TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 19 - 188 | 3.5e-51 | TIR domain |
| TIR_2 | PF13676 | 22 - 117 | 4e-16 | TIR domain |
| WHD_ROQ1 | PF23282 | 271 - 339 | 1.4e-14 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 527 - 628 | 4.1e-10 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 595 - 677 | 2.8e-15 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 664 - 747 | 7.7e-14 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 700 - 887 | 7.3e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 907 |
| AccB1I | GGYRCC | 2 cut(s) | 2244, 3450 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 562, 1715 |
| AccBSI | CCGCTC | 1 cut(s) | 2280 |
| AccI | GTMKAC | 1 cut(s) | 3327 |
| AccII | CGCG | 3 cut(s) | 891, 2093, 2517 |
| AccIII | TCCGGA | 2 cut(s) | 435, 1217 |
| AciI | CCGC | 5 cut(s) | 94, 464, 632, 891, 2280 |
| AclWI | GGATC | 6 cut(s) | 283, 341, 1470, 2345, 3096, 3111 |
| AcoI | YGGCCR | 1 cut(s) | 326 |
| AcsI | RAATTY | 6 cut(s) | 410, 469, 1480, 1631, 2510, 2856 |
| AcuI | CTGAAG | 2 cut(s) | 1149, 2903 |
| AfaI | GTAC | 1 cut(s) | 636 |
| AfeI | AGCGCT | 1 cut(s) | 195 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 264, 430, 562, 623, 1715, 2254, 2379, 3143 |
| AflIII | ACRYGT | 3 cut(s) | 1138, 2091, 3071 |
| AjnI | CCWGG | 4 cut(s) | 1027, 2353, 2598, 3180 |
| AleI | CACNNNNGTG | 1 cut(s) | 2819 |
| Alw21I | GWGCWC | 3 cut(s) | 168, 924, 1650 |
| Alw26I | GTCTC | 7 cut(s) | 1429, 1528, 1553, 1865, 2419, 2495, 2553 |
| Alw44I | GTGCAC | 1 cut(s) | 1646 |
| AlwI | GGATC | 6 cut(s) | 283, 341, 1470, 2345, 3096, 3111 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2417 |
| Ama87I | CYCGRG | 1 cut(s) | 581 |
| Aor13HI | TCCGGA | 2 cut(s) | 435, 1217 |
| Aor51HI | AGCGCT | 1 cut(s) | 195 |
| AoxI | GGCC | 5 cut(s) | 109, 326, 482, 933, 1262 |
| ApaLI | GTGCAC | 1 cut(s) | 1646 |
| ApeKI | GCWGC | 6 cut(s) | 449, 734, 1120, 1123, 3281, 3428 |
| ApoI | RAATTY | 6 cut(s) | 410, 469, 1480, 1631, 2510, 2856 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2397, 2429 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 819, 2307 |
| AspA2I | CCTAGG | 1 cut(s) | 2873 |
| AspLEI | GCGC | 1 cut(s) | 196 |
| AspS9I | GGNCC | 4 cut(s) | 433, 614, 934, 3175 |
| AsuC2I | CCSGG | 4 cut(s) | 425, 2667, 2771, 3319 |
| AsuHPI | GGTGA | 6 cut(s) | 95, 860, 2269, 2287, 2816, 3224 |
| AsuNHI | GCTAGC | 1 cut(s) | 374 |
| AvaI | CYCGRG | 1 cut(s) | 581 |
| AvaII | GGWCC | 3 cut(s) | 433, 614, 3175 |
| AvrII | CCTAGG | 1 cut(s) | 2873 |
| AxyI | CCTNAGG | 1 cut(s) | 3139 |
| BaeGI | GKGCMC | 2 cut(s) | 1650, 2249 |
