TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 97 - 259 | 5.9e-56 | TIR domain |
| TIR_2 | PF13676 | 99 - 195 | 2.8e-16 | TIR domain |
| NB-ARC | PF00931 | 281 - 444 | 7.6e-23 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 516 - 584 | 6.2e-13 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 704 - 865 | 6.9e-09 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 776 - 861 | 1.5e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_13 | PF23286 | 850 - 1018 | 1.9e-19 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_8 | PF13855 | 873 - 928 | 3.1e-06 | Leucine rich repeat |
| LRR_14 | PF23598 | 873 - 933 | 5.2e-06 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1217 |
| AatII | GACGTC | 1 cut(s) | 1146 |
| Acc16I | TGCGCA | 2 cut(s) | 1070, 2543 |
| AccI | GTMKAC | 5 cut(s) | 838, 1266, 1593, 1800, 2525 |
| AccIII | TCCGGA | 1 cut(s) | 3049 |
| AciI | CCGC | 5 cut(s) | 134, 354, 771, 2080, 3007 |
| AclI | AACGTT | 1 cut(s) | 1234 |
| AclWI | GGATC | 6 cut(s) | 125, 138, 575, 588, 1478, 2670 |
| AcsI | RAATTY | 7 cut(s) | 740, 2113, 2137, 2413, 2598, 2758, 3045 |
| AcuI | CTGAAG | 1 cut(s) | 2161 |
| AcyI | GRCGYC | 1 cut(s) | 1143 |
| AdeI | CACNNNGTG | 2 cut(s) | 1370, 1757 |
| AfaI | GTAC | 3 cut(s) | 594, 1937, 2942 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1666 |
| AflII | CTTAAG | 1 cut(s) | 2407 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 845 |
| AjnI | CCWGG | 2 cut(s) | 901, 1753 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1681, 1713 |
| Alw21I | GWGCWC | 2 cut(s) | 2789, 3057 |
| Alw26I | GTCTC | 3 cut(s) | 480, 1021, 3041 |
| AlwI | GGATC | 6 cut(s) | 125, 138, 575, 588, 1478, 2670 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1643 |
| Ama87I | CYCGRG | 1 cut(s) | 774 |
| Aor13HI | TCCGGA | 1 cut(s) | 3049 |
| AoxI | GGCC | 5 cut(s) | 710, 1006, 1196, 1390, 2003 |
| ApeKI | GCWGC | 5 cut(s) | 227, 809, 1773, 2361, 2739 |
| ApoI | RAATTY | 7 cut(s) | 740, 2113, 2137, 2413, 2598, 2758, 3045 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 876, 1322 |
| AspLEI | GCGC | 4 cut(s) | 623, 1071, 1380, 2544 |
| AspS9I | GGNCC | 3 cut(s) | 899, 1196, 1337 |
| AsuC2I | CCSGG | 3 cut(s) | 128, 1200, 1764 |
| AsuHPI | GGTGA | 5 cut(s) | 263, 1595, 1743, 1769, 2835 |
| AvaI | CYCGRG | 1 cut(s) | 774 |
| AvaII | GGWCC | 2 cut(s) | 899, 1337 |
| BamHI | GGATCC | 2 cut(s) | 130, 580 |
| BanII | GRGCYC | 2 cut(s) | 1764, 3057 |
| BauI | CACGAG | 1 cut(s) | 3031 |
| BbsI | GAAGAC | 1 cut(s) | 2966 |
| Bbv12I | GWGCWC | 2 cut(s) | 2789, 3057 |
| BbvI | GCAGC | 5 cut(s) | 239, 796, 1785, 2373, 2751 |
| BccI | CCATC | 7 cut(s) | 702, 716, 1186, 2038, 2392, 2605, 2854 |
