TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 46 - 205 | 7.6e-47 | TIR domain |
| TIR_2 | PF13676 | 52 - 138 | 9.8e-12 | TIR domain |
| NB-ARC | PF00931 | 223 - 393 | 1.9e-19 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 464 - 534 | 4.6e-11 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 615 - 714 | 3.5e-11 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 633 - 717 | 3.7e-08 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_13 | PF23286 | 768 - 860 | 4.3e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1596 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 26 |
| Acc65I | GGTACC | 1 cut(s) | 426 |
| AccB1I | GGYRCC | 2 cut(s) | 426, 3076 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2634 |
| AccII | CGCG | 1 cut(s) | 23 |
| AciI | CCGC | 5 cut(s) | 95, 140, 738, 2433, 3144 |
| AclWI | GGATC | 5 cut(s) | 118, 370, 404, 417, 1376 |
| AcoI | YGGCCR | 1 cut(s) | 389 |
| AcuI | CTGAAG | 4 cut(s) | 93, 612, 816, 1629 |
| AfaI | GTAC | 8 cut(s) | 423, 428, 669, 837, 1506, 1789, 2228, 2946 |
| AflIII | ACRYGT | 1 cut(s) | 3123 |
| AjnI | CCWGG | 4 cut(s) | 930, 2329, 3131, 3153 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 2188, 2220, 2666, 2698, 2864, 2896 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 693, 725 |
| Alw21I | GWGCWC | 2 cut(s) | 120, 3153 |
| Alw26I | GTCTC | 4 cut(s) | 144, 666, 2470, 2632 |
| Alw44I | GTGCAC | 1 cut(s) | 3149 |
| AlwI | GGATC | 5 cut(s) | 118, 370, 404, 417, 1376 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 71 |
| Ama87I | CYCGRG | 2 cut(s) | 147, 1937 |
| AoxI | GGCC | 8 cut(s) | 163, 389, 847, 1116, 1122, 1237, 1518, 2437 |
| ApaLI | GTGCAC | 1 cut(s) | 3149 |
| ApeKI | GCWGC | 9 cut(s) | 527, 827, 1044, 1926, 2544, 2897, 3016, 3141, 3216 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 41, 73, 2121, 2153 |
| AseI | ATTAAT | 1 cut(s) | 1914 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 203, 339, 1166 |
| Asp718I | GGTACC | 1 cut(s) | 426 |
| AspLEI | GCGC | 2 cut(s) | 25, 2913 |
| AspS9I | GGNCC | 2 cut(s) | 1519, 1732 |
| AsuC2I | CCSGG | 1 cut(s) | 1949 |
| AsuHPI | GGTGA | 7 cut(s) | 109, 458, 946, 1596, 2288, 2698, 3071 |
| AsuII | TTCGAA | 1 cut(s) | 3242 |
| AvaI | CYCGRG | 2 cut(s) | 147, 1937 |
| AvaII | GGWCC | 1 cut(s) | 1732 |
| BaeGI | GKGCMC | 1 cut(s) | 3153 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1206, 1239 |
| BamHI | GGATCC | 1 cut(s) | 409 |
