TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 74 - 143 | 5.1e-17 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 396 - 473 | 4e-15 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 469 - 570 | 4.9e-17 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 610 - 706 | 1.6e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2469 |
| Acc36I | ACCTGC | 1 cut(s) | 444 |
| Acc65I | GGTACC | 1 cut(s) | 569 |
| AccB1I | GGYRCC | 1 cut(s) | 569 |
| AccI | GTMKAC | 1 cut(s) | 22 |
| AccII | CGCG | 1 cut(s) | 1974 |
| AciI | CCGC | 1 cut(s) | 1649 |
| AclWI | GGATC | 5 cut(s) | 216, 1461, 1530, 1848, 2609 |
| AcsI | RAATTY | 7 cut(s) | 171, 850, 937, 1087, 1967, 2143, 2373 |
| AcuI | CTGAAG | 2 cut(s) | 2273, 2420 |
| AcvI | CACGTG | 1 cut(s) | 274 |
| AdeI | CACNNNGTG | 1 cut(s) | 217 |
| AfaI | GTAC | 2 cut(s) | 571, 2847 |
| AfeI | AGCGCT | 1 cut(s) | 1738 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1835, 1836, 1837, 1911, 2654 |
| AflII | CTTAAG | 1 cut(s) | 658 |
| AflIII | ACRYGT | 3 cut(s) | 271, 1479, 2585 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1900, 2191 |
| AjiI | CACGTC | 1 cut(s) | 1480 |
| AjnI | CCWGG | 6 cut(s) | 439, 1166, 1810, 2055, 2691, 2925 |
| AleI | CACNNNNGTG | 1 cut(s) | 2333 |
| Alw21I | GWGCWC | 2 cut(s) | 333, 1107 |
| Alw26I | GTCTC | 4 cut(s) | 1010, 1322, 1358, 2010 |
| Alw44I | GTGCAC | 1 cut(s) | 1103 |
| AlwI | GGATC | 5 cut(s) | 216, 1461, 1530, 1848, 2609 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2251 |
| Aor51HI | AGCGCT | 1 cut(s) | 1738 |
| AoxI | GGCC | 3 cut(s) | 76, 342, 674 |
| ApaLI | GTGCAC | 1 cut(s) | 1103 |
| ApeKI | GCWGC | 7 cut(s) | 165, 532, 535, 1669, 1672, 2801, 2829 |
| ApoI | RAATTY | 7 cut(s) | 171, 850, 937, 1087, 1967, 2143, 2373 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 228, 1764 |
| Asp718I | GGTACC | 1 cut(s) | 569 |
| AspA2I | CCTAGG | 3 cut(s) | 743, 1007, 2390 |
| AspLEI | GCGC | 2 cut(s) | 269, 1739 |
| AspS9I | GGNCC | 4 cut(s) | 343, 1132, 2345, 2686 |
| AsuC2I | CCSGG | 2 cut(s) | 2124, 2285 |
| AsuHPI | GGTGA | 7 cut(s) | 269, 420, 1726, 1954, 2330, 2735, 2852 |
| AsuNHI | GCTAGC | 1 cut(s) | 2762 |
| AvaII | GGWCC | 3 cut(s) | 1132, 2345, 2686 |
| AvrII | CCTAGG | 3 cut(s) | 743, 1007, 2390 |
| BaeGI | GKGCMC | 2 cut(s) | 688, 1107 |
| BanI | GGYRCC | 1 cut(s) | 569 |
| BauI | CACGAG | 2 cut(s) | 2559, 2736 |
