Transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 228 |
| AciI | CCGC | 1 cut(s) | 402 |
| AcuI | CTGAAG | 1 cut(s) | 403 |
| AfaI | GTAC | 2 cut(s) | 57, 670 |
| AgsI | TTSAA | 4 cut(s) | 127, 167, 266, 686 |
| AjnI | CCWGG | 3 cut(s) | 100, 438, 709 |
| AluBI | AGCT | 5 cut(s) | 170, 387, 426, 589, 623 |
| AluI | AGCT | 5 cut(s) | 170, 387, 426, 589, 623 |
| Alw26I | GTCTC | 1 cut(s) | 209 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 426, 623 |
| ApeKI | GCWGC | 1 cut(s) | 623 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 182, 214, 355, 387 |
| AspS9I | GGNCC | 3 cut(s) | 113, 433, 713 |
| AsuHPI | GGTGA | 2 cut(s) | 200, 527 |
| AvaII | GGWCC | 3 cut(s) | 113, 433, 713 |
| BaeGI | GKGCMC | 1 cut(s) | 453 |
| BbsI | GAAGAC | 1 cut(s) | 546 |
| BbvI | GCAGC | 1 cut(s) | 610 |
| BccI | CCATC | 2 cut(s) | 292, 695 |
| BciT130I | CCWGG | 3 cut(s) | 102, 440, 711 |
| BclI | TGATCA | 1 cut(s) | 355 |
| BcoDI | GTCTC | 1 cut(s) | 209 |
| BfaI | CTAG | 1 cut(s) | 444 |
| BfmI | CTRYAG | 1 cut(s) | 193 |
| BisI | GCNGC | 1 cut(s) | 624 |
| BlsI | GCNGC | 1 cut(s) | 625 |
| Bme1390I | CCNGG | 3 cut(s) | 102, 440, 711 |
| Bme18I | GGWCC | 3 cut(s) | 113, 433, 713 |
| BmgT120I | GGNCC | 3 cut(s) | 113, 433, 713 |
| BmiI | GGNNCC | 2 cut(s) | 434, 708 |
| BmrFI | CCNGG | 3 cut(s) | 102, 440, 711 |
| BmsI | GCATC | 2 cut(s) | 334, 336 |
| BpiI | GAAGAC | 1 cut(s) | 546 |
| BsaI | GGTCTC | 1 cut(s) | 209 |
| Bse1I | ACTGG | 1 cut(s) | 577 |
| BseBI | CCWGG | 3 cut(s) | 102, 440, 711 |
| BseMII | CTCAG | 2 cut(s) | 72, 576 |
| BseNI | ACTGG | 1 cut(s) | 577 |
| BseRI | GAGGAG | 2 cut(s) | 515, 518 |
| BseSI | GKGCMC | 1 cut(s) | 453 |
| BseXI | GCAGC | 1 cut(s) | 610 |
| BseYI | CCCAGC | 1 cut(s) | 589 |
| BsgI | GTGCAG | 1 cut(s) | 226 |
| BsmAI | GTCTC | 1 cut(s) | 209 |
| Bso31I | GGTCTC | 1 cut(s) | 209 |
| Bsp1286I | GDGCHC | 1 cut(s) | 453 |
| Bsp143I | GATC | 2 cut(s) | 355, 694 |
| BspACI | CCGC | 1 cut(s) | 402 |
| BspCNI | CTCAG | 2 cut(s) | 73, 577 |
| BspHI | TCATGA | 1 cut(s) | 697 |
| BspLI | GGNNCC | 2 cut(s) | 434, 708 |
| BspMAI | CTGCAG | 1 cut(s) | 197 |
| BspTNI | GGTCTC | 1 cut(s) | 209 |
| BsrI | ACTGG | 1 cut(s) | 577 |
| BssMI | GATC | 2 cut(s) | 355, 694 |
| Bst2UI | CCWGG | 3 cut(s) | 102, 440, 711 |
| Bst4CI | ACNGT | 2 cut(s) | 515, 631 |
| Bst6I | CTCTTC | 2 cut(s) | 422, 560 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 623 |
| BstDEI | CTNAG | 3 cut(s) | 81, 383, 585 |
| BstKTI | GATC | 2 cut(s) | 358, 697 |
| BstMAI | GTCTC | 1 cut(s) | 209 |
