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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 364 |
| AccII | CGCG | 7 cut(s) | 8, 101, 180, 269, 275, 581, 594 |
| AclWI | GGATC | 1 cut(s) | 779 |
| AcoI | YGGCCR | 6 cut(s) | 326, 387, 453, 461, 471, 570 |
| AcsI | RAATTY | 3 cut(s) | 252, 546, 639 |
| AcuI | CTGAAG | 2 cut(s) | 69, 849 |
| AdeI | CACNNNGTG | 1 cut(s) | 857 |
| AfaI | GTAC | 1 cut(s) | 183 |
| AgsI | TTSAA | 2 cut(s) | 188, 488 |
| AjnI | CCWGG | 6 cut(s) | 199, 351, 476, 888, 897, 945 |
| AleI | CACNNNNGTG | 2 cut(s) | 362, 792 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 945, 977 |
| AluBI | AGCT | 6 cut(s) | 281, 398, 491, 664, 923, 939 |
| AluI | AGCT | 6 cut(s) | 281, 398, 491, 664, 923, 939 |
| Alw26I | GTCTC | 5 cut(s) | 98, 233, 347, 815, 879 |
| AlwI | GGATC | 1 cut(s) | 779 |
| Ama87I | CYCGRG | 1 cut(s) | 110 |
| AoxI | GGCC | 9 cut(s) | 296, 326, 387, 453, 461, 471, 570, 903, 979 |
| ApeKI | GCWGC | 5 cut(s) | 125, 128, 425, 923, 926 |
| ApoI | RAATTY | 3 cut(s) | 252, 546, 639 |
| AscI | GGCGCGCC | 1 cut(s) | 267 |
| AspLEI | GCGC | 5 cut(s) | 269, 271, 581, 596, 800 |
| AspS9I | GGNCC | 3 cut(s) | 245, 585, 904 |
| AsuC2I | CCSGG | 2 cut(s) | 264, 314 |
| AsuHPI | GGTGA | 5 cut(s) | 302, 499, 730, 766, 776 |
| AsuNHI | GCTAGC | 1 cut(s) | 734 |
| AvaI | CYCGRG | 1 cut(s) | 110 |
| AvaII | GGWCC | 2 cut(s) | 245, 585 |
| BaeGI | GKGCMC | 1 cut(s) | 369 |
| BanI | GGYRCC | 1 cut(s) | 364 |
| BbsI | GAAGAC | 1 cut(s) | 230 |
| BbvI | GCAGC | 5 cut(s) | 112, 115, 412, 910, 913 |
| BccI | CCATC | 2 cut(s) | 315, 761 |
| BceAI | ACGGC | 2 cut(s) | 219, 283 |
| BciT130I | CCWGG | 6 cut(s) | 201, 353, 478, 890, 899, 947 |
| BciVI | GTATCC | 2 cut(s) | 4, 849 |
| BcnI | CCSGG | 2 cut(s) | 264, 314 |
| BcoDI | GTCTC | 5 cut(s) | 98, 233, 347, 815, 879 |
| BfaI | CTAG | 4 cut(s) | 219, 537, 735, 884 |
| BfmI | CTRYAG | 2 cut(s) | 426, 603 |
| BfoI | RGCGCY | 1 cut(s) | 801 |
| BfuI | GTATCC | 2 cut(s) | 4, 849 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 757 |
| BisI | GCNGC | 8 cut(s) | 126, 129, 143, 426, 573, 903, 924, 927 |
| BlsI | GCNGC | 8 cut(s) | 127, 130, 144, 427, 574, 904, 925, 928 |
| Bme1390I | CCNGG | 8 cut(s) | 201, 264, 314, 353, 478, 890, 899, 947 |
| Bme18I | GGWCC | 2 cut(s) | 245, 585 |
| BmeT110I | CYCGRG | 1 cut(s) | 110 |
| BmgT120I | GGNCC | 3 cut(s) | 245, 585, 904 |
| BmiI | GGNNCC | 5 cut(s) | 93, 117, 246, 366, 587 |
| BmrFI | CCNGG | 8 cut(s) | 201, 264, 314, 353, 478, 890, 899, 947 |
| BmrI | ACTGGG | 1 cut(s) | 829 |