| BbrPI | CACGTG | 1 cut(s) | 274 |
| BbsI | GAAGAC | 3 cut(s) | 1940, 2733, 2928 |
| Bbv12I | GWGCWC | 2 cut(s) | 333, 1107 |
| BbvI | GCAGC | 7 cut(s) | 177, 522, 544, 1656, 1684, 2813, 2841 |
| BciT130I | CCWGG | 6 cut(s) | 441, 1168, 1812, 2057, 2693, 2927 |
| BciVI | GTATCC | 2 cut(s) | 773, 2164 |
| BclI | TGATCA | 4 cut(s) | 1804, 2563, 2710, 2773 |
| BcnI | CCSGG | 2 cut(s) | 2124, 2285 |
| BcoDI | GTCTC | 4 cut(s) | 1010, 1322, 1358, 2010 |
| BfaI | CTAG | 9 cut(s) | 744, 813, 1008, 1136, 1688, 1835, 2391, 2612, 2763 |
| BfmI | CTRYAG | 3 cut(s) | 126, 1670, 2805 |
| BfoI | RGCGCY | 1 cut(s) | 1740 |
| BfrI | CTTAAG | 1 cut(s) | 658 |
| BfuAI | ACCTGC | 1 cut(s) | 444 |
| BfuI | GTATCC | 2 cut(s) | 773, 2164 |
| BisI | GCNGC | 8 cut(s) | 166, 533, 536, 1649, 1670, 1673, 2802, 2830 |
| BlnI | CCTAGG | 3 cut(s) | 743, 1007, 2390 |
| BlsI | GCNGC | 8 cut(s) | 167, 534, 537, 1650, 1671, 1674, 2803, 2831 |
| Bme1390I | CCNGG | 8 cut(s) | 441, 1168, 1812, 2057, 2124, 2285, 2693, 2927 |
| Bme18I | GGWCC | 3 cut(s) | 1132, 2345, 2686 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1900, 2191 |
| BmgBI | CACGTC | 1 cut(s) | 1480 |
| BmgT120I | GGNCC | 4 cut(s) | 343, 1132, 2345, 2686 |
| BmiI | GGNNCC | 5 cut(s) | 571, 1916, 2604, 2687, 2895 |
| BmrFI | CCNGG | 8 cut(s) | 441, 1168, 1812, 2057, 2124, 2285, 2693, 2927 |
| BmtI | GCTAGC | 1 cut(s) | 2766 |
| BpiI | GAAGAC | 3 cut(s) | 1940, 2733, 2928 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1198, 1230 |
| BpmI | CTGGAG | 2 cut(s) | 651, 944 |
| BpuEI | CTTGAG | 3 cut(s) | 57, 1034, 1103 |
| BpuMI | CCSGG | 2 cut(s) | 2124, 2285 |
| Bsa29I | ATCGAT | 1 cut(s) | 1307 |
| BsaAI | YACGTR | 1 cut(s) | 274 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2247, 2384 |
| BsaJI | CCNNGG | 6 cut(s) | 439, 743, 1007, 1464, 2055, 2390 |
| BsaWI | WCCGGW | 2 cut(s) | 2459, 2837 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 739, 769 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1835, 1836, 1837, 1911, 2654 |
| Bse118I | RCCGGY | 1 cut(s) | 2234 |
| Bse1I | ACTGG | 2 cut(s) | 1716, 2109 |
| Bse3DI | GCAATG | 5 cut(s) | 124, 237, 2529, 2764, 2961 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2247, 2384 |
| BseBI | CCWGG | 6 cut(s) | 441, 1168, 1812, 2057, 2693, 2927 |
| BseCI | ATCGAT | 1 cut(s) | 1307 |
| BseDI | CCNNGG | 6 cut(s) | 439, 743, 1007, 1464, 2055, 2390 |
