TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 23 - 186 | 9.3e-51 | TIR domain |
| TIR_2 | PF13676 | 25 - 120 | 6.9e-12 | TIR domain |
| NB-ARC | PF00931 | 204 - 374 | 7.8e-19 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 486 - 553 | 4.8e-13 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 768 - 979 | 8e-17 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1838, 3561 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2864 |
| AccI | GTMKAC | 1 cut(s) | 1664 |
| AccII | CGCG | 2 cut(s) | 2669, 2708 |
| AciI | CCGC | 8 cut(s) | 504, 549, 645, 684, 1537, 1891, 1981, 2667 |
| AcoI | YGGCCR | 3 cut(s) | 3, 335, 2866 |
| AcuI | CTGAAG | 1 cut(s) | 2601 |
| AdeI | CACNNNGTG | 1 cut(s) | 73 |
| AfaI | GTAC | 3 cut(s) | 657, 2119, 3285 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 273, 2147, 2219, 2569, 2570, 2718, 2719, 2864 |
| AflIII | ACRYGT | 2 cut(s) | 3286, 3413 |
| AhlI | ACTAGT | 1 cut(s) | 289 |
| AjnI | CCWGG | 2 cut(s) | 2244, 2281 |
| Alw21I | GWGCWC | 3 cut(s) | 177, 1095, 2402 |
| Alw26I | GTCTC | 1 cut(s) | 2974 |
| Alw44I | GTGCAC | 1 cut(s) | 2398 |
| Ama87I | CYCGRG | 4 cut(s) | 499, 609, 1547, 1673 |
| AoxI | GGCC | 4 cut(s) | 3, 335, 1904, 2866 |
| ApaLI | GTGCAC | 1 cut(s) | 2398 |
| ApeKI | GCWGC | 9 cut(s) | 458, 473, 750, 1977, 2082, 2496, 2823, 3241, 3349 |
| AseI | ATTAAT | 1 cut(s) | 2316 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 291, 2586 |
| AspA2I | CCTAGG | 1 cut(s) | 1400 |
| AspLEI | GCGC | 2 cut(s) | 2681, 2759 |
| AspS9I | GGNCC | 2 cut(s) | 943, 3262 |
| AsuC2I | CCSGG | 2 cut(s) | 1674, 1675 |
| AsuHPI | GGTGA | 6 cut(s) | 404, 2129, 2201, 2297, 2656, 3523 |
| AsuII | TTCGAA | 2 cut(s) | 1960, 2909 |
| AvaI | CYCGRG | 4 cut(s) | 499, 609, 1547, 1673 |
| AvaII | GGWCC | 2 cut(s) | 943, 3262 |
| AvrII | CCTAGG | 1 cut(s) | 1400 |
| BaeGI | GKGCMC | 1 cut(s) | 2402 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BamHI | GGATCC | 3 cut(s) | 355, 2150, 2222 |
| BanII | GRGCYC | 3 cut(s) | 177, 1095, 1674 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1770, 1802 |
| BbsI | GAAGAC | 3 cut(s) | 238, 701, 3501 |
| Bbv12I | GWGCWC | 3 cut(s) | 177, 1095, 2402 |
| BbvI | GCAGC | 9 cut(s) | 470, 485, 737, 1989, 2094, 2508, 2810, 3228, 3336 |
| BccI | CCATC | 9 cut(s) | 14, 367, 444, 737, 1373, 1630, 1753, 2953, 2998 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 242, 276, 1870, 1904, 2815, 2849 |
| BciT130I | CCWGG | 2 cut(s) | 2246, 2283 |
| BciVI | GTATCC | 1 cut(s) | 91 |
| BclI | TGATCA | 1 cut(s) | 3232 |
| BcnI | CCSGG | 2 cut(s) | 1674, 1675 |
| BcoDI | GTCTC | 1 cut(s) | 2974 |
| BcuI | ACTAGT | 1 cut(s) | 289 |
| BfaI | CTAG | 8 cut(s) | 290, 602, 1070, 1401, 1955, 2057, 2079, 2102 |