| BmsI | GCATC | 3 cut(s) | 22, 205, 523 |
| BmtI | GCTAGC | 1 cut(s) | 738 |
| BmuI | ACTGGG | 1 cut(s) | 829 |
| BpiI | GAAGAC | 1 cut(s) | 230 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 213, 245 |
| BpmI | CTGGAG | 1 cut(s) | 222 |
| Bpu10I | CCTNAGC | 1 cut(s) | 72 |
| BpuEI | CTTGAG | 2 cut(s) | 861, 903 |
| BpuMI | CCSGG | 2 cut(s) | 264, 314 |
| BsaI | GGTCTC | 1 cut(s) | 233 |
| BsaJI | CCNNGG | 4 cut(s) | 351, 477, 888, 982 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 48, 78, 945, 975 |
| Bse118I | RCCGGY | 4 cut(s) | 76, 324, 509, 575 |
| Bse1I | ACTGG | 2 cut(s) | 168, 835 |
| Bse3DI | GCAATG | 1 cut(s) | 729 |
| BseBI | CCWGG | 6 cut(s) | 201, 353, 478, 890, 899, 947 |
| BseDI | CCNNGG | 4 cut(s) | 351, 477, 888, 982 |
| BseGI | GGATG | 1 cut(s) | 955 |
| BseMI | GCAATG | 1 cut(s) | 729 |
| BseMII | CTCAG | 2 cut(s) | 63, 413 |
| BseNI | ACTGG | 2 cut(s) | 168, 835 |
| BsePI | GCGCGC | 1 cut(s) | 267 |
| BseRI | GAGGAG | 2 cut(s) | 186, 335 |
| BseSI | GKGCMC | 1 cut(s) | 369 |
| BseXI | GCAGC | 5 cut(s) | 112, 115, 412, 910, 913 |
| BsgI | GTGCAG | 1 cut(s) | 132 |
| Bsh1236I | CGCG | 7 cut(s) | 8, 101, 180, 269, 275, 581, 594 |
| BshFI | GGCC | 9 cut(s) | 298, 328, 389, 455, 463, 473, 572, 905, 981 |
| BshNI | GGYRCC | 1 cut(s) | 364 |
| BsiHKCI | CYCGRG | 1 cut(s) | 110 |
| BslFI | GGGAC | 4 cut(s) | 11, 258, 571, 638 |
| BsmAI | GTCTC | 5 cut(s) | 98, 233, 347, 815, 879 |
| BsmBI | CGTCTC | 1 cut(s) | 347 |
| BsmFI | GGGAC | 4 cut(s) | 11, 258, 571, 638 |
| BsnI | GGCC | 9 cut(s) | 298, 328, 389, 455, 463, 473, 572, 905, 981 |
| Bso31I | GGTCTC | 1 cut(s) | 233 |
| BsoBI | CYCGRG | 1 cut(s) | 110 |
| Bsp1286I | GDGCHC | 1 cut(s) | 369 |
| Bsp143I | GATC | 4 cut(s) | 402, 610, 742, 771 |
| BspANI | GGCC | 9 cut(s) | 298, 328, 389, 455, 463, 473, 572, 905, 981 |
| BspCNI | CTCAG | 2 cut(s) | 64, 412 |
| BspFNI | CGCG | 7 cut(s) | 8, 101, 180, 269, 275, 581, 594 |
| BspLI | GGNNCC | 5 cut(s) | 93, 117, 246, 366, 587 |
| BspMAI | CTGCAG | 1 cut(s) | 430 |
| BspOI | GCTAGC | 1 cut(s) | 738 |
| BspPI | GGATC | 1 cut(s) | 779 |
| BspT107I | GGYRCC | 1 cut(s) | 364 |
| BspTNI | GGTCTC | 1 cut(s) | 233 |
| BsrDI | GCAATG | 1 cut(s) | 729 |
| BsrFI | RCCGGY | 4 cut(s) | 76, 324, 509, 575 |
| BsrI | ACTGG | 2 cut(s) | 168, 835 |
| BssAI | RCCGGY | 4 cut(s) | 76, 324, 509, 575 |
| BssECI | CCNNGG | 4 cut(s) | 351, 477, 888, 982 |
| BssHII | GCGCGC | 1 cut(s) | 267 |
| BssMI | GATC | 4 cut(s) | 402, 610, 742, 771 |
| Bst2UI | CCWGG | 6 cut(s) | 201, 353, 478, 890, 899, 947 |