| BceAI | ACGGC | 2 cut(s) | 2506, 2719 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2024, 2058 |
| BciT130I | CCWGG | 2 cut(s) | 903, 1755 |
| BciVI | GTATCC | 1 cut(s) | 313 |
| BclI | TGATCA | 3 cut(s) | 268, 637, 1291 |
| BcnI | CCSGG | 3 cut(s) | 128, 1200, 1764 |
| BcoDI | GTCTC | 3 cut(s) | 480, 1021, 3041 |
| BfaI | CTAG | 8 cut(s) | 147, 1010, 1355, 1613, 2313, 2477, 2492, 2861 |
| BfrI | CTTAAG | 1 cut(s) | 2407 |
| BfuI | GTATCC | 1 cut(s) | 313 |
| BglII | AGATCT | 1 cut(s) | 992 |
| BisI | GCNGC | 5 cut(s) | 228, 810, 1774, 2362, 2740 |
| BlsI | GCNGC | 5 cut(s) | 229, 811, 1775, 2363, 2741 |
| Bme1390I | CCNGG | 5 cut(s) | 128, 903, 1200, 1755, 1764 |
| Bme18I | GGWCC | 2 cut(s) | 899, 1337 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 845 |
| BmeT110I | CYCGRG | 1 cut(s) | 774 |
| BmgT120I | GGNCC | 3 cut(s) | 899, 1196, 1337 |
| BmiI | GGNNCC | 4 cut(s) | 132, 582, 900, 2238 |
| BmrFI | CCNGG | 5 cut(s) | 128, 903, 1200, 1755, 1764 |
| BmsI | GCATC | 7 cut(s) | 497, 853, 1098, 1516, 1692, 1854, 2458 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1146 |
| BpiI | GAAGAC | 1 cut(s) | 2966 |
| BpmI | CTGGAG | 3 cut(s) | 924, 1326, 1980 |
| BpuEI | CTTGAG | 3 cut(s) | 2390, 2560, 2773 |
| BpuMI | CCSGG | 3 cut(s) | 128, 1200, 1764 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1290 |
| BsaHI | GRCGYC | 1 cut(s) | 1143 |
| BsaJI | CCNNGG | 1 cut(s) | 867 |
| BsaWI | WCCGGW | 1 cut(s) | 3049 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 414, 444 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1666 |
| Bse1I | ACTGG | 6 cut(s) | 231, 519, 563, 1648, 1984, 2799 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1290 |
| BseAI | TCCGGA | 1 cut(s) | 3049 |
| BseBI | CCWGG | 2 cut(s) | 903, 1755 |
| BseDI | CCNNGG | 1 cut(s) | 867 |
| BseJI | GATNNNNATC | 1 cut(s) | 1290 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1666 |
| BseMII | CTCAG | 4 cut(s) | 293, 600, 2772, 2967 |
| BseNI | ACTGG | 6 cut(s) | 231, 519, 563, 1648, 1984, 2799 |
| BseRI | GAGGAG | 3 cut(s) | 422, 423, 461 |
| BseXI | GCAGC | 5 cut(s) | 239, 796, 1785, 2373, 2751 |
| BseYI | CCCAGC | 1 cut(s) | 2925 |
| BsgI | GTGCAG | 3 cut(s) | 795, 1392, 2758 |
| BshFI | GGCC | 5 cut(s) | 712, 1008, 1198, 1392, 2005 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2789, 3057 |
| BsiHKCI | CYCGRG | 1 cut(s) | 774 |
| BsiSI | CCGG | 5 cut(s) | 127, 1199, 1386, 1764, 3050 |
| BslFI | GGGAC | 2 cut(s) | 912, 2118 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1666 |
| BsmAI | GTCTC | 3 cut(s) | 480, 1021, 3041 |
| BsmFI | GGGAC | 2 cut(s) | 912, 2118 |
| BsmI | GAATGC | 4 cut(s) | 536, 1322, 1324, 1888 |