| BfmI | CTRYAG | 2 cut(s) | 1665, 2824 |
| BfoI | RGCGCY | 1 cut(s) | 2760 |
| BfuI | GTATCC | 1 cut(s) | 91 |
| BglII | AGATCT | 2 cut(s) | 2104, 2485 |
| BlnI | CCTAGG | 1 cut(s) | 1400 |
| Bme1390I | CCNGG | 4 cut(s) | 1674, 1675, 2246, 2283 |
| Bme18I | GGWCC | 2 cut(s) | 943, 3262 |
| BmeT110I | CYCGRG | 4 cut(s) | 499, 609, 1547, 1673 |
| BmgT120I | GGNCC | 2 cut(s) | 943, 3262 |
| BmiI | GGNNCC | 5 cut(s) | 357, 2152, 2224, 2637, 3114 |
| BmrFI | CCNGG | 4 cut(s) | 1674, 1675, 2246, 2283 |
| BpiI | GAAGAC | 3 cut(s) | 238, 701, 3501 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 445, 477 |
| BpmI | CTGGAG | 2 cut(s) | 2317, 2998 |
| Bpu14I | TTCGAA | 2 cut(s) | 1960, 2909 |
| BpuEI | CTTGAG | 6 cut(s) | 1109, 1161, 1284, 1813, 2360, 2821 |
| BpuMI | CCSGG | 2 cut(s) | 1674, 1675 |
| Bsa29I | ATCGAT | 1 cut(s) | 2659 |
| BsaAI | YACGTR | 2 cut(s) | 2465, 3287 |
| BsaJI | CCNNGG | 5 cut(s) | 301, 1400, 1673, 1674, 3116 |
| BsaWI | WCCGGW | 1 cut(s) | 1195 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 783, 813, 2971, 3001 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 273, 2147, 2219, 2569, 2570, 2718, 2719, 2864 |
| Bse118I | RCCGGY | 1 cut(s) | 2868 |
| Bse1I | ACTGG | 8 cut(s) | 54, 946, 1323, 2178, 2300, 2407, 3095, 3534 |
| Bse3DI | GCAATG | 3 cut(s) | 1473, 2414, 3398 |
| BseBI | CCWGG | 2 cut(s) | 2246, 2283 |
| BseCI | ATCGAT | 1 cut(s) | 2659 |
| BseDI | CCNNGG | 5 cut(s) | 301, 1400, 1673, 1674, 3116 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 273, 2147, 2219, 2569, 2570, 2718, 2719, 2864 |
| BseMI | GCAATG | 3 cut(s) | 1473, 2414, 3398 |
| BseMII | CTCAG | 3 cut(s) | 71, 3080, 3461 |
| BseNI | ACTGG | 8 cut(s) | 54, 946, 1323, 2178, 2300, 2407, 3095, 3534 |
| BseRI | GAGGAG | 4 cut(s) | 198, 2216, 2969, 3433 |
| BseSI | GKGCMC | 1 cut(s) | 2402 |
| BseXI | GCAGC | 9 cut(s) | 470, 485, 737, 1989, 2094, 2508, 2810, 3228, 3336 |
| BseYI | CCCAGC | 1 cut(s) | 962 |
| BsgI | GTGCAG | 3 cut(s) | 1730, 3335, 3540 |
| Bsh1236I | CGCG | 2 cut(s) | 2669, 2708 |
| BshFI | GGCC | 4 cut(s) | 5, 337, 1906, 2868 |
| BshVI | ATCGAT | 1 cut(s) | 2659 |
| BsiHKAI | GWGCWC | 3 cut(s) | 177, 1095, 2402 |
| BsiHKCI | CYCGRG | 4 cut(s) | 499, 609, 1547, 1673 |
| BsiSI | CCGG | 4 cut(s) | 1196, 1674, 2639, 2869 |
| BslFI | GGGAC | 2 cut(s) | 2588, 2695 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 273, 2147, 2219, 2569, 2570, 2718, 2719, 2864 |
| BsmAI | GTCTC | 1 cut(s) | 2974 |
| BsmFI | GGGAC | 2 cut(s) | 2588, 2695 |
| BsmI | GAATGC | 5 cut(s) | 1109, 1182, 1305, 2723, 2783 |
| BsnI | GGCC | 4 cut(s) | 5, 337, 1906, 2868 |
| BsoBI | CYCGRG | 4 cut(s) | 499, 609, 1547, 1673 |
