGTG | 1 cut(s) | 2935 |
| BtsIMutI | CAGTG | 2 cut(s) | 1386, 2935 |
| Cac8I | GCNNGC | 2 cut(s) | 1508, 2248 |
| CaiI | CAGNNNCTG | 3 cut(s) | 319, 2267, 2832 |
| CciI | TCATGA | 3 cut(s) | 520, 1033, 1519 |
| CfoI | GCGC | 2 cut(s) | 125, 196 |
| Cfr13I | GGNCC | 2 cut(s) | 1079, 1396 |
| CseI | GACGC | 1 cut(s) | 119 |
| Csp6I | GTAC | 2 cut(s) | 1009, 1811 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1128, 1163 |
| CviQI | GTAC | 2 cut(s) | 1009, 1811 |
| DdeI | CTNAG | 9 cut(s) | 71, 541, 751, 913, 1563, 1649, 1801, 2153, 2403 |
| DpnI | GATC | 5 cut(s) | 290, 348, 539, 1491, 2763 |
| DpnII | GATC | 5 cut(s) | 288, 346, 537, 1489, 2761 |
| DraI | TTTAAA | 1 cut(s) | 1309 |
| Eam1104I | CTCTTC | 4 cut(s) | 37, 528, 1055, 2828 |
| EarI | CTCTTC | 4 cut(s) | 37, 528, 1055, 2828 |
| Ecl136II | GAGCTC | 2 cut(s) | 166, 1048 |
| Eco105I | TACGTA | 1 cut(s) | 564 |
| Eco130I | CCWWGG | 2 cut(s) | 50, 2522 |
| Eco147I | AGGCCT | 1 cut(s) | 1134 |
| Eco24I | GRGCYC | 2 cut(s) | 168, 1050 |
| Eco31I | GGTCTC | 2 cut(s) | 761, 2615 |
| Eco47I | GGWCC | 1 cut(s) | 1079 |
| Eco47III | AGCGCT | 1 cut(s) | 195 |
| Eco53kI | GAGCTC | 2 cut(s) | 166, 1048 |
| Eco57I | CTGAAG | 3 cut(s) | 1036, 1051, 2809 |
| Eco88I | CYCGRG | 2 cut(s) | 293, 2283 |
| Eco91I | GGTNACC | 1 cut(s) | 808 |
| EcoICRI | GAGCTC | 2 cut(s) | 166, 1048 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1079 |
| EcoO65I | GGTNACC | 1 cut(s) | 808 |
| EcoRII | CCWGG | 6 cut(s) | 711, 1363, 1473, 1492, 2422, 2844 |
| EcoT14I | CCWWGG | 2 cut(s) | 50, 2522 |
| EcoT22I | ATGCAT | 4 cut(s) | 256, 1192, 1261, 1437 |
| EcoT38I | GRGCYC | 2 cut(s) | 168, 1050 |
| ErhI | CCWWGG | 2 cut(s) | 50, 2522 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 254, 286, 756, 788, 2234, 2266 |
| FaqI | GGGAC | 3 cut(s) | 646, 936, 2017 |
| FbaI | TGATCA | 1 cut(s) | 2761 |
| FriOI | GRGCYC | 2 cut(s) | 168, 1050 |
| FspBI | CTAG | 9 cut(s) | 788, 872, 1142, 1157, 1289, 1445, 1869, 2523, 2804 |
| GlaI | GCGC | 2 cut(s) | 124, 195 |
| GsaI | CCCAGC | 2 cut(s) | 921, 2350 |
| HaeII | RGCGCY | 1 cut(s) | 197 |
| HaeIII | GGCC | 5 cut(s) | 111, 484, 1134, 1356, 1397 |
| HapII | CCGG | 1 cut(s) | 587 |
| HgaI | GACGC | 1 cut(s) | 119 |