| BsnI | GGCC | 5 cut(s) | 712, 1008, 1198, 1392, 2005 |
| BsoBI | CYCGRG | 1 cut(s) | 774 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1764, 2789, 3057 |
| Bsp13I | TCCGGA | 1 cut(s) | 3049 |
| BspACI | CCGC | 5 cut(s) | 134, 354, 771, 2080, 3007 |
| BspANI | GGCC | 5 cut(s) | 712, 1008, 1198, 1392, 2005 |
| BspCNI | CTCAG | 4 cut(s) | 294, 599, 2773, 2966 |
| BspEI | TCCGGA | 1 cut(s) | 3049 |
| BspHI | TCATGA | 1 cut(s) | 2436 |
| BspLI | GGNNCC | 4 cut(s) | 132, 582, 900, 2238 |
| BspPI | GGATC | 6 cut(s) | 125, 138, 575, 588, 1478, 2670 |
| BspQI | GCTCTTC | 1 cut(s) | 2475 |
| BspTI | CTTAAG | 1 cut(s) | 2407 |
| BsrI | ACTGG | 6 cut(s) | 231, 519, 563, 1648, 1984, 2799 |
| BssECI | CCNNGG | 1 cut(s) | 867 |
| BssNAI | GTATAC | 2 cut(s) | 1267, 2526 |
| BssNI | GRCGYC | 1 cut(s) | 1143 |
| BssSI | CACGAG | 1 cut(s) | 3031 |
| BssT1I | CCWWGG | 1 cut(s) | 867 |
| Bst1107I | GTATAC | 2 cut(s) | 1267, 2526 |
| Bst2BI | CACGAG | 1 cut(s) | 3031 |
| Bst2UI | CCWGG | 2 cut(s) | 903, 1755 |
| Bst4CI | ACNGT | 3 cut(s) | 1123, 1370, 1411 |
| Bst6I | CTCTTC | 5 cut(s) | 400, 1901, 2031, 2388, 2475 |
| BstACI | GRCGYC | 1 cut(s) | 1143 |
| BstAFI | CTTAAG | 1 cut(s) | 2407 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1370 |
| BstC8I | GCNNGC | 5 cut(s) | 194, 952, 1621, 2366, 2983 |
| BstHHI | GCGC | 4 cut(s) | 623, 1071, 1380, 2544 |
| BstMAI | GTCTC | 3 cut(s) | 480, 1021, 3041 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 193, 888, 1370, 1858, 2002, 2263, 2361, 2482 |
| BstNI | CCWGG | 2 cut(s) | 903, 1755 |
| BstNSI | RCATGY | 1 cut(s) | 1592 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1146 |
| BstSCI | CCNGG | 5 cut(s) | 126, 901, 1198, 1753, 1762 |
| BstV1I | GCAGC | 5 cut(s) | 239, 796, 1785, 2373, 2751 |
| BstV2I | GAAGAC | 1 cut(s) | 2966 |
| BstX2I | RGATCY | 4 cut(s) | 130, 580, 992, 1483 |
| BstYI | RGATCY | 4 cut(s) | 130, 580, 992, 1483 |
| BstZ17I | GTATAC | 2 cut(s) | 1267, 2526 |
| BsuI | GTATCC | 1 cut(s) | 313 |
| BsuRI | GGCC | 5 cut(s) | 712, 1008, 1198, 1392, 2005 |
| BtsI | GCAGTG | 2 cut(s) | 1078, 1380 |
| BtsIMutI | CAGTG | 4 cut(s) | 1078, 1380, 1644, 2185 |
| Cac8I | GCNNGC | 5 cut(s) | 194, 952, 1621, 2366, 2983 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1643 |
| CciI | TCATGA | 1 cut(s) | 2436 |
| CfoI | GCGC | 4 cut(s) | 623, 1071, 1380, 2544 |
| Cfr13I | GGNCC | 3 cut(s) | 899, 1196, 1337 |
| CsiI | ACCWGGT | 1 cut(s) | 1753 |
| Csp6I | GTAC | 3 cut(s) | 593, 1936, 2941 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 100, 135 |
| CviAII | CATG | 8 cut(s) | 661, 792, 883, 1589, 1706, 2042, 2305, 2437 |
| CviQI | GTAC | 3 cut(s) | 593, 1936, 2941 |