| BanI | GGYRCC | 2 cut(s) | 2244, 3450 |
| BanII | GRGCYC | 1 cut(s) | 168 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 723, 755 |
| BauI | CACGAG | 1 cut(s) | 3225 |
| BbsI | GAAGAC | 3 cut(s) | 662, 3222, 3402 |
| Bbv12I | GWGCWC | 3 cut(s) | 168, 924, 1650 |
| BbvI | GCAGC | 6 cut(s) | 461, 721, 1110, 1132, 3293, 3440 |
| BccI | CCATC | 9 cut(s) | 120, 358, 617, 785, 1297, 1648, 2059, 2534, 3338 |
| BceAI | ACGGC | 1 cut(s) | 30 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1319, 1353 |
| BciT130I | CCWGG | 4 cut(s) | 1029, 2355, 2600, 3182 |
| BclI | TGATCA | 3 cut(s) | 3049, 3253, 3334 |
| BcnI | CCSGG | 4 cut(s) | 425, 2667, 2771, 3319 |
| BcoDI | GTCTC | 7 cut(s) | 1429, 1528, 1553, 1865, 2419, 2495, 2553 |
| BfaI | CTAG | 8 cut(s) | 375, 878, 980, 1514, 1551, 2231, 2874, 3092 |
| BfmI | CTRYAG | 1 cut(s) | 3285 |
| BfoI | RGCGCY | 1 cut(s) | 197 |
| BfuAI | ACCTGC | 1 cut(s) | 907 |
| BisI | GCNGC | 8 cut(s) | 450, 465, 735, 892, 1121, 1124, 3282, 3429 |
| BlnI | CCTAGG | 1 cut(s) | 2873 |
| BlsI | GCNGC | 8 cut(s) | 451, 466, 736, 893, 1122, 1125, 3283, 3430 |
| Bme1390I | CCNGG | 8 cut(s) | 425, 1029, 2355, 2600, 2667, 2771, 3182, 3319 |
| Bme18I | GGWCC | 3 cut(s) | 433, 614, 3175 |
| BmeT110I | CYCGRG | 1 cut(s) | 581 |
| BmgT120I | GGNCC | 4 cut(s) | 433, 614, 934, 3175 |
| BmiI | GGNNCC | 5 cut(s) | 2246, 2476, 3176, 3369, 3452 |
| BmrFI | CCNGG | 8 cut(s) | 425, 1029, 2355, 2600, 2667, 2771, 3182, 3319 |
| BmtI | GCTAGC | 1 cut(s) | 378 |
| BpiI | GAAGAC | 3 cut(s) | 662, 3222, 3402 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 488, 520, 759, 791 |
| BpmI | CTGGAG | 1 cut(s) | 1577 |
| BpuEI | CTTGAG | 3 cut(s) | 648, 1267, 1646 |
| BpuMI | CCSGG | 4 cut(s) | 425, 2667, 2771, 3319 |
| Bsa29I | ATCGAT | 1 cut(s) | 1589 |
| BsaBI | GATNNNNATC | 4 cut(s) | 227, 2050, 2867, 3336 |
| BsaJI | CCNNGG | 9 cut(s) | 50, 1027, 1709, 1731, 1869, 2076, 2873, 3318, 3454 |
| BsaWI | WCCGGW | 2 cut(s) | 435, 1217 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 264, 430, 562, 623, 1715, 2254, 2379, 3143 |
| Bse118I | RCCGGY | 1 cut(s) | 2720 |
| Bse1I | ACTGG | 6 cut(s) | 329, 513, 2259, 2295, 2478, 2652 |
| Bse21I | CCTNAGG | 1 cut(s) | 3139 |
| Bse3DI | GCAATG | 3 cut(s) | 499, 828, 3438 |
| Bse8I | GATNNNNATC | 4 cut(s) | 227, 2050, 2867, 3336 |
| BseAI | TCCGGA | 2 cut(s) | 435, 1217 |
| BseBI | CCWGG | 4 cut(s) | 1029, 2355, 2600, 3182 |
| BseCI | ATCGAT | 1 cut(s) | 1589 |
| BseDI | CCNNGG | 9 cut(s) | 50, 1027, 1709, 1731, 1869, 2076, 2873, 3318, 3454 |