| BseJI | GATNNNNATC | 2 cut(s) | 2247, 2384 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1835, 1836, 1837, 1911, 2654 |
| BseMI | GCAATG | 5 cut(s) | 124, 237, 2529, 2764, 2961 |
| BseNI | ACTGG | 2 cut(s) | 1716, 2109 |
| BseSI | GKGCMC | 2 cut(s) | 688, 1107 |
| BseXI | GCAGC | 7 cut(s) | 177, 522, 544, 1656, 1684, 2813, 2841 |
| BseYI | CCCAGC | 1 cut(s) | 1830 |
| BsgI | GTGCAG | 2 cut(s) | 1145, 1776 |
| Bsh1236I | CGCG | 1 cut(s) | 1974 |
| BshFI | GGCC | 3 cut(s) | 78, 344, 676 |
| BshNI | GGYRCC | 1 cut(s) | 569 |
| BshVI | ATCGAT | 1 cut(s) | 1307 |
| BsiHKAI | GWGCWC | 2 cut(s) | 333, 1107 |
| BsiSI | CCGG | 6 cut(s) | 1952, 2123, 2235, 2285, 2460, 2838 |
| BslFI | GGGAC | 1 cut(s) | 1013 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1835, 1836, 1837, 1911, 2654 |
| BsmAI | GTCTC | 4 cut(s) | 1010, 1322, 1358, 2010 |
| BsmFI | GGGAC | 1 cut(s) | 1013 |
| BsmI | GAATGC | 2 cut(s) | 10, 952 |
| BsnI | GGCC | 3 cut(s) | 78, 344, 676 |
| Bsp1286I | GDGCHC | 3 cut(s) | 333, 688, 1107 |
| Bsp68I | TCGCGA | 1 cut(s) | 1974 |
| BspACI | CCGC | 1 cut(s) | 1649 |
| BspANI | GGCC | 3 cut(s) | 78, 344, 676 |
| BspDI | ATCGAT | 1 cut(s) | 1307 |
| BspFNI | CGCG | 1 cut(s) | 1974 |
| BspHI | TCATGA | 3 cut(s) | 418, 466, 2860 |
| BspLI | GGNNCC | 5 cut(s) | 571, 1916, 2604, 2687, 2895 |
| BspMAI | CTGCAG | 1 cut(s) | 1674 |
| BspMI | ACCTGC | 1 cut(s) | 444 |
| BspOI | GCTAGC | 1 cut(s) | 2766 |
| BspPI | GGATC | 5 cut(s) | 216, 1461, 1530, 1848, 2609 |
| BspT107I | GGYRCC | 1 cut(s) | 569 |
| BspTI | CTTAAG | 1 cut(s) | 658 |
| BsrDI | GCAATG | 5 cut(s) | 124, 237, 2529, 2764, 2961 |
| BsrFI | RCCGGY | 1 cut(s) | 2234 |
| BsrI | ACTGG | 2 cut(s) | 1716, 2109 |
| BssAI | RCCGGY | 1 cut(s) | 2234 |
| BssECI | CCNNGG | 6 cut(s) | 439, 743, 1007, 1464, 2055, 2390 |
| BssSI | CACGAG | 2 cut(s) | 2559, 2736 |
| BssT1I | CCWWGG | 4 cut(s) | 743, 1007, 1464, 2390 |
| Bst2BI | CACGAG | 2 cut(s) | 2559, 2736 |
| Bst2UI | CCWGG | 6 cut(s) | 441, 1168, 1812, 2057, 2693, 2927 |
| Bst4CI | ACNGT | 8 cut(s) | 97, 482, 614, 683, 766, 1655, 1898, 2217 |
| Bst6I | CTCTTC | 1 cut(s) | 1770 |
| BstAFI | CTTAAG | 1 cut(s) | 658 |
| BstBAI | YACGTR | 1 cut(s) | 274 |
| BstC8I | GCNNGC | 6 cut(s) | 1440, 1735, 1957, 2232, 2236, 2764 |
| BstDEI | CTNAG | 3 cut(s) | 312, 596, 2239 |
| BstFNI | CGCG | 1 cut(s) | 1974 |