| BanI | GGYRCC | 2 cut(s) | 426, 3076 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2165, 2197 |
| BauI | CACGAG | 2 cut(s) | 663, 3006 |
| BbsI | GAAGAC | 4 cut(s) | 42, 81, 90, 2420 |
| Bbv12I | GWGCWC | 2 cut(s) | 120, 3153 |
| BbvI | GCAGC | 9 cut(s) | 539, 839, 1056, 1913, 2531, 2884, 3003, 3128, 3203 |
| BccI | CCATC | 6 cut(s) | 498, 849, 914, 1307, 1960, 2012 |
| BceAI | ACGGC | 4 cut(s) | 124, 528, 1252, 2245 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 36, 70, 519, 553, 1918, 1952 |
| BciT130I | CCWGG | 4 cut(s) | 932, 2331, 3133, 3155 |
| BciVI | GTATCC | 1 cut(s) | 136 |
| BclI | TGATCA | 3 cut(s) | 1096, 2287, 2695 |
| BcnI | CCSGG | 1 cut(s) | 1949 |
| BcoDI | GTCTC | 4 cut(s) | 144, 666, 2470, 2632 |
| BfaI | CTAG | 4 cut(s) | 851, 1457, 1466, 1995 |
| BfmI | CTRYAG | 1 cut(s) | 1488 |
| BfuI | GTATCC | 1 cut(s) | 136 |
| BglII | AGATCT | 1 cut(s) | 1538 |
| BisI | GCNGC | 9 cut(s) | 528, 828, 1045, 1927, 2545, 2898, 3017, 3142, 3217 |
| BlsI | GCNGC | 9 cut(s) | 529, 829, 1046, 1928, 2546, 2899, 3018, 3143, 3218 |
| BmcAI | AGTACT | 2 cut(s) | 1506, 2946 |
| Bme1390I | CCNGG | 5 cut(s) | 932, 1949, 2331, 3133, 3155 |
| Bme18I | GGWCC | 1 cut(s) | 1732 |
| BmeT110I | CYCGRG | 2 cut(s) | 147, 1937 |
| BmgT120I | GGNCC | 2 cut(s) | 1519, 1732 |
| BmiI | GGNNCC | 4 cut(s) | 411, 428, 1734, 3078 |
| BmrFI | CCNGG | 5 cut(s) | 932, 1949, 2331, 3133, 3155 |
| BpiI | GAAGAC | 4 cut(s) | 42, 81, 90, 2420 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 499, 531 |
| BpmI | CTGGAG | 3 cut(s) | 1589, 2352, 2656 |
| Bpu14I | TTCGAA | 1 cut(s) | 3242 |
| BpuEI | CTTGAG | 4 cut(s) | 301, 701, 1853, 2494 |
| BpuMI | CCSGG | 1 cut(s) | 1949 |
| BsaBI | GATNNNNATC | 2 cut(s) | 284, 2286 |
| BsaJI | CCNNGG | 2 cut(s) | 1119, 3131 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 28, 2629, 2659 |
| Bse118I | RCCGGY | 1 cut(s) | 391 |
| Bse1I | ACTGG | 3 cut(s) | 26, 1000, 2154 |
| Bse3DI | GCAATG | 2 cut(s) | 118, 1407 |
| Bse8I | GATNNNNATC | 2 cut(s) | 284, 2286 |
| BseBI | CCWGG | 4 cut(s) | 932, 2331, 3133, 3155 |
| BseDI | CCNNGG | 2 cut(s) | 1119, 3131 |
| BseGI | GGATG | 9 cut(s) | 311, 337, 529, 643, 1654, 1807, 1971, 1993, 2342 |
| BseJI | GATNNNNATC | 2 cut(s) | 284, 2286 |
| BseMI | GCAATG | 2 cut(s) | 118, 1407 |
| BseMII | CTCAG | 3 cut(s) | 78, 1791, 2753 |
| BseNI | ACTGG | 3 cut(s) | 26, 1000, 2154 |
| BseRI | GAGGAG | 2 cut(s) | 104, 2477 |
| BseSI | GKGCMC | 1 cut(s) | 3153 |
| BseXI | GCAGC | 9 cut(s) | 539, 839, 1056, 1913, 2531, 2884, 3003, 3128, 3203 |