| BseJI | GATNNNNATC | 4 cut(s) | 227, 2050, 2867, 3336 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 264, 430, 562, 623, 1715, 2254, 2379, 3143 |
| BseMI | GCAATG | 3 cut(s) | 499, 828, 3438 |
| BseMII | CTCAG | 3 cut(s) | 181, 519, 3153 |
| BseNI | ACTGG | 6 cut(s) | 329, 513, 2259, 2295, 2478, 2652 |
| BseRI | GAGGAG | 1 cut(s) | 189 |
| BseSI | GKGCMC | 2 cut(s) | 1650, 2249 |
| BseXI | GCAGC | 6 cut(s) | 461, 721, 1110, 1132, 3293, 3440 |
| BseYI | CCCAGC | 2 cut(s) | 2373, 2494 |
| BsgI | GTGCAG | 4 cut(s) | 139, 1139, 1688, 2319 |
| Bsh1236I | CGCG | 3 cut(s) | 891, 2093, 2517 |
| BshFI | GGCC | 5 cut(s) | 111, 328, 484, 935, 1264 |
| BshNI | GGYRCC | 2 cut(s) | 2244, 3450 |
| BshVI | ATCGAT | 1 cut(s) | 1589 |
| BsiHKAI | GWGCWC | 3 cut(s) | 168, 924, 1650 |
| BsiHKCI | CYCGRG | 1 cut(s) | 581 |
| BsiSI | CCGG | 8 cut(s) | 425, 436, 1019, 1218, 2666, 2721, 2771, 3318 |
| BslFI | GGGAC | 3 cut(s) | 1427, 1768, 2682 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 264, 430, 562, 623, 1715, 2254, 2379, 3143 |
| BsmAI | GTCTC | 7 cut(s) | 1429, 1528, 1553, 1865, 2419, 2495, 2553 |
| BsmFI | GGGAC | 3 cut(s) | 1427, 1768, 2682 |
| BsmI | GAATGC | 2 cut(s) | 410, 1495 |
| BsnI | GGCC | 5 cut(s) | 111, 328, 484, 935, 1264 |
| BsoBI | CYCGRG | 1 cut(s) | 581 |
| Bsp1286I | GDGCHC | 4 cut(s) | 168, 924, 1650, 2249 |
| Bsp13I | TCCGGA | 2 cut(s) | 435, 1217 |
| Bsp19I | CCATGG | 2 cut(s) | 50, 1709 |
| Bsp68I | TCGCGA | 1 cut(s) | 2517 |
| BspACI | CCGC | 5 cut(s) | 94, 464, 632, 891, 2280 |
| BspANI | GGCC | 5 cut(s) | 111, 328, 484, 935, 1264 |
| BspCNI | CTCAG | 3 cut(s) | 180, 518, 3152 |
| BspDI | ATCGAT | 1 cut(s) | 1589 |
| BspEI | TCCGGA | 2 cut(s) | 435, 1217 |
| BspFNI | CGCG | 3 cut(s) | 891, 2093, 2517 |
| BspHI | TCATGA | 6 cut(s) | 523, 571, 1054, 2995, 3046, 3340 |
| BspLI | GGNNCC | 5 cut(s) | 2246, 2476, 3176, 3369, 3452 |
| BspMI | ACCTGC | 1 cut(s) | 907 |
| BspOI | GCTAGC | 1 cut(s) | 378 |
| BspPI | GGATC | 6 cut(s) | 283, 341, 1470, 2345, 3096, 3111 |
| BspT107I | GGYRCC | 2 cut(s) | 2244, 3450 |
| BsrBI | CCGCTC | 1 cut(s) | 2280 |
| BsrDI | GCAATG | 3 cut(s) | 499, 828, 3438 |
| BsrFI | RCCGGY | 1 cut(s) | 2720 |
| BsrI | ACTGG | 6 cut(s) | 329, 513, 2259, 2295, 2478, 2652 |
| BssAI | RCCGGY | 1 cut(s) | 2720 |
| BssECI | CCNNGG | 9 cut(s) | 50, 1027, 1709, 1731, 1869, 2076, 2873, 3318, 3454 |
| BssSI | CACGAG | 1 cut(s) | 3225 |
| BssT1I | CCWWGG | 7 cut(s) | 50, 1709, 1731, 1869, 2076, 2873, 3454 |
| Bst2BI | CACGAG | 1 cut(s) | 3225 |
| Bst2UI | CCWGG | 4 cut(s) | 1029, 2355, 2600, 3182 |
| Bst6I | CTCTTC | 4 cut(s) | 166, 207, 531, 2313 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 976 |