| Bst4CI | ACNGT | 3 cut(s) | 604, 809, 821 |
| BstDEI | CTNAG | 6 cut(s) | 72, 293, 370, 399, 713, 854 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 51 |
| BstF5I | GGATG | 1 cut(s) | 955 |
| BstFNI | CGCG | 7 cut(s) | 8, 101, 180, 269, 275, 581, 594 |
| BstH2I | RGCGCY | 1 cut(s) | 801 |
| BstHHI | GCGC | 5 cut(s) | 269, 271, 581, 596, 800 |
| BstKTI | GATC | 4 cut(s) | 405, 613, 745, 774 |
| BstMAI | GTCTC | 5 cut(s) | 98, 233, 347, 815, 879 |
| BstMBI | GATC | 4 cut(s) | 402, 610, 742, 771 |
| BstNI | CCWGG | 6 cut(s) | 201, 353, 478, 890, 899, 947 |
| BstSCI | CCNGG | 8 cut(s) | 199, 262, 312, 351, 476, 888, 897, 945 |
| BstSFI | CTRYAG | 2 cut(s) | 426, 603 |
| BstSLI | GKGCMC | 1 cut(s) | 369 |
| BstUI | CGCG | 7 cut(s) | 8, 101, 180, 269, 275, 581, 594 |
| BstV1I | GCAGC | 5 cut(s) | 112, 115, 412, 910, 913 |
| BstV2I | GAAGAC | 1 cut(s) | 230 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 794 |
| BsuI | GTATCC | 2 cut(s) | 4, 849 |
| BsuRI | GGCC | 9 cut(s) | 298, 328, 389, 455, 463, 473, 572, 905, 981 |
| BtsCI | GGATG | 1 cut(s) | 955 |
| BtsIMutI | CAGTG | 1 cut(s) | 600 |
| CfoI | GCGC | 5 cut(s) | 269, 271, 581, 596, 800 |
| Cfr10I | RCCGGY | 4 cut(s) | 76, 324, 509, 575 |
| Cfr13I | GGNCC | 3 cut(s) | 245, 585, 904 |
| CseI | GACGC | 1 cut(s) | 14 |
| Csp6I | GTAC | 1 cut(s) | 182 |
| CviAII | CATG | 1 cut(s) | 633 |
| CviQI | GTAC | 1 cut(s) | 182 |
| DdeI | CTNAG | 6 cut(s) | 72, 293, 370, 399, 713, 854 |
| DpnI | GATC | 4 cut(s) | 404, 612, 744, 773 |
| DpnII | GATC | 4 cut(s) | 402, 610, 742, 771 |
| DraIII | CACNNNGTG | 1 cut(s) | 857 |
| EaeI | YGGCCR | 6 cut(s) | 326, 387, 453, 461, 471, 570 |
| EciI | GGCGGA | 3 cut(s) | 129, 221, 953 |
| Eco31I | GGTCTC | 1 cut(s) | 233 |
| Eco47I | GGWCC | 2 cut(s) | 245, 585 |
| Eco57I | CTGAAG | 2 cut(s) | 69, 849 |
| Eco88I | CYCGRG | 1 cut(s) | 110 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 51 |
| EcoO109I | RGGNCCY | 1 cut(s) | 245 |
| EcoRII | CCWGG | 6 cut(s) | 199, 351, 476, 888, 897, 945 |
| Esp3I | CGTCTC | 1 cut(s) | 347 |
| FaeI | CATG | 1 cut(s) | 636 |
| FaiI | YATR | 8 cut(s) | 209, 260, 634, 656, 669, 705, 710, 975 |
| FaqI | GGGAC | 4 cut(s) | 11, 258, 571, 638 |
| FatI | CATG | 1 cut(s) | 632 |
| FauI | CCCGC | 2 cut(s) | 280, 756 |
| Fnu4HI | GCNGC | 8 cut(s) | 126, 129, 143, 426, 573, 903, 924, 927 |
| FokI | GGATG | 1 cut(s) | 962 |
| Fsp4HI | GCNGC | 8 cut(s) | 126, 129, 143, 426, 573, 903, 924, 927 |
| FspBI | CTAG | 4 cut(s) | 219, 537, 735, 884 |