| BstH2I | RGCGCY | 1 cut(s) | 1740 |
| BstHHI | GCGC | 2 cut(s) | 269, 1739 |
| BstMAI | GTCTC | 4 cut(s) | 1010, 1322, 1358, 2010 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 2540, 2763, 2807 |
| BstNI | CCWGG | 6 cut(s) | 441, 1168, 1812, 2057, 2693, 2927 |
| BstNSI | RCATGY | 6 cut(s) | 246, 311, 589, 1959, 2234, 2589 |
| BstSCI | CCNGG | 8 cut(s) | 439, 1166, 1810, 2055, 2122, 2283, 2691, 2925 |
| BstSFI | CTRYAG | 3 cut(s) | 126, 1670, 2805 |
| BstSLI | GKGCMC | 2 cut(s) | 688, 1107 |
| BstUI | CGCG | 1 cut(s) | 1974 |
| BstV1I | GCAGC | 7 cut(s) | 177, 522, 544, 1656, 1684, 2813, 2841 |
| BstV2I | GAAGAC | 3 cut(s) | 1940, 2733, 2928 |
| BstX2I | RGATCY | 4 cut(s) | 1453, 1522, 1840, 2614 |
| BstYI | RGATCY | 4 cut(s) | 1453, 1522, 1840, 2614 |
| Bsu15I | ATCGAT | 1 cut(s) | 1307 |
| BsuI | GTATCC | 2 cut(s) | 773, 2164 |
| BsuRI | GGCC | 3 cut(s) | 78, 344, 676 |
| BsuTUI | ATCGAT | 1 cut(s) | 1307 |
| BtrI | CACGTC | 1 cut(s) | 1480 |
| BtuMI | TCGCGA | 1 cut(s) | 1974 |
| BveI | ACCTGC | 1 cut(s) | 444 |
| Cac8I | GCNNGC | 6 cut(s) | 1440, 1735, 1957, 2232, 2236, 2764 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2251 |
| CciI | TCATGA | 3 cut(s) | 418, 466, 2860 |
| CfoI | GCGC | 2 cut(s) | 269, 1739 |
| Cfr10I | RCCGGY | 1 cut(s) | 2234 |
| Cfr13I | GGNCC | 4 cut(s) | 343, 1132, 2345, 2686 |
| ClaI | ATCGAT | 1 cut(s) | 1307 |
| CseI | GACGC | 1 cut(s) | 630 |
| Csp6I | GTAC | 2 cut(s) | 570, 2846 |
| CviQI | GTAC | 2 cut(s) | 570, 2846 |
| DdeI | CTNAG | 3 cut(s) | 312, 596, 2239 |
| DraI | TTTAAA | 3 cut(s) | 13, 186, 253 |
| DraIII | CACNNNGTG | 1 cut(s) | 217 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1900, 2191 |
| Eam1104I | CTCTTC | 1 cut(s) | 1770 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1900, 2191 |
| EarI | CTCTTC | 1 cut(s) | 1770 |
| Eco130I | CCWWGG | 4 cut(s) | 743, 1007, 1464, 2390 |
| Eco147I | AGGCCT | 1 cut(s) | 78 |
| Eco32I | GATATC | 1 cut(s) | 1685 |
| Eco47I | GGWCC | 3 cut(s) | 1132, 2345, 2686 |
| Eco47III | AGCGCT | 1 cut(s) | 1738 |
| Eco57I | CTGAAG | 2 cut(s) | 2273, 2420 |
| Eco72I | CACGTG | 1 cut(s) | 274 |
| EcoO109I | RGGNCCY | 1 cut(s) | 343 |
| EcoRII | CCWGG | 6 cut(s) | 439, 1166, 1810, 2055, 2691, 2925 |
| EcoRV | GATATC | 1 cut(s) | 1685 |
| EcoT14I | CCWWGG | 4 cut(s) | 743, 1007, 1464, 2390 |
| EcoT22I | ATGCAT | 2 cut(s) | 384, 1961 |