| Bsp119I | TTCGAA | 2 cut(s) | 1960, 2909 |
| Bsp1286I | GDGCHC | 4 cut(s) | 177, 1095, 1674, 2402 |
| Bsp1407I | TGTACA | 1 cut(s) | 2117 |
| BspACI | CCGC | 8 cut(s) | 504, 549, 645, 684, 1537, 1891, 1981, 2667 |
| BspANI | GGCC | 4 cut(s) | 5, 337, 1906, 2868 |
| BspCNI | CTCAG | 3 cut(s) | 72, 3079, 3460 |
| BspDI | ATCGAT | 1 cut(s) | 2659 |
| BspFNI | CGCG | 2 cut(s) | 2669, 2708 |
| BspHI | TCATGA | 3 cut(s) | 865, 1063, 3547 |
| BspLI | GGNNCC | 5 cut(s) | 357, 2152, 2224, 2637, 3114 |
| BspMAI | CTGCAG | 1 cut(s) | 2828 |
| BspQI | GCTCTTC | 1 cut(s) | 1100 |
| BspT104I | TTCGAA | 2 cut(s) | 1960, 2909 |
| BsrDI | GCAATG | 3 cut(s) | 1473, 2414, 3398 |
| BsrFI | RCCGGY | 1 cut(s) | 2868 |
| BsrGI | TGTACA | 1 cut(s) | 2117 |
| BsrI | ACTGG | 8 cut(s) | 54, 946, 1323, 2178, 2300, 2407, 3095, 3534 |
| BssAI | RCCGGY | 1 cut(s) | 2868 |
| BssECI | CCNNGG | 5 cut(s) | 301, 1400, 1673, 1674, 3116 |
| BssT1I | CCWWGG | 3 cut(s) | 301, 1400, 3116 |
| Bst2UI | CCWGG | 2 cut(s) | 2246, 2283 |
| Bst6I | CTCTTC | 5 cut(s) | 40, 534, 1100, 1626, 3050 |
| BstAUI | TGTACA | 1 cut(s) | 2117 |
| BstBAI | YACGTR | 2 cut(s) | 2465, 3287 |
| BstBI | TTCGAA | 2 cut(s) | 1960, 2909 |
| BstC8I | GCNNGC | 3 cut(s) | 1245, 1368, 1616 |
| BstDEI | CTNAG | 6 cut(s) | 80, 2092, 2108, 2180, 3066, 3447 |
| BstFNI | CGCG | 2 cut(s) | 2669, 2708 |
| BstH2I | RGCGCY | 1 cut(s) | 2760 |
| BstHHI | GCGC | 2 cut(s) | 2681, 2759 |
| BstMAI | GTCTC | 1 cut(s) | 2974 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1678, 3400 |
| BstNI | CCWGG | 2 cut(s) | 2246, 2283 |
| BstNSI | RCATGY | 2 cut(s) | 1618, 3417 |
| BstSCI | CCNGG | 4 cut(s) | 1672, 1673, 2244, 2281 |
| BstSFI | CTRYAG | 2 cut(s) | 1665, 2824 |
| BstSLI | GKGCMC | 1 cut(s) | 2402 |
| BstUI | CGCG | 2 cut(s) | 2669, 2708 |
| BstV1I | GCAGC | 9 cut(s) | 470, 485, 737, 1989, 2094, 2508, 2810, 3228, 3336 |
| BstV2I | GAAGAC | 3 cut(s) | 238, 701, 3501 |
| BstX2I | RGATCY | 8 cut(s) | 355, 2104, 2150, 2176, 2222, 2248, 2300, 2485 |
| BstYI | RGATCY | 8 cut(s) | 355, 2104, 2150, 2176, 2222, 2248, 2300, 2485 |
| Bsu15I | ATCGAT | 1 cut(s) | 2659 |
| BsuI | GTATCC | 1 cut(s) | 91 |
| BsuRI | GGCC | 4 cut(s) | 5, 337, 1906, 2868 |
| BsuTUI | ATCGAT | 1 cut(s) | 2659 |
| BtsI | GCAGTG | 1 cut(s) | 3304 |
| BtsIMutI | CAGTG | 5 cut(s) | 1316, 1458, 1916, 2400, 3304 |
| Cac8I | GCNNGC | 3 cut(s) | 1245, 1368, 1616 |
| CciI | TCATGA | 3 cut(s) | 865, 1063, 3547 |
| CfoI | GCGC | 2 cut(s) | 2681, 2759 |
| Cfr10I | RCCGGY | 1 cut(s) | 2868 |
| Cfr13I | GGNCC | 2 cut(s) | 943, 3262 |
| Cfr9I | CCCGGG | 1 cut(s) | 1673 |
| ClaI | ATCGAT | 1 cut(s) | 2659 |
| CseI | GACGC | 3 cut(s) | 2697, 3044, 3383 |