| BstC8I | GCNNGC | 4 cut(s) | 376, 2500, 2718, 2722 |
| BstDEI | CTNAG | 8 cut(s) | 167, 505, 903, 1184, 1397, 1450, 2725, 3139 |
| BstDSI | CCRYGG | 2 cut(s) | 50, 1709 |
| BstFNI | CGCG | 3 cut(s) | 891, 2093, 2517 |
| BstH2I | RGCGCY | 1 cut(s) | 197 |
| BstHHI | GCGC | 1 cut(s) | 196 |
| BstMAI | GTCTC | 7 cut(s) | 1429, 1528, 1553, 1865, 2419, 2495, 2553 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 117, 976, 2514, 3269, 3278, 3287, 3437 |
| BstNI | CCWGG | 4 cut(s) | 1029, 2355, 2600, 3182 |
| BstNSI | RCATGY | 6 cut(s) | 837, 1142, 2502, 2720, 2738, 3075 |
| BstSCI | CCNGG | 8 cut(s) | 423, 1027, 2353, 2598, 2665, 2769, 3180, 3317 |
| BstSFI | CTRYAG | 1 cut(s) | 3285 |
| BstSLI | GKGCMC | 2 cut(s) | 1650, 2249 |
| BstUI | CGCG | 3 cut(s) | 891, 2093, 2517 |
| BstV1I | GCAGC | 6 cut(s) | 461, 721, 1110, 1132, 3293, 3440 |
| BstV2I | GAAGAC | 3 cut(s) | 662, 3222, 3402 |
| BstX2I | RGATCY | 3 cut(s) | 288, 1462, 3088 |
| BstYI | RGATCY | 3 cut(s) | 288, 1462, 3088 |
| Bsu15I | ATCGAT | 1 cut(s) | 1589 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3139 |
| BsuRI | GGCC | 5 cut(s) | 111, 328, 484, 935, 1264 |
| BsuTUI | ATCGAT | 1 cut(s) | 1589 |
| BtgI | CCRYGG | 2 cut(s) | 50, 1709 |
| BtsI | GCAGTG | 1 cut(s) | 21 |
| BtsIMutI | CAGTG | 4 cut(s) | 21, 520, 2203, 2302 |
| BtuMI | TCGCGA | 1 cut(s) | 2517 |
| BveI | ACCTGC | 1 cut(s) | 907 |
| Cac8I | GCNNGC | 4 cut(s) | 376, 2500, 2718, 2722 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2417 |
| CciI | TCATGA | 6 cut(s) | 523, 571, 1054, 2995, 3046, 3340 |
| CfoI | GCGC | 1 cut(s) | 196 |
| Cfr10I | RCCGGY | 1 cut(s) | 2720 |
| Cfr13I | GGNCC | 4 cut(s) | 433, 614, 934, 3175 |
| ClaI | ATCGAT | 1 cut(s) | 1589 |
| CseI | GACGC | 6 cut(s) | 119, 1218, 1944, 2082, 2099, 2467 |
| Csp6I | GTAC | 1 cut(s) | 635 |
| CviQI | GTAC | 1 cut(s) | 635 |
| DdeI | CTNAG | 8 cut(s) | 167, 505, 903, 1184, 1397, 1450, 2725, 3139 |
| DraI | TTTAAA | 1 cut(s) | 607 |
| EaeI | YGGCCR | 1 cut(s) | 326 |
| Eam1104I | CTCTTC | 4 cut(s) | 166, 207, 531, 2313 |
| EarI | CTCTTC | 4 cut(s) | 166, 207, 531, 2313 |
| Ecl136II | GAGCTC | 1 cut(s) | 166 |
| Eco130I | CCWWGG | 7 cut(s) | 50, 1709, 1731, 1869, 2076, 2873, 3454 |
| Eco24I | GRGCYC | 1 cut(s) | 168 |
| Eco47I | GGWCC | 3 cut(s) | 433, 614, 3175 |
| Eco47III | AGCGCT | 1 cut(s) | 195 |
| Eco53kI | GAGCTC | 1 cut(s) | 166 |
| Eco57I | CTGAAG | 2 cut(s) | 1149, 2903 |
| Eco81I | CCTNAGG | 1 cut(s) | 3139 |
| Eco88I | CYCGRG | 1 cut(s) | 581 |
| EcoICRI | GAGCTC | 1 cut(s) | 166 |
| EcoO109I | RGGNCCY | 1 cut(s) | 934 |