| ErhI | CCWWGG | 4 cut(s) | 743, 1007, 1464, 2390 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 216, 248 |
| FaqI | GGGAC | 1 cut(s) | 1013 |
| FbaI | TGATCA | 4 cut(s) | 1804, 2563, 2710, 2773 |
| FblI | GTMKAC | 1 cut(s) | 22 |
| Fnu4HI | GCNGC | 8 cut(s) | 166, 533, 536, 1649, 1670, 1673, 2802, 2830 |
| Fsp4HI | GCNGC | 8 cut(s) | 166, 533, 536, 1649, 1670, 1673, 2802, 2830 |
| FspBI | CTAG | 9 cut(s) | 744, 813, 1008, 1136, 1688, 1835, 2391, 2612, 2763 |
| GlaI | GCGC | 2 cut(s) | 268, 1738 |
| GluI | GCNGC | 8 cut(s) | 166, 533, 536, 1649, 1670, 1673, 2802, 2830 |
| GsaI | CCCAGC | 1 cut(s) | 1834 |
| GsuI | CTGGAG | 2 cut(s) | 651, 944 |
| HaeII | RGCGCY | 1 cut(s) | 1740 |
| HaeIII | GGCC | 3 cut(s) | 78, 344, 676 |
| HapII | CCGG | 6 cut(s) | 1952, 2123, 2235, 2285, 2460, 2838 |
| HgaI | GACGC | 1 cut(s) | 630 |
| HhaI | GCGC | 2 cut(s) | 269, 1739 |
| Hin6I | GCGC | 2 cut(s) | 267, 1737 |
| HinP1I | GCGC | 2 cut(s) | 267, 1737 |
| HincII | GTYRAC | 1 cut(s) | 23 |
| HindII | GTYRAC | 1 cut(s) | 23 |
| HindIII | AAGCTT | 2 cut(s) | 225, 291 |
| HpaII | CCGG | 6 cut(s) | 1952, 2123, 2235, 2285, 2460, 2838 |
| HphI | GGTGA | 7 cut(s) | 269, 420, 1726, 1954, 2330, 2735, 2852 |
| Hpy166II | GTNNAC | 7 cut(s) | 23, 478, 1105, 1660, 2326, 2689, 2848 |
| Hpy8I | GTNNAC | 7 cut(s) | 23, 478, 1105, 1660, 2326, 2689, 2848 |
| Hpy99I | CGWCG | 1 cut(s) | 2855 |
| HpyCH4III | ACNGT | 8 cut(s) | 97, 482, 614, 683, 766, 1655, 1898, 2217 |
| HpyCH4IV | ACGT | 3 cut(s) | 55, 273, 1479 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 2540, 2763, 2807 |
| HpyF3I | CTNAG | 3 cut(s) | 312, 596, 2239 |
| HpySE526I | ACGT | 3 cut(s) | 55, 273, 1479 |
| HspAI | GCGC | 2 cut(s) | 267, 1737 |
| KpnI | GGTACC | 1 cut(s) | 573 |
| KroI | GCCGGC | 1 cut(s) | 2234 |
| KroNI | GCCGGC | 1 cut(s) | 2236 |
| Ksp22I | TGATCA | 4 cut(s) | 1804, 2563, 2710, 2773 |
| LmnI | GCTCC | 3 cut(s) | 1270, 1914, 2602 |
| Lsp1109I | GCAGC | 7 cut(s) | 177, 522, 544, 1656, 1684, 2813, 2841 |
| MaeI | CTAG | 9 cut(s) | 744, 813, 1008, 1136, 1688, 1835, 2391, 2612, 2763 |
| MaeII | ACGT | 3 cut(s) | 55, 273, 1479 |
| MaeIII | GTNAC | 4 cut(s) | 194, 426, 1714, 2958 |
| MfeI | CAATTG | 5 cut(s) | 1127, 1377, 1446, 1515, 1584 |
| MflI | RGATCY | 4 cut(s) | 1453, 1522, 1840, 2614 |
| MhlI | GDGCHC | 3 cut(s) | 333, 688, 1107 |
| MlyI | GAGTC | 3 cut(s) | 763, 1124, 2558 |