| BseYI | CCCAGC | 1 cut(s) | 2093 |
| BsgI | GTGCAG | 1 cut(s) | 490 |
| Bsh1236I | CGCG | 1 cut(s) | 23 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2353 |
| BshFI | GGCC | 8 cut(s) | 165, 391, 849, 1118, 1124, 1239, 1520, 2439 |
| BshNI | GGYRCC | 2 cut(s) | 426, 3076 |
| BsiEI | CGRYCG | 1 cut(s) | 2353 |
| BsiHKAI | GWGCWC | 2 cut(s) | 120, 3153 |
| BsiHKCI | CYCGRG | 2 cut(s) | 147, 1937 |
| BsiSI | CCGG | 2 cut(s) | 392, 1949 |
| BslFI | GGGAC | 1 cut(s) | 1718 |
| BsmAI | GTCTC | 4 cut(s) | 144, 666, 2470, 2632 |
| BsmBI | CGTCTC | 1 cut(s) | 2470 |
| BsmFI | GGGAC | 1 cut(s) | 1718 |
| BsmI | GAATGC | 1 cut(s) | 1168 |
| BsnI | GGCC | 8 cut(s) | 165, 391, 849, 1118, 1124, 1239, 1520, 2439 |
| BsoBI | CYCGRG | 2 cut(s) | 147, 1937 |
| Bsp119I | TTCGAA | 1 cut(s) | 3242 |
| Bsp1286I | GDGCHC | 2 cut(s) | 120, 3153 |
| Bsp1407I | TGTACA | 2 cut(s) | 667, 1787 |
| BspACI | CCGC | 5 cut(s) | 95, 140, 738, 2433, 3144 |
| BspANI | GGCC | 8 cut(s) | 165, 391, 849, 1118, 1124, 1239, 1520, 2439 |
| BspCNI | CTCAG | 3 cut(s) | 77, 1792, 2752 |
| BspFNI | CGCG | 1 cut(s) | 23 |
| BspHI | TCATGA | 1 cut(s) | 1642 |
| BspLI | GGNNCC | 4 cut(s) | 411, 428, 1734, 3078 |
| BspPI | GGATC | 5 cut(s) | 118, 370, 404, 417, 1376 |
| BspQI | GCTCTTC | 1 cut(s) | 213 |
| BspT104I | TTCGAA | 1 cut(s) | 3242 |
| BspT107I | GGYRCC | 2 cut(s) | 426, 3076 |
| BsrDI | GCAATG | 2 cut(s) | 118, 1407 |
| BsrFI | RCCGGY | 1 cut(s) | 391 |
| BsrGI | TGTACA | 2 cut(s) | 667, 1787 |
| BsrI | ACTGG | 3 cut(s) | 26, 1000, 2154 |
| BssAI | RCCGGY | 1 cut(s) | 391 |
| BssECI | CCNNGG | 2 cut(s) | 1119, 3131 |
| BssSI | CACGAG | 2 cut(s) | 663, 3006 |
| BssT1I | CCWWGG | 1 cut(s) | 1119 |
| Bst2BI | CACGAG | 2 cut(s) | 663, 3006 |
| Bst2UI | CCWGG | 4 cut(s) | 932, 2331, 3133, 3155 |
| Bst4CI | ACNGT | 8 cut(s) | 426, 1787, 2186, 2226, 2270, 2354, 2481, 2829 |
| Bst6I | CTCTTC | 6 cut(s) | 213, 264, 588, 2723, 2740, 3168 |
| BstAUI | TGTACA | 2 cut(s) | 667, 1787 |
| BstBI | TTCGAA | 1 cut(s) | 3242 |
| BstC8I | GCNNGC | 5 cut(s) | 1079, 1302, 1452, 1618, 2437 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 132, 1727 |
| BstF5I | GGATG | 9 cut(s) | 311, 337, 529, 643, 1654, 1807, 1971, 1993, 2342 |
| BstFNI | CGCG | 1 cut(s) | 23 |
| BstHHI | GCGC | 2 cut(s) | 25, 2913 |
| BstMAI | GTCTC | 4 cut(s) | 144, 666, 2470, 2632 |
| BstMCI | CGRYCG | 1 cut(s) | 2353 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 308, 611, 744, 1460, 1564, 1626 |