| BstMBI | GATC | 2 cut(s) | 355, 694 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 623 |
| BstNI | CCWGG | 3 cut(s) | 102, 440, 711 |
| BstSCI | CCNGG | 3 cut(s) | 100, 438, 709 |
| BstSFI | CTRYAG | 1 cut(s) | 193 |
| BstSLI | GKGCMC | 1 cut(s) | 453 |
| BstV1I | GCAGC | 1 cut(s) | 610 |
| BstV2I | GAAGAC | 1 cut(s) | 546 |
| BtsIMutI | CAGTG | 3 cut(s) | 18, 314, 627 |
| CaiI | CAGNNNCTG | 2 cut(s) | 426, 623 |
| CciI | TCATGA | 1 cut(s) | 697 |
| Cfr13I | GGNCC | 3 cut(s) | 113, 433, 713 |
| CsiI | ACCWGGT | 1 cut(s) | 709 |
| Csp6I | GTAC | 2 cut(s) | 56, 669 |
| CviAII | CATG | 4 cut(s) | 232, 293, 476, 698 |
| CviJI | RGCY | 9 cut(s) | 145, 170, 283, 301, 387, 426, 443, 589, 623 |
| CviKI_1 | RGCY | 9 cut(s) | 145, 170, 283, 301, 387, 426, 443, 589, 623 |
| CviQI | GTAC | 2 cut(s) | 56, 669 |
| DdeI | CTNAG | 3 cut(s) | 81, 383, 585 |
| DpnI | GATC | 2 cut(s) | 357, 696 |
| DpnII | GATC | 2 cut(s) | 355, 694 |
| DraI | TTTAAA | 1 cut(s) | 730 |
| Eam1104I | CTCTTC | 2 cut(s) | 422, 560 |
| EarI | CTCTTC | 2 cut(s) | 422, 560 |
| Eco31I | GGTCTC | 1 cut(s) | 209 |
| Eco47I | GGWCC | 3 cut(s) | 113, 433, 713 |
| Eco57I | CTGAAG | 1 cut(s) | 403 |
| EcoRII | CCWGG | 3 cut(s) | 100, 438, 709 |
| FaeI | CATG | 4 cut(s) | 235, 296, 479, 701 |
| FatI | CATG | 4 cut(s) | 231, 292, 475, 697 |
| FbaI | TGATCA | 1 cut(s) | 355 |
| FblI | GTMKAC | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 624 |
| Fsp4HI | GCNGC | 1 cut(s) | 624 |
| FspBI | CTAG | 1 cut(s) | 444 |
| GluI | GCNGC | 1 cut(s) | 624 |
| GsaI | CCCAGC | 1 cut(s) | 593 |
| Hin1II | CATG | 4 cut(s) | 235, 296, 479, 701 |
| HincII | GTYRAC | 1 cut(s) | 380 |
| HindII | GTYRAC | 1 cut(s) | 380 |
| HinfI | GANTC | 3 cut(s) | 8, 61, 542 |
| HphI | GGTGA | 2 cut(s) | 200, 527 |
| Hpy166II | GTNNAC | 3 cut(s) | 229, 380, 436 |
| Hpy188I | TCNGA | 3 cut(s) | 82, 422, 586 |
| Hpy188III | TCNNGA | 3 cut(s) | 331, 657, 698 |
| Hpy8I | GTNNAC | 3 cut(s) | 229, 380, 436 |
| Hpy99I | CGWCG | 4 cut(s) | 467, 470, 473, 515 |
| HpyAV | CCTTC | 1 cut(s) | 104 |
| HpyCH4III | ACNGT | 2 cut(s) | 515, 631 |
| HpyCH4V | TGCA | 3 cut(s) | 195, 243, 347 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 623 |
| HpyF3I | CTNAG | 3 cut(s) | 81, 383, 585 |
| Hsp92II | CATG | 4 cut(s) | 235, 296, 479, 701 |
| Ksp22I | TGATCA | 1 cut(s) | 355 |
| Kzo9I | GATC | 2 cut(s) | 355, 694 |
| Lsp1109I | GCAGC | 1 cut(s) | 610 |
| LweI | GCATC | 2 cut(s) | 334, 336 |
| MabI | ACCWGGT | 1 cut(s) | 709 |
| MaeI | CTAG | 1 cut(s) | 444 |
| MaeIII | GTNAC | 2 cut(s) | 188, 257 |