| EcoRII | CCWGG | 4 cut(s) | 1027, 2353, 2598, 3180 |
| EcoT14I | CCWWGG | 7 cut(s) | 50, 1709, 1731, 1869, 2076, 2873, 3454 |
| EcoT22I | ATGCAT | 4 cut(s) | 256, 972, 1888, 2504 |
| EcoT38I | GRGCYC | 1 cut(s) | 168 |
| ErhI | CCWWGG | 7 cut(s) | 50, 1709, 1731, 1869, 2076, 2873, 3454 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 254, 286 |
| FaqI | GGGAC | 3 cut(s) | 1427, 1768, 2682 |
| FauI | CCCGC | 1 cut(s) | 101 |
| FauNDI | CATATG | 1 cut(s) | 310 |
| FbaI | TGATCA | 3 cut(s) | 3049, 3253, 3334 |
| FblI | GTMKAC | 1 cut(s) | 3327 |
| Fnu4HI | GCNGC | 8 cut(s) | 450, 465, 735, 892, 1121, 1124, 3282, 3429 |
| FriOI | GRGCYC | 1 cut(s) | 168 |
| Fsp4HI | GCNGC | 8 cut(s) | 450, 465, 735, 892, 1121, 1124, 3282, 3429 |
| FspBI | CTAG | 8 cut(s) | 375, 878, 980, 1514, 1551, 2231, 2874, 3092 |
| GlaI | GCGC | 1 cut(s) | 195 |
| GluI | GCNGC | 8 cut(s) | 450, 465, 735, 892, 1121, 1124, 3282, 3429 |
| GsaI | CCCAGC | 2 cut(s) | 2377, 2498 |
| GsuI | CTGGAG | 1 cut(s) | 1577 |
| HaeII | RGCGCY | 1 cut(s) | 197 |
| HaeIII | GGCC | 5 cut(s) | 111, 328, 484, 935, 1264 |
| HapII | CCGG | 8 cut(s) | 425, 436, 1019, 1218, 2666, 2721, 2771, 3318 |
| HgaI | GACGC | 6 cut(s) | 119, 1218, 1944, 2082, 2099, 2467 |
| HhaI | GCGC | 1 cut(s) | 196 |
| Hin6I | GCGC | 1 cut(s) | 194 |
| HinP1I | GCGC | 1 cut(s) | 194 |
| HindIII | AAGCTT | 1 cut(s) | 882 |
| HpaII | CCGG | 8 cut(s) | 425, 436, 1019, 1218, 2666, 2721, 2771, 3318 |
| HphI | GGTGA | 6 cut(s) | 95, 860, 2269, 2287, 2816, 3224 |
| Hpy166II | GTNNAC | 7 cut(s) | 1066, 1648, 2203, 2448, 2812, 3178, 3328 |
| Hpy8I | GTNNAC | 7 cut(s) | 1066, 1648, 2203, 2448, 2812, 3178, 3328 |
| Hpy99I | CGWCG | 1 cut(s) | 1852 |
| HpyCH4IV | ACGT | 3 cut(s) | 646, 918, 1036 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 117, 976, 2514, 3269, 3278, 3287, 3437 |
| HpyF3I | CTNAG | 8 cut(s) | 167, 505, 903, 1184, 1397, 1450, 2725, 3139 |
| HpySE526I | ACGT | 3 cut(s) | 646, 918, 1036 |
| HspAI | GCGC | 1 cut(s) | 194 |
| Kpn2I | TCCGGA | 2 cut(s) | 435, 1217 |
| KroI | GCCGGC | 1 cut(s) | 2720 |
| KroNI | GCCGGC | 1 cut(s) | 2722 |
| Ksp22I | TGATCA | 3 cut(s) | 3049, 3253, 3334 |
| LmnI | GCTCC | 2 cut(s) | 565, 3162 |
| Lsp1109I | GCAGC | 6 cut(s) | 461, 721, 1110, 1132, 3293, 3440 |
| MaeI | CTAG | 8 cut(s) | 375, 878, 980, 1514, 1551, 2231, 2874, 3092 |
| MaeII | ACGT | 3 cut(s) | 646, 918, 1036 |
| MaeIII | GTNAC | 3 cut(s) | 1271, 2257, 2965 |
| MbiI | CCGCTC | 1 cut(s) | 2280 |
| MfeI | CAATTG | 9 cut(s) | 207, 1612, 1782, 1920, 1989, 2058, 2127, 2140, 2687 |
| MflI | RGATCY | 3 cut(s) | 288, 1462, 3088 |