| BstNI | CCWGG | 4 cut(s) | 932, 2331, 3133, 3155 |
| BstNSI | RCATGY | 2 cut(s) | 1416, 3127 |
| BstSCI | CCNGG | 5 cut(s) | 930, 1947, 2329, 3131, 3153 |
| BstSFI | CTRYAG | 1 cut(s) | 1488 |
| BstSLI | GKGCMC | 1 cut(s) | 3153 |
| BstUI | CGCG | 1 cut(s) | 23 |
| BstV1I | GCAGC | 9 cut(s) | 539, 839, 1056, 1913, 2531, 2884, 3003, 3128, 3203 |
| BstV2I | GAAGAC | 4 cut(s) | 42, 81, 90, 2420 |
| BstX2I | RGATCY | 4 cut(s) | 123, 409, 1381, 1538 |
| BstYI | RGATCY | 4 cut(s) | 123, 409, 1381, 1538 |
| BsuI | GTATCC | 1 cut(s) | 136 |
| BsuRI | GGCC | 8 cut(s) | 165, 391, 849, 1118, 1124, 1239, 1520, 2439 |
| BtsCI | GGATG | 9 cut(s) | 311, 337, 529, 643, 1654, 1807, 1971, 1993, 2342 |
| BtsIMutI | CAGTG | 1 cut(s) | 2222 |
| Cac8I | GCNNGC | 5 cut(s) | 1079, 1302, 1452, 1618, 2437 |
| CaiI | CAGNNNCTG | 1 cut(s) | 71 |
| CciI | TCATGA | 1 cut(s) | 1642 |
| CfoI | GCGC | 2 cut(s) | 25, 2913 |
| Cfr10I | RCCGGY | 1 cut(s) | 391 |
| Cfr13I | GGNCC | 2 cut(s) | 1519, 1732 |
| CseI | GACGC | 3 cut(s) | 29, 3056, 3120 |
| CsiI | ACCWGGT | 1 cut(s) | 3153 |
| Csp6I | GTAC | 8 cut(s) | 422, 427, 668, 836, 1505, 1788, 2227, 2945 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2502, 2537 |
| CviQI | GTAC | 8 cut(s) | 422, 427, 668, 836, 1505, 1788, 2227, 2945 |
| DraI | TTTAAA | 2 cut(s) | 630, 1779 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 26 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 26 |
| EaeI | YGGCCR | 1 cut(s) | 389 |
| Eam1104I | CTCTTC | 6 cut(s) | 213, 264, 588, 2723, 2740, 3168 |
| EarI | CTCTTC | 6 cut(s) | 213, 264, 588, 2723, 2740, 3168 |
| Eco130I | CCWWGG | 1 cut(s) | 1119 |
| Eco147I | AGGCCT | 2 cut(s) | 849, 1124 |
| Eco47I | GGWCC | 1 cut(s) | 1732 |
| Eco57I | CTGAAG | 4 cut(s) | 93, 612, 816, 1629 |
| Eco88I | CYCGRG | 2 cut(s) | 147, 1937 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 132, 1727 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1519, 1732 |
| EcoRI | GAATTC | 2 cut(s) | 1841, 2750 |
| EcoRII | CCWGG | 4 cut(s) | 930, 2329, 3131, 3153 |
| EcoT14I | CCWWGG | 1 cut(s) | 1119 |
| EcoT22I | ATGCAT | 2 cut(s) | 1375, 1560 |
| ErhI | CCWWGG | 1 cut(s) | 1119 |
| Esp3I | CGTCTC | 1 cut(s) | 2470 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 663, 695 |
| FaqI | GGGAC | 1 cut(s) | 1718 |
| FauI | CCCGC | 2 cut(s) | 731, 2440 |
| FbaI | TGATCA | 3 cut(s) | 1096, 2287, 2695 |
| Fnu4HI | GCNGC | 9 cut(s) | 528, 828, 1045, 1927, 2545, 2898, 3017, 3142, 3217 |