| MalI | GATC | 2 cut(s) | 357, 696 |
| MboI | GATC | 2 cut(s) | 355, 694 |
| MboII | GAAGA | 4 cut(s) | 409, 533, 551, 577 |
| MhlI | GDGCHC | 1 cut(s) | 453 |
| MlyI | GAGTC | 1 cut(s) | 536 |
| MseI | TTAA | 1 cut(s) | 729 |
| MslI | CAYNNNNRTG | 2 cut(s) | 253, 480 |
| MspR9I | CCNGG | 3 cut(s) | 102, 440, 711 |
| MvaI | CCWGG | 3 cut(s) | 102, 440, 711 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 623 |
| NdeII | GATC | 2 cut(s) | 355, 694 |
| NlaIII | CATG | 4 cut(s) | 235, 296, 479, 701 |
| NlaIV | GGNNCC | 2 cut(s) | 434, 708 |
| NmeAIII | GCCGAG | 1 cut(s) | 524 |
| NmuCI | GTSAC | 1 cut(s) | 188 |
| PagI | TCATGA | 1 cut(s) | 697 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 468 |
| PfeI | GAWTC | 2 cut(s) | 8, 61 |
| PfoI | TCCNGGA | 1 cut(s) | 100 |
| PkrI | GCNGC | 1 cut(s) | 625 |
| PleI | GAGTC | 1 cut(s) | 536 |
| PpsI | GAGTC | 1 cut(s) | 536 |
| Psp6I | CCWGG | 3 cut(s) | 100, 438, 709 |
| PspFI | CCCAGC | 1 cut(s) | 589 |
| PspGI | CCWGG | 3 cut(s) | 100, 438, 709 |
| PspN4I | GGNNCC | 2 cut(s) | 434, 708 |
| PspPI | GGNCC | 3 cut(s) | 113, 433, 713 |
| PstI | CTGCAG | 1 cut(s) | 197 |
| PstNI | CAGNNNCTG | 2 cut(s) | 426, 623 |
| RsaI | GTAC | 2 cut(s) | 57, 670 |
| RsaNI | GTAC | 2 cut(s) | 56, 669 |
| RseI | CAYNNNNRTG | 2 cut(s) | 253, 480 |
| SaqAI | TTAA | 1 cut(s) | 729 |
| SatI | GCNGC | 1 cut(s) | 624 |
| Sau3AI | GATC | 2 cut(s) | 355, 694 |
| Sau96I | GGNCC | 3 cut(s) | 113, 433, 713 |
| SchI | GAGTC | 1 cut(s) | 536 |
| ScrFI | CCNGG | 3 cut(s) | 102, 440, 711 |
| SduI | GDGCHC | 1 cut(s) | 453 |
| SexAI | ACCWGGT | 1 cut(s) | 709 |
| SfaNI | GCATC | 2 cut(s) | 334, 336 |
| SfcI | CTRYAG | 1 cut(s) | 193 |
| SinI | GGWCC | 3 cut(s) | 113, 433, 713 |
| SmiI | ATTTAAAT | 1 cut(s) | 730 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 253, 480 |
| SsiI | CCGC | 1 cut(s) | 402 |
| SspMI | CTAG | 1 cut(s) | 444 |
| StyD4I | CCNGG | 3 cut(s) | 100, 438, 709 |
| SwaI | ATTTAAAT | 1 cut(s) | 730 |
| TaaI | ACNGT | 2 cut(s) | 515, 631 |
| TaqI | TCGA | 1 cut(s) | 693 |
| TfiI | GAWTC | 2 cut(s) | 8, 61 |
| Tru1I | TTAA | 1 cut(s) | 729 |
| Tru9I | TTAA | 1 cut(s) | 729 |
| TscAI | CASTG | 3 cut(s) | 18, 321, 634 |
| TseFI | GTSAC | 1 cut(s) | 188 |
| TseI | GCWGC | 1 cut(s) | 623 |
| Tsp45I | GTSAC | 1 cut(s) | 188 |
| TspDTI | ATGAA | 2 cut(s) | 237, 534 |
| TspGWI | ACGGA | 1 cut(s) | 73 |
| TspRI | CASTG | 3 cut(s) | 18, 321, 634 |
| VpaK11BI | GGWCC | 3 cut(s) | 113, 433, 713 |
| XmiI | GTMKAC | 1 cut(s) | 228 |
| XspI | CTAG | 1 cut(s) | 444 |