| MhlI | GDGCHC | 4 cut(s) | 168, 924, 1650, 2249 |
| MluI | ACGCGT | 1 cut(s) | 2091 |
| MlyI | GAGTC | 7 cut(s) | 224, 1345, 1449, 1667, 1750, 2453, 3044 |
| MmeI | TCCRAC | 7 cut(s) | 575, 1440, 1486, 1562, 2348, 2598, 3404 |
| Mph1103I | ATGCAT | 4 cut(s) | 256, 972, 1888, 2504 |
| MroI | TCCGGA | 2 cut(s) | 435, 1217 |
| MroNI | GCCGGC | 1 cut(s) | 2720 |
| MroXI | GAANNNNTTC | 2 cut(s) | 819, 2307 |
| MslI | CAYNNNNRTG | 9 cut(s) | 152, 965, 1059, 1115, 2819, 3051, 3057, 3207, 3342 |
| MspA1I | CMGCKG | 2 cut(s) | 1123, 3284 |
| MspI | CCGG | 8 cut(s) | 425, 436, 1019, 1218, 2666, 2721, 2771, 3318 |
| MspR9I | CCNGG | 8 cut(s) | 425, 1029, 2355, 2600, 2667, 2771, 3182, 3319 |
| MunI | CAATTG | 9 cut(s) | 207, 1612, 1782, 1920, 1989, 2058, 2127, 2140, 2687 |
| Mva1269I | GAATGC | 2 cut(s) | 410, 1495 |
| MvaI | CCWGG | 4 cut(s) | 1029, 2355, 2600, 3182 |
| MvnI | CGCG | 3 cut(s) | 891, 2093, 2517 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 117, 976, 2514, 3269, 3278, 3287, 3437 |
| NaeI | GCCGGC | 1 cut(s) | 2722 |
| NciI | CCSGG | 4 cut(s) | 425, 2667, 2771, 3319 |
| NcoI | CCATGG | 2 cut(s) | 50, 1709 |
| NdeI | CATATG | 1 cut(s) | 310 |
| NgoMIV | GCCGGC | 1 cut(s) | 2720 |
| NheI | GCTAGC | 1 cut(s) | 374 |
| NlaIV | GGNNCC | 5 cut(s) | 2246, 2476, 3176, 3369, 3452 |
| NmuCI | GTSAC | 2 cut(s) | 1271, 2257 |
| NruI | TCGCGA | 1 cut(s) | 2517 |
| NsiI | ATGCAT | 4 cut(s) | 256, 972, 1888, 2504 |
| NspI | RCATGY | 6 cut(s) | 837, 1142, 2502, 2720, 2738, 3075 |
| OliI | CACNNNNGTG | 1 cut(s) | 2819 |
| PaeI | GCATGC | 2 cut(s) | 2502, 2720 |
| PaeR7I | CTCGAG | 1 cut(s) | 581 |
| PagI | TCATGA | 6 cut(s) | 523, 571, 1054, 2995, 3046, 3340 |
| PciI | ACATGT | 2 cut(s) | 1138, 3071 |
| PctI | GAATGC | 2 cut(s) | 410, 1495 |
| PdiI | GCCGGC | 1 cut(s) | 2722 |
| PdmI | GAANNNNTTC | 2 cut(s) | 819, 2307 |
| PflFI | GACNNNGTC | 2 cut(s) | 431, 3034 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 562, 1715 |
| PfoI | TCCNGGA | 2 cut(s) | 2665, 2769 |
| PkrI | GCNGC | 8 cut(s) | 451, 466, 736, 893, 1122, 1125, 3283, 3430 |
| PleI | GAGTC | 7 cut(s) | 223, 1344, 1448, 1666, 1750, 2452, 3043 |
| PpsI | GAGTC | 7 cut(s) | 223, 1344, 1448, 1666, 1750, 2452, 3043 |
| PscI | ACATGT | 2 cut(s) | 1138, 3071 |
| Psp124BI | GAGCTC | 1 cut(s) | 168 |
| Psp6I | CCWGG | 4 cut(s) | 1027, 2353, 2598, 3180 |
| PspFI | CCCAGC | 2 cut(s) | 2373, 2494 |
| PspGI | CCWGG | 4 cut(s) | 1027, 2353, 2598, 3180 |
| PspN4I | GGNNCC | 5 cut(s) | 2246, 2476, 3176, 3369, 3452 |
| PspPI | GGNCC | 4 cut(s) | 433, 614, 934, 3175 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2186, 2218 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2417 |