| CsiI | ACCWGGT | 1 cut(s) | 2281 |
| Csp6I | GTAC | 3 cut(s) | 656, 2118, 3284 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2800, 2835 |
| CviQI | GTAC | 3 cut(s) | 656, 2118, 3284 |
| DdeI | CTNAG | 6 cut(s) | 80, 2092, 2108, 2180, 3066, 3447 |
| DraI | TTTAAA | 2 cut(s) | 1387, 2127 |
| DraIII | CACNNNGTG | 1 cut(s) | 73 |
| EaeI | YGGCCR | 3 cut(s) | 3, 335, 2866 |
| Eam1104I | CTCTTC | 5 cut(s) | 40, 534, 1100, 1626, 3050 |
| EarI | CTCTTC | 5 cut(s) | 40, 534, 1100, 1626, 3050 |
| EciI | GGCGGA | 2 cut(s) | 660, 699 |
| Ecl136II | GAGCTC | 2 cut(s) | 175, 1093 |
| Eco130I | CCWWGG | 3 cut(s) | 301, 1400, 3116 |
| Eco24I | GRGCYC | 3 cut(s) | 177, 1095, 1674 |
| Eco32I | GATATC | 1 cut(s) | 2435 |
| Eco47I | GGWCC | 2 cut(s) | 943, 3262 |
| Eco53kI | GAGCTC | 2 cut(s) | 175, 1093 |
| Eco57I | CTGAAG | 1 cut(s) | 2601 |
| Eco88I | CYCGRG | 4 cut(s) | 499, 609, 1547, 1673 |
| EcoICRI | GAGCTC | 2 cut(s) | 175, 1093 |
| EcoRII | CCWGG | 2 cut(s) | 2244, 2281 |
| EcoRV | GATATC | 1 cut(s) | 2435 |
| EcoT14I | CCWWGG | 3 cut(s) | 301, 1400, 3116 |
| EcoT22I | ATGCAT | 4 cut(s) | 265, 1111, 1620, 2783 |
| EcoT38I | GRGCYC | 3 cut(s) | 177, 1095, 1674 |
| ErhI | CCWWGG | 3 cut(s) | 301, 1400, 3116 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1452, 1484 |
| FaqI | GGGAC | 2 cut(s) | 2588, 2695 |
| FauI | CCCGC | 1 cut(s) | 497 |
| FbaI | TGATCA | 1 cut(s) | 3232 |
| FblI | GTMKAC | 1 cut(s) | 1664 |
| FriOI | GRGCYC | 3 cut(s) | 177, 1095, 1674 |
| FspBI | CTAG | 8 cut(s) | 290, 602, 1070, 1401, 1955, 2057, 2079, 2102 |
| GlaI | GCGC | 2 cut(s) | 2680, 2758 |
| GsaI | CCCAGC | 1 cut(s) | 966 |
| GsuI | CTGGAG | 2 cut(s) | 2317, 2998 |
| HaeII | RGCGCY | 1 cut(s) | 2760 |
| HaeIII | GGCC | 4 cut(s) | 5, 337, 1906, 2868 |
| HapII | CCGG | 4 cut(s) | 1196, 1674, 2639, 2869 |
| HgaI | GACGC | 3 cut(s) | 2697, 3044, 3383 |
| HhaI | GCGC | 2 cut(s) | 2681, 2759 |
| Hin6I | GCGC | 2 cut(s) | 2679, 2757 |
| HinP1I | GCGC | 2 cut(s) | 2679, 2757 |
| HincII | GTYRAC | 4 cut(s) | 802, 925, 2293, 2797 |
| HindII | GTYRAC | 4 cut(s) | 802, 925, 2293, 2797 |
| HindIII | AAGCTT | 2 cut(s) | 2162, 2234 |
| HpaII | CCGG | 4 cut(s) | 1196, 1674, 2639, 2869 |
| HphI | GGTGA | 6 cut(s) | 404, 2129, 2201, 2297, 2656, 3523 |
| HpyCH4IV | ACGT | 7 cut(s) | 366, 1716, 1990, 2464, 3286, 3498, 3528 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1678, 3400 |
| HpyF3I | CTNAG | 6 cut(s) | 80, 2092, 2108, 2180, 3066, 3447 |
| HpySE526I | ACGT | 7 cut(s) | 366, 1716, 1990, 2464, 3286, 3498, 3528 |
| HspAI | GCGC | 2 cut(s) | 2679, 2757 |
| Ksp22I | TGATCA | 1 cut(s) | 3232 |
| LguI | GCTCTTC | 1 cut(s) | 1100 |
| LmnI | GCTCC | 3 cut(s) | 1678, 2635, 2929 |