| GlaI | GCGC | 5 cut(s) | 268, 270, 580, 595, 799 |
| GluI | GCNGC | 8 cut(s) | 126, 129, 143, 426, 573, 903, 924, 927 |
| GsuI | CTGGAG | 1 cut(s) | 222 |
| HaeII | RGCGCY | 1 cut(s) | 801 |
| HaeIII | GGCC | 9 cut(s) | 298, 328, 389, 455, 463, 473, 572, 905, 981 |
| HgaI | GACGC | 1 cut(s) | 14 |
| HhaI | GCGC | 5 cut(s) | 269, 271, 581, 596, 800 |
| Hin1II | CATG | 1 cut(s) | 636 |
| Hin6I | GCGC | 5 cut(s) | 267, 269, 579, 594, 798 |
| HinP1I | GCGC | 5 cut(s) | 267, 269, 579, 594, 798 |
| HindIII | AAGCTT | 2 cut(s) | 489, 662 |
| HinfI | GANTC | 3 cut(s) | 106, 193, 517 |
| HphI | GGTGA | 5 cut(s) | 302, 499, 730, 766, 776 |
| Hpy166II | GTNNAC | 1 cut(s) | 67 |
| Hpy188I | TCNGA | 3 cut(s) | 402, 562, 829 |
| Hpy188III | TCNNGA | 5 cut(s) | 110, 159, 485, 530, 878 |
| Hpy8I | GTNNAC | 1 cut(s) | 67 |
| Hpy99I | CGWCG | 2 cut(s) | 101, 383 |
| HpyAV | CCTTC | 3 cut(s) | 165, 218, 514 |
| HpyCH4III | ACNGT | 3 cut(s) | 604, 809, 821 |
| HpyCH4V | TGCA | 3 cut(s) | 149, 428, 977 |
| HpyF3I | CTNAG | 6 cut(s) | 72, 293, 370, 399, 713, 854 |
| Hsp92II | CATG | 1 cut(s) | 636 |
| HspAI | GCGC | 5 cut(s) | 267, 269, 579, 594, 798 |
| KroI | GCCGGC | 2 cut(s) | 324, 575 |
| KroNI | GCCGGC | 2 cut(s) | 326, 577 |
| Kzo9I | GATC | 4 cut(s) | 402, 610, 742, 771 |
| LmnI | GCTCC | 1 cut(s) | 121 |
| Lsp1109I | GCAGC | 5 cut(s) | 112, 115, 412, 910, 913 |
| LweI | GCATC | 3 cut(s) | 22, 205, 523 |
| MaeI | CTAG | 4 cut(s) | 219, 537, 735, 884 |
| MaeIII | GTNAC | 5 cut(s) | 190, 355, 718, 803, 815 |
| MalI | GATC | 4 cut(s) | 404, 612, 744, 773 |
| MboI | GATC | 4 cut(s) | 402, 610, 742, 771 |
| MboII | GAAGA | 1 cut(s) | 230 |
| MhlI | GDGCHC | 1 cut(s) | 369 |
| MluCI | AATT | 4 cut(s) | 252, 546, 639, 823 |
| MlyI | GAGTC | 2 cut(s) | 100, 187 |
| MreI | CGCCGGCG | 1 cut(s) | 575 |
| MroNI | GCCGGC | 2 cut(s) | 324, 575 |
| MslI | CAYNNNNRTG | 2 cut(s) | 362, 792 |
| MspR9I | CCNGG | 8 cut(s) | 201, 264, 314, 353, 478, 890, 899, 947 |
| MvaI | CCWGG | 6 cut(s) | 201, 353, 478, 890, 899, 947 |
| MvnI | CGCG | 7 cut(s) | 8, 101, 180, 269, 275, 581, 594 |
| NaeI | GCCGGC | 2 cut(s) | 326, 577 |
| NciI | CCSGG | 2 cut(s) | 264, 314 |
| NdeII | GATC | 4 cut(s) | 402, 610, 742, 771 |
| NgoMIV | GCCGGC | 2 cut(s) | 324, 575 |
| NheI | GCTAGC | 1 cut(s) | 734 |
| NlaIII | CATG | 1 cut(s) | 636 |
| NlaIV | GGNNCC | 5 cut(s) | 93, 117, 246, 366, 587 |
| NmuCI | GTSAC | 4 cut(s) | 190, 355, 718, 815 |
| OliI | CACNNNNGTG | 2 cut(s) | 362, 792 |
| PaeR7I | CTCGAG | 1 cut(s) | 110 |
| PalAI | GGCGCGCC | 1 cut(s) | 267 |