| MmeI | TCCRAC | 6 cut(s) | 606, 1019, 1049, 1929, 2055, 2930 |
| Mph1103I | ATGCAT | 2 cut(s) | 384, 1961 |
| MroNI | GCCGGC | 1 cut(s) | 2234 |
| MroXI | GAANNNNTTC | 2 cut(s) | 228, 1764 |
| MslI | CAYNNNNRTG | 7 cut(s) | 377, 471, 527, 2186, 2333, 2571, 2862 |
| MspA1I | CMGCKG | 3 cut(s) | 535, 2224, 2804 |
| MspCI | CTTAAG | 1 cut(s) | 658 |
| MspI | CCGG | 6 cut(s) | 1952, 2123, 2235, 2285, 2460, 2838 |
| MspR9I | CCNGG | 8 cut(s) | 441, 1168, 1812, 2057, 2124, 2285, 2693, 2927 |
| MunI | CAATTG | 5 cut(s) | 1127, 1377, 1446, 1515, 1584 |
| Mva1269I | GAATGC | 2 cut(s) | 10, 952 |
| MvaI | CCWGG | 6 cut(s) | 441, 1168, 1812, 2057, 2693, 2927 |
| MvnI | CGCG | 1 cut(s) | 1974 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 2540, 2763, 2807 |
| NaeI | GCCGGC | 1 cut(s) | 2236 |
| NciI | CCSGG | 2 cut(s) | 2124, 2285 |
| NgoMIV | GCCGGC | 1 cut(s) | 2234 |
| NheI | GCTAGC | 1 cut(s) | 2762 |
| NlaIV | GGNNCC | 5 cut(s) | 571, 1916, 2604, 2687, 2895 |
| NmuCI | GTSAC | 2 cut(s) | 426, 1714 |
| NruI | TCGCGA | 1 cut(s) | 1974 |
| NsiI | ATGCAT | 2 cut(s) | 384, 1961 |
| NspI | RCATGY | 6 cut(s) | 246, 311, 589, 1959, 2234, 2589 |
| OliI | CACNNNNGTG | 1 cut(s) | 2333 |
| PaeI | GCATGC | 2 cut(s) | 1959, 2234 |
| PagI | TCATGA | 3 cut(s) | 418, 466, 2860 |
| PceI | AGGCCT | 1 cut(s) | 78 |
| PciI | ACATGT | 1 cut(s) | 2585 |
| PctI | GAATGC | 2 cut(s) | 10, 952 |
| PdiI | GCCGGC | 1 cut(s) | 2236 |
| PdmI | GAANNNNTTC | 2 cut(s) | 228, 1764 |
| PfoI | TCCNGGA | 3 cut(s) | 1166, 2122, 2283 |
| PkrI | GCNGC | 8 cut(s) | 167, 534, 537, 1650, 1671, 1674, 2803, 2831 |
| PleI | GAGTC | 3 cut(s) | 762, 1123, 2557 |
| PmaCI | CACGTG | 1 cut(s) | 274 |
| PmlI | CACGTG | 1 cut(s) | 274 |
| PpsI | GAGTC | 3 cut(s) | 762, 1123, 2557 |
| Ppu21I | YACGTR | 1 cut(s) | 274 |
| PscI | ACATGT | 1 cut(s) | 2585 |
| PsiI | TTATAA | 1 cut(s) | 2469 |
| Psp6I | CCWGG | 6 cut(s) | 439, 1166, 1810, 2055, 2691, 2925 |
| PspCI | CACGTG | 1 cut(s) | 274 |
| PspFI | CCCAGC | 1 cut(s) | 1830 |
| PspGI | CCWGG | 6 cut(s) | 439, 1166, 1810, 2055, 2691, 2925 |
| PspN4I | GGNNCC | 5 cut(s) | 571, 1916, 2604, 2687, 2895 |
| PspPI | GGNCC | 4 cut(s) | 343, 1132, 2345, 2686 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 45, 77 |
| PstI | CTGCAG | 1 cut(s) | 1674 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2251 |
| PsuI | RGATCY | 4 cut(s) | 1453, 1522, 1840, 2614 |