| Lsp1109I | GCAGC | 9 cut(s) | 470, 485, 737, 1989, 2094, 2508, 2810, 3228, 3336 |
| MabI | ACCWGGT | 1 cut(s) | 2281 |
| MaeI | CTAG | 8 cut(s) | 290, 602, 1070, 1401, 1955, 2057, 2079, 2102 |
| MaeII | ACGT | 7 cut(s) | 366, 1716, 1990, 2464, 3286, 3498, 3528 |
| MaeIII | GTNAC | 7 cut(s) | 1073, 1153, 1276, 1532, 1893, 2460, 3529 |
| MfeI | CAATTG | 3 cut(s) | 11, 726, 2716 |
| MflI | RGATCY | 8 cut(s) | 355, 2104, 2150, 2176, 2222, 2248, 2300, 2485 |
| MhlI | GDGCHC | 4 cut(s) | 177, 1095, 1674, 2402 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 8 cut(s) | 599, 1670, 1804, 2570, 2976, 3048, 3429, 3434 |
| MmeI | TCCRAC | 8 cut(s) | 1475, 1608, 2128, 2200, 2436, 2615, 2853, 3315 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| Mph1103I | ATGCAT | 4 cut(s) | 265, 1111, 1620, 2783 |
| MroXI | GAANNNNTTC | 2 cut(s) | 291, 2586 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1216, 1339, 1704, 2386, 3276 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 1 cut(s) | 3129 |
| MspI | CCGG | 4 cut(s) | 1196, 1674, 2639, 2869 |
| MspR9I | CCNGG | 4 cut(s) | 1674, 1675, 2246, 2283 |
| MunI | CAATTG | 3 cut(s) | 11, 726, 2716 |
| Mva1269I | GAATGC | 5 cut(s) | 1109, 1182, 1305, 2723, 2783 |
| MvaI | CCWGG | 2 cut(s) | 2246, 2283 |
| MvnI | CGCG | 2 cut(s) | 2669, 2708 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1678, 3400 |
| NciI | CCSGG | 2 cut(s) | 1674, 1675 |
| NlaIV | GGNNCC | 5 cut(s) | 357, 2152, 2224, 2637, 3114 |
| NmuCI | GTSAC | 3 cut(s) | 1073, 1532, 3529 |
| NsiI | ATGCAT | 4 cut(s) | 265, 1111, 1620, 2783 |
| NspI | RCATGY | 2 cut(s) | 1618, 3417 |
| NspV | TTCGAA | 2 cut(s) | 1960, 2909 |
| PaeI | GCATGC | 1 cut(s) | 1618 |
| PagI | TCATGA | 3 cut(s) | 865, 1063, 3547 |
| PciI | ACATGT | 1 cut(s) | 3413 |
| PciSI | GCTCTTC | 1 cut(s) | 1100 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 249 |
| PctI | GAATGC | 5 cut(s) | 1109, 1182, 1305, 2723, 2783 |
| PdmI | GAANNNNTTC | 2 cut(s) | 291, 2586 |
| PflFI | GACNNNGTC | 1 cut(s) | 2985 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2864 |
| PfoI | TCCNGGA | 1 cut(s) | 2244 |
| PleI | GAGTC | 8 cut(s) | 599, 1669, 1803, 2570, 2976, 3048, 3428, 3434 |
| PpsI | GAGTC | 8 cut(s) | 599, 1669, 1803, 2570, 2976, 3048, 3428, 3434 |
| Ppu21I | YACGTR | 2 cut(s) | 2465, 3287 |
| PscI | ACATGT | 1 cut(s) | 3413 |
| PshBI | ATTAAT | 1 cut(s) | 2316 |
| PsiI | TTATAA | 2 cut(s) | 1838, 3561 |
| Psp124BI | GAGCTC | 2 cut(s) | 177, 1095 |
| Psp6I | CCWGG | 2 cut(s) | 2244, 2281 |
| PspFI | CCCAGC | 1 cut(s) | 962 |
| PspGI | CCWGG | 2 cut(s) | 2244, 2281 |
| PspN4I | GGNNCC | 5 cut(s) | 357, 2152, 2224, 2637, 3114 |
| PspPI | GGNCC | 2 cut(s) | 943, 3262 |