| PsuI | RGATCY | 3 cut(s) | 288, 1462, 3088 |
| PsyI | GACNNNGTC | 2 cut(s) | 431, 3034 |
| PvuII | CAGCTG | 2 cut(s) | 1123, 3284 |
| RruI | TCGCGA | 1 cut(s) | 2517 |
| RsaI | GTAC | 1 cut(s) | 636 |
| RsaNI | GTAC | 1 cut(s) | 635 |
| RseI | CAYNNNNRTG | 9 cut(s) | 152, 965, 1059, 1115, 2819, 3051, 3057, 3207, 3342 |
| SacI | GAGCTC | 1 cut(s) | 168 |
| SatI | GCNGC | 8 cut(s) | 450, 465, 735, 892, 1121, 1124, 3282, 3429 |
| Sau96I | GGNCC | 4 cut(s) | 433, 614, 934, 3175 |
| SchI | GAGTC | 7 cut(s) | 224, 1345, 1449, 1667, 1750, 2453, 3044 |
| ScrFI | CCNGG | 8 cut(s) | 425, 1029, 2355, 2600, 2667, 2771, 3182, 3319 |
| SduI | GDGCHC | 4 cut(s) | 168, 924, 1650, 2249 |
| SfcI | CTRYAG | 1 cut(s) | 3285 |
| Sfr274I | CTCGAG | 1 cut(s) | 581 |
| SinI | GGWCC | 3 cut(s) | 433, 614, 3175 |
| SlaI | CTCGAG | 1 cut(s) | 581 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 152, 965, 1059, 1115, 2819, 3051, 3057, 3207, 3342 |
| SmlI | CTYRAG | 4 cut(s) | 581, 663, 1246, 1625 |
| SmoI | CTYRAG | 4 cut(s) | 581, 663, 1246, 1625 |
| SphI | GCATGC | 2 cut(s) | 2502, 2720 |
| SsiI | CCGC | 5 cut(s) | 94, 464, 632, 891, 2280 |
| SspI | AATATT | 1 cut(s) | 1087 |
| SspMI | CTAG | 8 cut(s) | 375, 878, 980, 1514, 1551, 2231, 2874, 3092 |
| SstI | GAGCTC | 1 cut(s) | 168 |
| StyD4I | CCNGG | 8 cut(s) | 423, 1027, 2353, 2598, 2665, 2769, 3180, 3317 |
| StyI | CCWWGG | 7 cut(s) | 50, 1709, 1731, 1869, 2076, 2873, 3454 |
| TaiI | ACGT | 3 cut(s) | 649, 921, 1039 |
| TauI | GCSGC | 2 cut(s) | 467, 894 |
| TscAI | CASTG | 4 cut(s) | 28, 520, 2203, 2302 |
| TseFI | GTSAC | 2 cut(s) | 1271, 2257 |
| TseI | GCWGC | 6 cut(s) | 449, 734, 1120, 1123, 3281, 3428 |
| Tsp45I | GTSAC | 2 cut(s) | 1271, 2257 |
| TspGWI | ACGGA | 3 cut(s) | 627, 1586, 2220 |
| TspRI | CASTG | 4 cut(s) | 28, 520, 2203, 2302 |
| Tth111I | GACNNNGTC | 2 cut(s) | 431, 3034 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 562, 1715 |
| VneI | GTGCAC | 1 cut(s) | 1646 |
| VpaK11BI | GGWCC | 3 cut(s) | 433, 614, 3175 |
| XapI | RAATTY | 6 cut(s) | 410, 469, 1480, 1631, 2510, 2856 |
| XbaI | TCTAGA | 2 cut(s) | 2230, 3091 |
| XceI | RCATGY | 6 cut(s) | 837, 1142, 2502, 2720, 2738, 3075 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 268 |
| XhoI | CTCGAG | 1 cut(s) | 581 |
| XmaJI | CCTAGG | 1 cut(s) | 2873 |
| XmiI | GTMKAC | 1 cut(s) | 3327 |
| XmnI | GAANNNNTTC | 2 cut(s) | 819, 2307 |
| XspI | CTAG | 8 cut(s) | 375, 878, 980, 1514, 1551, 2231, 2874, 3092 |
| Zsp2I | ATGCAT | 4 cut(s) | 256, 972, 1888, 2504 |