| PvuII | CAGCTG | 3 cut(s) | 535, 2224, 2804 |
| RruI | TCGCGA | 1 cut(s) | 1974 |
| RsaI | GTAC | 2 cut(s) | 571, 2847 |
| RsaNI | GTAC | 2 cut(s) | 570, 2846 |
| RseI | CAYNNNNRTG | 7 cut(s) | 377, 471, 527, 2186, 2333, 2571, 2862 |
| SalI | GTCGAC | 1 cut(s) | 21 |
| SatI | GCNGC | 8 cut(s) | 166, 533, 536, 1649, 1670, 1673, 2802, 2830 |
| Sau96I | GGNCC | 4 cut(s) | 343, 1132, 2345, 2686 |
| SchI | GAGTC | 3 cut(s) | 763, 1124, 2558 |
| ScrFI | CCNGG | 8 cut(s) | 441, 1168, 1812, 2057, 2124, 2285, 2693, 2927 |
| SduI | GDGCHC | 3 cut(s) | 333, 688, 1107 |
| SfcI | CTRYAG | 3 cut(s) | 126, 1670, 2805 |
| SinI | GGWCC | 3 cut(s) | 1132, 2345, 2686 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 377, 471, 527, 2186, 2333, 2571, 2862 |
| SmlI | CTYRAG | 4 cut(s) | 72, 658, 1013, 1082 |
| SmoI | CTYRAG | 4 cut(s) | 72, 658, 1013, 1082 |
| SphI | GCATGC | 2 cut(s) | 1959, 2234 |
| SseBI | AGGCCT | 1 cut(s) | 78 |
| SsiI | CCGC | 1 cut(s) | 1649 |
| SspI | AATATT | 2 cut(s) | 285, 499 |
| SspMI | CTAG | 9 cut(s) | 744, 813, 1008, 1136, 1688, 1835, 2391, 2612, 2763 |
| StuI | AGGCCT | 1 cut(s) | 78 |
| StyD4I | CCNGG | 8 cut(s) | 439, 1166, 1810, 2055, 2122, 2283, 2691, 2925 |
| StyI | CCWWGG | 4 cut(s) | 743, 1007, 1464, 2390 |
| TaaI | ACNGT | 8 cut(s) | 97, 482, 614, 683, 766, 1655, 1898, 2217 |
| TaiI | ACGT | 3 cut(s) | 58, 276, 1482 |
| TaqI | TCGA | 7 cut(s) | 22, 972, 1307, 1359, 1497, 2014, 2195 |
| TaqII | GACCGA | 1 cut(s) | 1346 |
| TatI | WGTACW | 1 cut(s) | 2845 |
| TauI | GCSGC | 1 cut(s) | 1651 |
| TseFI | GTSAC | 2 cut(s) | 426, 1714 |
| TseI | GCWGC | 7 cut(s) | 165, 532, 535, 1669, 1672, 2801, 2829 |
| Tsp45I | GTSAC | 2 cut(s) | 426, 1714 |
| TspGWI | ACGGA | 6 cut(s) | 72, 216, 1043, 1208, 1677, 1927 |
| Vha464I | CTTAAG | 1 cut(s) | 658 |
| VneI | GTGCAC | 1 cut(s) | 1103 |
| VpaK11BI | GGWCC | 3 cut(s) | 1132, 2345, 2686 |
| XapI | RAATTY | 7 cut(s) | 171, 850, 937, 1087, 1967, 2143, 2373 |
| XbaI | TCTAGA | 2 cut(s) | 1687, 2611 |
| XceI | RCATGY | 6 cut(s) | 246, 311, 589, 1959, 2234, 2589 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1126 |
| XmaJI | CCTAGG | 3 cut(s) | 743, 1007, 2390 |
| XmiI | GTMKAC | 1 cut(s) | 22 |
| XmnI | GAANNNNTTC | 2 cut(s) | 228, 1764 |
| XspI | CTAG | 9 cut(s) | 744, 813, 1008, 1136, 1688, 1835, 2391, 2612, 2763 |
| Zsp2I | ATGCAT | 2 cut(s) | 384, 1961 |