| FokI | GGATG | 9 cut(s) | 298, 344, 536, 630, 1661, 1794, 1978, 2000, 2349 |
| Fsp4HI | GCNGC | 9 cut(s) | 528, 828, 1045, 1927, 2545, 2898, 3017, 3142, 3217 |
| FspBI | CTAG | 4 cut(s) | 851, 1457, 1466, 1995 |
| GlaI | GCGC | 2 cut(s) | 24, 2912 |
| GluI | GCNGC | 9 cut(s) | 528, 828, 1045, 1927, 2545, 2898, 3017, 3142, 3217 |
| GsaI | CCCAGC | 1 cut(s) | 2097 |
| GsuI | CTGGAG | 3 cut(s) | 1589, 2352, 2656 |
| HaeIII | GGCC | 8 cut(s) | 165, 391, 849, 1118, 1124, 1239, 1520, 2439 |
| HapII | CCGG | 2 cut(s) | 392, 1949 |
| HgaI | GACGC | 3 cut(s) | 29, 3056, 3120 |
| HhaI | GCGC | 2 cut(s) | 25, 2913 |
| Hin6I | GCGC | 2 cut(s) | 23, 2911 |
| HinP1I | GCGC | 2 cut(s) | 23, 2911 |
| HincII | GTYRAC | 2 cut(s) | 1891, 2574 |
| HindII | GTYRAC | 2 cut(s) | 1891, 2574 |
| HindIII | AAGCTT | 2 cut(s) | 1832, 2396 |
| HpaI | GTTAAC | 1 cut(s) | 2574 |
| HpaII | CCGG | 2 cut(s) | 392, 1949 |
| HphI | GGTGA | 7 cut(s) | 109, 458, 946, 1596, 2288, 2698, 3071 |
| Hpy166II | GTNNAC | 9 cut(s) | 546, 668, 772, 1255, 1268, 1891, 2574, 2966, 3151 |
| Hpy8I | GTNNAC | 9 cut(s) | 546, 668, 772, 1255, 1268, 1891, 2574, 2966, 3151 |
| Hpy99I | CGWCG | 4 cut(s) | 23, 83, 110, 560 |
| HpyCH4III | ACNGT | 8 cut(s) | 426, 1787, 2186, 2226, 2270, 2354, 2481, 2829 |
| HpyCH4IV | ACGT | 4 cut(s) | 619, 1257, 1624, 2968 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 308, 611, 744, 1460, 1564, 1626 |
| HpySE526I | ACGT | 4 cut(s) | 619, 1257, 1624, 2968 |
| HspAI | GCGC | 2 cut(s) | 23, 2911 |
| KpnI | GGTACC | 1 cut(s) | 430 |
| Ksp22I | TGATCA | 3 cut(s) | 1096, 2287, 2695 |
| KspAI | GTTAAC | 1 cut(s) | 2574 |
| LguI | GCTCTTC | 1 cut(s) | 213 |
| LmnI | GCTCC | 2 cut(s) | 2464, 2506 |
| Lsp1109I | GCAGC | 9 cut(s) | 539, 839, 1056, 1913, 2531, 2884, 3003, 3128, 3203 |
| MabI | ACCWGGT | 1 cut(s) | 3153 |
| MaeI | CTAG | 4 cut(s) | 851, 1457, 1466, 1995 |
| MaeII | ACGT | 4 cut(s) | 619, 1257, 1624, 2968 |
| MaeIII | GTNAC | 4 cut(s) | 1316, 1602, 2264, 2645 |
| MfeI | CAATTG | 7 cut(s) | 264, 380, 756, 780, 1209, 2025, 2629 |
| MflI | RGATCY | 4 cut(s) | 123, 409, 1381, 1538 |
| MhlI | GDGCHC | 2 cut(s) | 120, 3153 |
| MlyI | GAGTC | 9 cut(s) | 7, 56, 281, 668, 1556, 1610, 2124, 2131, 3043 |
| MmeI | TCCRAC | 6 cut(s) | 579, 631, 984, 1798, 2225, 2373 |
| Mph1103I | ATGCAT | 2 cut(s) | 1375, 1560 |
| MroXI | GAANNNNTTC | 3 cut(s) | 203, 339, 1166 |