| HhaI | GCGC | 2 cut(s) | 125, 196 |
| Hin6I | GCGC | 2 cut(s) | 123, 194 |
| HinP1I | GCGC | 2 cut(s) | 123, 194 |
| HincII | GTYRAC | 1 cut(s) | 2786 |
| HindII | GTYRAC | 1 cut(s) | 2786 |
| HindIII | AAGCTT | 1 cut(s) | 1798 |
| HpaII | CCGG | 1 cut(s) | 587 |
| HphI | GGTGA | 5 cut(s) | 160, 820, 1463, 2606, 2921 |
| Hpy166II | GTNNAC | 5 cut(s) | 1471, 1727, 2149, 2786, 2842 |
| Hpy8I | GTNNAC | 5 cut(s) | 1471, 1727, 2149, 2786, 2842 |
| Hpy99I | CGWCG | 5 cut(s) | 355, 2870, 2873, 2876, 2879 |
| HpyCH4III | ACNGT | 6 cut(s) | 216, 1424, 1656, 2340, 2385, 2810 |
| HpyCH4IV | ACGT | 5 cut(s) | 563, 1111, 1329, 1501, 1536 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 117, 392, 747, 1196, 1441, 2934 |
| HpyF3I | CTNAG | 9 cut(s) | 71, 541, 751, 913, 1563, 1649, 1801, 2153, 2403 |
| HpySE526I | ACGT | 5 cut(s) | 563, 1111, 1329, 1501, 1536 |
| HspAI | GCGC | 2 cut(s) | 123, 194 |
| Ksp22I | TGATCA | 1 cut(s) | 2761 |
| Kzo9I | GATC | 5 cut(s) | 288, 346, 537, 1489, 2761 |
| LguI | GCTCTTC | 1 cut(s) | 1055 |
| LmnI | GCTCC | 1 cut(s) | 1585 |
| Lsp1109I | GCAGC | 7 cut(s) | 29, 132, 476, 805, 1575, 2254, 2276 |
| MaeI | CTAG | 9 cut(s) | 788, 872, 1142, 1157, 1289, 1445, 1869, 2523, 2804 |
| MaeII | ACGT | 5 cut(s) | 563, 1111, 1329, 1501, 1536 |
| MaeIII | GTNAC | 3 cut(s) | 808, 2594, 2663 |
| MalI | GATC | 5 cut(s) | 290, 348, 539, 1491, 2763 |
| MboI | GATC | 5 cut(s) | 288, 346, 537, 1489, 2761 |
| MfeI | CAATTG | 2 cut(s) | 207, 657 |
| MflI | RGATCY | 3 cut(s) | 288, 346, 537 |
| MhlI | GDGCHC | 7 cut(s) | 168, 1050, 1386, 2219, 2773, 2844, 2859 |
| MlyI | GAGTC | 3 cut(s) | 595, 1487, 1987 |
| MmeI | TCCRAC | 7 cut(s) | 66, 333, 439, 1037, 1770, 1910, 2261 |
| Mph1103I | ATGCAT | 4 cut(s) | 256, 1192, 1261, 1437 |
| MroXI | GAANNNNTTC | 3 cut(s) | 432, 1064, 2277 |
| MseI | TTAA | 7 cut(s) | 905, 1004, 1308, 1377, 1715, 2129, 2202 |
| MslI | CAYNNNNRTG | 6 cut(s) | 152, 1391, 1524, 1580, 2659, 2886 |
| MspA1I | CMGCKG | 1 cut(s) | 2267 |
| MspI | CCGG | 1 cut(s) | 587 |
| MspR9I | CCNGG | 6 cut(s) | 713, 1365, 1475, 1494, 2424, 2846 |
| MunI | CAATTG | 2 cut(s) | 207, 657 |
| Mva1269I | GAATGC | 1 cut(s) | 1066 |
| MvaI | CCWGG | 6 cut(s) | 713, 1365, 1475, 1494, 2424, 2846 |