| PstI | CTGCAG | 1 cut(s) | 2828 |
| PsuI | RGATCY | 8 cut(s) | 355, 2104, 2150, 2176, 2222, 2248, 2300, 2485 |
| PsyI | GACNNNGTC | 1 cut(s) | 2985 |
| PvuII | CAGCTG | 1 cut(s) | 3129 |
| RsaI | GTAC | 3 cut(s) | 657, 2119, 3285 |
| RsaNI | GTAC | 3 cut(s) | 656, 2118, 3284 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1216, 1339, 1704, 2386, 3276 |
| SacI | GAGCTC | 2 cut(s) | 177, 1095 |
| SapI | GCTCTTC | 1 cut(s) | 1100 |
| Sau96I | GGNCC | 2 cut(s) | 943, 3262 |
| SchI | GAGTC | 8 cut(s) | 599, 1670, 1804, 2570, 2976, 3048, 3429, 3434 |
| ScrFI | CCNGG | 4 cut(s) | 1674, 1675, 2246, 2283 |
| SduI | GDGCHC | 4 cut(s) | 177, 1095, 1674, 2402 |
| SexAI | ACCWGGT | 1 cut(s) | 2281 |
| SfcI | CTRYAG | 2 cut(s) | 1665, 2824 |
| SfuI | TTCGAA | 2 cut(s) | 1960, 2909 |
| SinI | GGWCC | 2 cut(s) | 943, 3262 |
| SmaI | CCCGGG | 1 cut(s) | 1675 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1216, 1339, 1704, 2386, 3276 |
| SmlI | CTYRAG | 6 cut(s) | 1088, 1176, 1299, 1792, 2339, 2800 |
| SmoI | CTYRAG | 6 cut(s) | 1088, 1176, 1299, 1792, 2339, 2800 |
| SpeI | ACTAGT | 1 cut(s) | 289 |
| SphI | GCATGC | 1 cut(s) | 1618 |
| SsiI | CCGC | 8 cut(s) | 504, 549, 645, 684, 1537, 1891, 1981, 2667 |
| SspI | AATATT | 1 cut(s) | 814 |
| SspMI | CTAG | 8 cut(s) | 290, 602, 1070, 1401, 1955, 2057, 2079, 2102 |
| SstI | GAGCTC | 2 cut(s) | 177, 1095 |
| StyD4I | CCNGG | 4 cut(s) | 1672, 1673, 2244, 2281 |
| StyI | CCWWGG | 3 cut(s) | 301, 1400, 3116 |
| TaiI | ACGT | 7 cut(s) | 369, 1719, 1993, 2467, 3289, 3501, 3531 |
| TaqI | TCGA | 8 cut(s) | 824, 1569, 1960, 2553, 2659, 2909, 3052, 3418 |
| TatI | WGTACW | 1 cut(s) | 2117 |
| TauI | GCSGC | 1 cut(s) | 1983 |
| TscAI | CASTG | 5 cut(s) | 1323, 1458, 1923, 2407, 3311 |
| TseFI | GTSAC | 3 cut(s) | 1073, 1532, 3529 |
| TseI | GCWGC | 9 cut(s) | 458, 473, 750, 1977, 2082, 2496, 2823, 3241, 3349 |
| Tsp45I | GTSAC | 3 cut(s) | 1073, 1532, 3529 |
| TspGWI | ACGGA | 1 cut(s) | 3506 |
| TspMI | CCCGGG | 1 cut(s) | 1673 |
| TspRI | CASTG | 5 cut(s) | 1323, 1458, 1923, 2407, 3311 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2985 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2864 |
| VneI | GTGCAC | 1 cut(s) | 2398 |
| VpaK11BI | GGWCC | 2 cut(s) | 943, 3262 |
| VspI | ATTAAT | 1 cut(s) | 2316 |
| XbaI | TCTAGA | 1 cut(s) | 2101 |
| XceI | RCATGY | 2 cut(s) | 1618, 3417 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 740 |
| XmaI | CCCGGG | 1 cut(s) | 1673 |
| XmaJI | CCTAGG | 1 cut(s) | 1400 |
| XmiI | GTMKAC | 1 cut(s) | 1664 |
| XmnI | GAANNNNTTC | 2 cut(s) | 291, 2586 |
| XspI | CTAG | 8 cut(s) | 290, 602, 1070, 1401, 1955, 2057, 2079, 2102 |
| Zsp2I | ATGCAT | 4 cut(s) | 265, 1111, 1620, 2783 |