| MseI | TTAA | 9 cut(s) | 629, 822, 1778, 1914, 2040, 2390, 2573, 2958, 2985 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1647 |
| MspA1I | CMGCKG | 1 cut(s) | 2435 |
| MspI | CCGG | 2 cut(s) | 392, 1949 |
| MspR9I | CCNGG | 5 cut(s) | 932, 1949, 2331, 3133, 3155 |
| MunI | CAATTG | 7 cut(s) | 264, 380, 756, 780, 1209, 2025, 2629 |
| Mva1269I | GAATGC | 1 cut(s) | 1168 |
| MvaI | CCWGG | 4 cut(s) | 932, 2331, 3133, 3155 |
| MvnI | CGCG | 1 cut(s) | 23 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 308, 611, 744, 1460, 1564, 1626 |
| NciI | CCSGG | 1 cut(s) | 1949 |
| NlaIV | GGNNCC | 4 cut(s) | 411, 428, 1734, 3078 |
| NmuCI | GTSAC | 3 cut(s) | 1602, 2264, 2645 |
| NsiI | ATGCAT | 2 cut(s) | 1375, 1560 |
| NspI | RCATGY | 2 cut(s) | 1416, 3127 |
| NspV | TTCGAA | 1 cut(s) | 3242 |
| PaeR7I | CTCGAG | 2 cut(s) | 147, 1937 |
| PagI | TCATGA | 1 cut(s) | 1642 |
| PceI | AGGCCT | 2 cut(s) | 849, 1124 |
| PciI | ACATGT | 1 cut(s) | 3123 |
| PciSI | GCTCTTC | 1 cut(s) | 213 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 84, 1045 |
| PctI | GAATGC | 1 cut(s) | 1168 |
| PdmI | GAANNNNTTC | 3 cut(s) | 203, 339, 1166 |
| PfeI | GAWTC | 7 cut(s) | 474, 927, 1821, 1970, 2597, 2922, 2999 |
| PflFI | GACNNNGTC | 1 cut(s) | 494 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2634 |
| PfoI | TCCNGGA | 2 cut(s) | 1947, 2329 |
| PkrI | GCNGC | 9 cut(s) | 529, 829, 1046, 1928, 2546, 2899, 3018, 3143, 3218 |
| PleI | GAGTC | 9 cut(s) | 7, 56, 280, 667, 1556, 1609, 2124, 2130, 3043 |
| PpsI | GAGTC | 9 cut(s) | 7, 56, 280, 667, 1556, 1609, 2124, 2130, 3043 |
| PpuMI | RGGWCCY | 1 cut(s) | 1732 |
| PscI | ACATGT | 1 cut(s) | 3123 |
| PshBI | ATTAAT | 1 cut(s) | 1914 |
| PsiI | TTATAA | 1 cut(s) | 1596 |
| Psp5II | RGGWCCY | 1 cut(s) | 1732 |
| Psp6I | CCWGG | 4 cut(s) | 930, 2329, 3131, 3153 |
| PspFI | CCCAGC | 1 cut(s) | 2093 |
| PspGI | CCWGG | 4 cut(s) | 930, 2329, 3131, 3153 |
| PspN4I | GGNNCC | 4 cut(s) | 411, 428, 1734, 3078 |
| PspPPI | RGGWCCY | 1 cut(s) | 1732 |
| PstNI | CAGNNNCTG | 1 cut(s) | 71 |
| PsuI | RGATCY | 4 cut(s) | 123, 409, 1381, 1538 |
| PsyI | GACNNNGTC | 1 cut(s) | 494 |
| RsaI | GTAC | 8 cut(s) | 423, 428, 669, 837, 1506, 1789, 2228, 2946 |
| RsaNI | GTAC | 8 cut(s) | 422, 427, 668, 836, 1505, 1788, 2227, 2945 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1647 |
| SapI | GCTCTTC | 1 cut(s) | 213 |
| SaqAI | TTAA | 9 cut(s) | 629, 822, 1778, 1914, 2040, 2390, 2573, 2958, 2985 |
| SatI | GCNGC | 9 cut(s) | 528, 828, 1045, 1927, 2545, 2898, 3017, 3142, 3217 |