| MvnI | CGCG | 1 cut(s) | 125 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 117, 392, 747, 1196, 1441, 2934 |
| NcoI | CCATGG | 1 cut(s) | 50 |
| NdeII | GATC | 5 cut(s) | 288, 346, 537, 1489, 2761 |
| NlaIV | GGNNCC | 3 cut(s) | 348, 2216, 2772 |
| NmeAIII | GCCGAG | 1 cut(s) | 2918 |
| NmuCI | GTSAC | 2 cut(s) | 808, 2594 |
| NsiI | ATGCAT | 4 cut(s) | 256, 1192, 1261, 1437 |
| NspI | RCATGY | 3 cut(s) | 1302, 2068, 2145 |
| PaeR7I | CTCGAG | 1 cut(s) | 293 |
| PagI | TCATGA | 3 cut(s) | 520, 1033, 1519 |
| PceI | AGGCCT | 1 cut(s) | 1134 |
| PciI | ACATGT | 2 cut(s) | 2064, 2141 |
| PciSI | GCTCTTC | 1 cut(s) | 1055 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2871, 2874 |
| PctI | GAATGC | 1 cut(s) | 1066 |
| PdmI | GAANNNNTTC | 3 cut(s) | 432, 1064, 2277 |
| PfoI | TCCNGGA | 3 cut(s) | 711, 1492, 2422 |
| PleI | GAGTC | 3 cut(s) | 595, 1486, 1987 |
| PpsI | GAGTC | 3 cut(s) | 595, 1486, 1987 |
| Ppu21I | YACGTR | 2 cut(s) | 564, 1330 |
| PpuMI | RGGWCCY | 1 cut(s) | 1079 |
| PscI | ACATGT | 2 cut(s) | 2064, 2141 |
| PshBI | ATTAAT | 1 cut(s) | 1377 |
| PsiI | TTATAA | 3 cut(s) | 554, 1533, 1877 |
| Psp124BI | GAGCTC | 2 cut(s) | 168, 1050 |
| Psp1406I | AACGTT | 1 cut(s) | 1536 |
| Psp5II | RGGWCCY | 1 cut(s) | 1079 |
| Psp6I | CCWGG | 6 cut(s) | 711, 1363, 1473, 1492, 2422, 2844 |
| PspEI | GGTNACC | 1 cut(s) | 808 |
| PspFI | CCCAGC | 2 cut(s) | 917, 2346 |
| PspGI | CCWGG | 6 cut(s) | 711, 1363, 1473, 1492, 2422, 2844 |
| PspN4I | GGNNCC | 3 cut(s) | 348, 2216, 2772 |
| PspPI | GGNCC | 2 cut(s) | 1079, 1396 |
| PspPPI | RGGWCCY | 1 cut(s) | 1079 |
| PspXI | VCTCGAGB | 1 cut(s) | 293 |
| PstI | CTGCAG | 3 cut(s) | 1937, 2272, 2603 |
| PstNI | CAGNNNCTG | 3 cut(s) | 319, 2267, 2832 |
| PsuI | RGATCY | 3 cut(s) | 288, 346, 537 |
| PvuII | CAGCTG | 1 cut(s) | 2267 |
| RsaI | GTAC | 2 cut(s) | 1010, 1812 |
| RsaNI | GTAC | 2 cut(s) | 1009, 1811 |
| RseI | CAYNNNNRTG | 6 cut(s) | 152, 1391, 1524, 1580, 2659, 2886 |
| SacI | GAGCTC | 2 cut(s) | 168, 1050 |
| SapI | GCTCTTC | 1 cut(s) | 1055 |
| SaqAI | TTAA | 7 cut(s) | 905, 1004, 1308, 1377, 1715, 2129, 2202 |
| Sau3AI | GATC | 5 cut(s) | 288, 346, 537, 1489, 2761 |
| Sau96I | GGNCC | 2 cut(s) | 1079, 1396 |