| PauI | GCGCGC | 1 cut(s) | 267 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 526 |
| PdiI | GCCGGC | 2 cut(s) | 326, 577 |
| PfeI | GAWTC | 1 cut(s) | 517 |
| PfoI | TCCNGGA | 1 cut(s) | 199 |
| PkrI | GCNGC | 8 cut(s) | 127, 130, 144, 427, 574, 904, 925, 928 |
| PleI | GAGTC | 2 cut(s) | 100, 187 |
| PpsI | GAGTC | 2 cut(s) | 100, 187 |
| PpuMI | RGGWCCY | 1 cut(s) | 245 |
| Psp5II | RGGWCCY | 1 cut(s) | 245 |
| Psp6I | CCWGG | 6 cut(s) | 199, 351, 476, 888, 897, 945 |
| PspGI | CCWGG | 6 cut(s) | 199, 351, 476, 888, 897, 945 |
| PspN4I | GGNNCC | 5 cut(s) | 93, 117, 246, 366, 587 |
| PspPI | GGNCC | 3 cut(s) | 245, 585, 904 |
| PspPPI | RGGWCCY | 1 cut(s) | 245 |
| PstI | CTGCAG | 1 cut(s) | 430 |
| PteI | GCGCGC | 1 cut(s) | 267 |
| RsaI | GTAC | 1 cut(s) | 183 |
| RsaNI | GTAC | 1 cut(s) | 182 |
| RseI | CAYNNNNRTG | 2 cut(s) | 362, 792 |
| SatI | GCNGC | 8 cut(s) | 126, 129, 143, 426, 573, 903, 924, 927 |
| Sau3AI | GATC | 4 cut(s) | 402, 610, 742, 771 |
| Sau96I | GGNCC | 3 cut(s) | 245, 585, 904 |
| SchI | GAGTC | 2 cut(s) | 100, 187 |
| ScrFI | CCNGG | 8 cut(s) | 201, 264, 314, 353, 478, 890, 899, 947 |
| SduI | GDGCHC | 1 cut(s) | 369 |
| SfaNI | GCATC | 3 cut(s) | 22, 205, 523 |
| SfcI | CTRYAG | 2 cut(s) | 426, 603 |
| Sfr274I | CTCGAG | 1 cut(s) | 110 |
| SgrAI | CRCCGGYG | 1 cut(s) | 575 |
| SgsI | GGCGCGCC | 1 cut(s) | 267 |
| SinI | GGWCC | 2 cut(s) | 245, 585 |
| SlaI | CTCGAG | 1 cut(s) | 110 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 362, 792 |
| SmlI | CTYRAG | 3 cut(s) | 110, 876, 918 |
| SmoI | CTYRAG | 3 cut(s) | 110, 876, 918 |
| Sse9I | AATT | 4 cut(s) | 252, 546, 639, 823 |
| SspMI | CTAG | 4 cut(s) | 219, 537, 735, 884 |
| StyD4I | CCNGG | 8 cut(s) | 199, 262, 312, 351, 476, 888, 897, 945 |
| TaaI | ACNGT | 3 cut(s) | 604, 809, 821 |
| TaqI | TCGA | 5 cut(s) | 111, 378, 405, 520, 529 |
| TasI | AATT | 4 cut(s) | 252, 546, 639, 823 |
| TauI | GCSGC | 3 cut(s) | 145, 575, 905 |
| TfiI | GAWTC | 1 cut(s) | 517 |
| TscAI | CASTG | 1 cut(s) | 607 |
| TseFI | GTSAC | 4 cut(s) | 190, 355, 718, 815 |
| TseI | GCWGC | 5 cut(s) | 125, 128, 425, 923, 926 |
| Tsp45I | GTSAC | 4 cut(s) | 190, 355, 718, 815 |
| TspDTI | ATGAA | 2 cut(s) | 75, 966 |
| TspRI | CASTG | 1 cut(s) | 607 |
| VpaK11BI | GGWCC | 2 cut(s) | 245, 585 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 51 |
| XapI | RAATTY | 3 cut(s) | 252, 546, 639 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 943 |
| XhoI | CTCGAG | 1 cut(s) | 110 |
| XspI | CTAG | 4 cut(s) | 219, 537, 735, 884 |