| Sau96I | GGNCC | 2 cut(s) | 1519, 1732 |
| ScaI | AGTACT | 2 cut(s) | 1506, 2946 |
| SchI | GAGTC | 9 cut(s) | 7, 56, 281, 668, 1556, 1610, 2124, 2131, 3043 |
| ScrFI | CCNGG | 5 cut(s) | 932, 1949, 2331, 3133, 3155 |
| SduI | GDGCHC | 2 cut(s) | 120, 3153 |
| SexAI | ACCWGGT | 1 cut(s) | 3153 |
| SfcI | CTRYAG | 1 cut(s) | 1488 |
| Sfr274I | CTCGAG | 2 cut(s) | 147, 1937 |
| SfuI | TTCGAA | 1 cut(s) | 3242 |
| SinI | GGWCC | 1 cut(s) | 1732 |
| SlaI | CTCGAG | 2 cut(s) | 147, 1937 |
| SmiI | ATTTAAAT | 2 cut(s) | 630, 1779 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1647 |
| SmlI | CTYRAG | 6 cut(s) | 147, 316, 680, 1868, 1937, 2473 |
| SmoI | CTYRAG | 6 cut(s) | 147, 316, 680, 1868, 1937, 2473 |
| SseBI | AGGCCT | 2 cut(s) | 849, 1124 |
| SsiI | CCGC | 5 cut(s) | 95, 140, 738, 2433, 3144 |
| SspMI | CTAG | 4 cut(s) | 851, 1457, 1466, 1995 |
| StuI | AGGCCT | 2 cut(s) | 849, 1124 |
| StyD4I | CCNGG | 5 cut(s) | 930, 1947, 2329, 3131, 3153 |
| StyI | CCWWGG | 1 cut(s) | 1119 |
| SwaI | ATTTAAAT | 2 cut(s) | 630, 1779 |
| TaaI | ACNGT | 8 cut(s) | 426, 1787, 2186, 2226, 2270, 2354, 2481, 2829 |
| TaiI | ACGT | 4 cut(s) | 622, 1260, 1627, 2971 |
| TaqI | TCGA | 6 cut(s) | 148, 1404, 1938, 2593, 3091, 3242 |
| TaqII | GACCGA | 1 cut(s) | 1682 |
| TatI | WGTACW | 4 cut(s) | 667, 1504, 1787, 2944 |
| TfiI | GAWTC | 7 cut(s) | 474, 927, 1821, 1970, 2597, 2922, 2999 |
| Tru1I | TTAA | 9 cut(s) | 629, 822, 1778, 1914, 2040, 2390, 2573, 2958, 2985 |
| Tru9I | TTAA | 9 cut(s) | 629, 822, 1778, 1914, 2040, 2390, 2573, 2958, 2985 |
| TscAI | CASTG | 1 cut(s) | 2229 |
| TseFI | GTSAC | 3 cut(s) | 1602, 2264, 2645 |
| TseI | GCWGC | 9 cut(s) | 527, 827, 1044, 1926, 2544, 2897, 3016, 3141, 3216 |
| Tsp45I | GTSAC | 3 cut(s) | 1602, 2264, 2645 |
| TspGWI | ACGGA | 3 cut(s) | 1374, 3018, 3042 |
| TspRI | CASTG | 1 cut(s) | 2229 |
| Tth111I | GACNNNGTC | 1 cut(s) | 494 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2634 |
| VneI | GTGCAC | 1 cut(s) | 3149 |
| VpaK11BI | GGWCC | 1 cut(s) | 1732 |
| VspI | ATTAAT | 1 cut(s) | 1914 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 132, 1727 |
| XbaI | TCTAGA | 2 cut(s) | 1465, 1994 |
| XceI | RCATGY | 2 cut(s) | 1416, 3127 |
| XhoI | CTCGAG | 2 cut(s) | 147, 1937 |
| XmnI | GAANNNNTTC | 3 cut(s) | 203, 339, 1166 |
| XspI | CTAG | 4 cut(s) | 851, 1457, 1466, 1995 |
| ZrmI | AGTACT | 2 cut(s) | 1506, 2946 |
| Zsp2I | ATGCAT | 2 cut(s) | 1375, 1560 |