| SchI | GAGTC | 3 cut(s) | 595, 1487, 1987 |
| ScrFI | CCNGG | 6 cut(s) | 713, 1365, 1475, 1494, 2424, 2846 |
| SduI | GDGCHC | 7 cut(s) | 168, 1050, 1386, 2219, 2773, 2844, 2859 |
| SfcI | CTRYAG | 5 cut(s) | 822, 1116, 1933, 2268, 2599 |
| Sfr274I | CTCGAG | 1 cut(s) | 293 |
| SinI | GGWCC | 1 cut(s) | 1079 |
| SlaI | CTCGAG | 1 cut(s) | 293 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 152, 1391, 1524, 1580, 2659, 2886 |
| SmlI | CTYRAG | 5 cut(s) | 293, 1128, 1615, 1943, 2050 |
| SmoI | CTYRAG | 5 cut(s) | 293, 1128, 1615, 1943, 2050 |
| SnaBI | TACGTA | 1 cut(s) | 564 |
| SseBI | AGGCCT | 1 cut(s) | 1134 |
| SsiI | CCGC | 3 cut(s) | 386, 449, 2165 |
| SspI | AATATT | 1 cut(s) | 1408 |
| SspMI | CTAG | 9 cut(s) | 788, 872, 1142, 1157, 1289, 1445, 1869, 2523, 2804 |
| SstI | GAGCTC | 2 cut(s) | 168, 1050 |
| StuI | AGGCCT | 1 cut(s) | 1134 |
| StyD4I | CCNGG | 6 cut(s) | 711, 1363, 1473, 1492, 2422, 2844 |
| StyI | CCWWGG | 2 cut(s) | 50, 2522 |
| TaaI | ACNGT | 6 cut(s) | 216, 1424, 1656, 2340, 2385, 2810 |
| TaiI | ACGT | 5 cut(s) | 566, 1114, 1332, 1504, 1539 |
| TaqI | TCGA | 6 cut(s) | 218, 294, 325, 1844, 2463, 2510 |
| TatI | WGTACW | 2 cut(s) | 1008, 1810 |
| TauI | GCSGC | 3 cut(s) | 389, 452, 2167 |
| Tru1I | TTAA | 7 cut(s) | 905, 1004, 1308, 1377, 1715, 2129, 2202 |
| Tru9I | TTAA | 7 cut(s) | 905, 1004, 1308, 1377, 1715, 2129, 2202 |
| TscAI | CASTG | 2 cut(s) | 1393, 2935 |
| TseFI | GTSAC | 2 cut(s) | 808, 2594 |
| TseI | GCWGC | 7 cut(s) | 17, 120, 464, 818, 1588, 2264, 2267 |
| Tsp45I | GTSAC | 2 cut(s) | 808, 2594 |
| TspGWI | ACGGA | 2 cut(s) | 339, 1418 |
| TspRI | CASTG | 2 cut(s) | 1393, 2935 |
| VneI | GTGCAC | 1 cut(s) | 2840 |
| VpaK11BI | GGWCC | 1 cut(s) | 1079 |
| VspI | ATTAAT | 1 cut(s) | 1377 |
| XapI | RAATTY | 8 cut(s) | 8, 469, 730, 1227, 1236, 1711, 1948, 2131 |
| XbaI | TCTAGA | 1 cut(s) | 2803 |
| XceI | RCATGY | 3 cut(s) | 1302, 2068, 2145 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 268 |
| XhoI | CTCGAG | 1 cut(s) | 293 |
| XmaJI | CCTAGG | 1 cut(s) | 2522 |
| XmnI | GAANNNNTTC | 3 cut(s) | 432, 1064, 2277 |
| XspI | CTAG | 9 cut(s) | 788, 872, 1142, 1157, 1289, 1445, 1869, 2523, 2804 |
| Zsp2I | ATGCAT | 4 cut(s) | 256, 1192, 1261, 1437 |