| DraI | TTTAAA | 3 cut(s) | 1047, 1545, 1579 |
| DraIII | CACNNNGTG | 2 cut(s) | 1370, 1757 |
| DriI | GACNNNNNGTC | 1 cut(s) | 845 |
| Eam1104I | CTCTTC | 5 cut(s) | 400, 1901, 2031, 2388, 2475 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 845 |
| EarI | CTCTTC | 5 cut(s) | 400, 1901, 2031, 2388, 2475 |
| EciI | GGCGGA | 2 cut(s) | 123, 760 |
| Ecl136II | GAGCTC | 1 cut(s) | 3055 |
| Eco130I | CCWWGG | 1 cut(s) | 867 |
| Eco147I | AGGCCT | 1 cut(s) | 1392 |
| Eco24I | GRGCYC | 2 cut(s) | 1764, 3057 |
| Eco32I | GATATC | 2 cut(s) | 1564, 1875 |
| Eco47I | GGWCC | 2 cut(s) | 899, 1337 |
| Eco53kI | GAGCTC | 1 cut(s) | 3055 |
| Eco57I | CTGAAG | 1 cut(s) | 2161 |
| Eco88I | CYCGRG | 1 cut(s) | 774 |
| EcoICRI | GAGCTC | 1 cut(s) | 3055 |
| EcoO109I | RGGNCCY | 1 cut(s) | 899 |
| EcoRII | CCWGG | 2 cut(s) | 901, 1753 |
| EcoRV | GATATC | 2 cut(s) | 1564, 1875 |
| EcoT14I | CCWWGG | 1 cut(s) | 867 |
| EcoT22I | ATGCAT | 3 cut(s) | 490, 1324, 1707 |
| EcoT38I | GRGCYC | 2 cut(s) | 1764, 3057 |
| ErhI | CCWWGG | 1 cut(s) | 867 |
| FaeI | CATG | 8 cut(s) | 664, 795, 886, 1592, 1709, 2045, 2308, 2440 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 595, 627, 1014, 1046 |
| FaqI | GGGAC | 2 cut(s) | 912, 2118 |
| FatI | CATG | 8 cut(s) | 660, 791, 882, 1588, 1705, 2041, 2304, 2436 |
| FauNDI | CATATG | 2 cut(s) | 893, 936 |
| FbaI | TGATCA | 3 cut(s) | 268, 637, 1291 |
| FblI | GTMKAC | 5 cut(s) | 838, 1266, 1593, 1800, 2525 |
| Fnu4HI | GCNGC | 5 cut(s) | 228, 810, 1774, 2362, 2740 |
| FriOI | GRGCYC | 2 cut(s) | 1764, 3057 |
| Fsp4HI | GCNGC | 5 cut(s) | 228, 810, 1774, 2362, 2740 |
| FspBI | CTAG | 8 cut(s) | 147, 1010, 1355, 1613, 2313, 2477, 2492, 2861 |
| FspI | TGCGCA | 2 cut(s) | 1070, 2543 |
| GlaI | GCGC | 4 cut(s) | 622, 1070, 1379, 2543 |
| GluI | GCNGC | 5 cut(s) | 228, 810, 1774, 2362, 2740 |
| GsaI | CCCAGC | 1 cut(s) | 2929 |
| GsuI | CTGGAG | 3 cut(s) | 924, 1326, 1980 |
| HaeIII | GGCC | 5 cut(s) | 712, 1008, 1198, 1392, 2005 |
| HapII | CCGG | 5 cut(s) | 127, 1199, 1386, 1764, 3050 |
| HhaI | GCGC | 4 cut(s) | 623, 1071, 1380, 2544 |
| Hin1I | GRCGYC | 1 cut(s) | 1143 |
| Hin1II | CATG | 8 cut(s) | 664, 795, 886, 1592, 1709, 2045, 2308, 2440 |
| Hin6I | GCGC | 4 cut(s) | 621, 1069, 1378, 2542 |
| HinP1I | GCGC | 4 cut(s) | 621, 1069, 1378, 2542 |
| HincII | GTYRAC | 3 cut(s) | 850, 1801, 3001 |
| HindII | GTYRAC | 3 cut(s) | 850, 1801, 3001 |
| HindIII | AAGCTT | 4 cut(s) | 1296, 1617, 2264, 2768 |
| HpaII | CCGG | 5 cut(s) | 127, 1199, 1386, 1764, 3050 |
| HphI | GGTGA | 5 cut(s) | 263, 1595, 1743, 1769, 2835 |
| Hpy166II | GTNNAC | 9 cut(s) | 784, 839, 850, 1267, 1594, 1801, 1938, 2526, 3001 |
| Hpy188I | TCNGA | 9 cut(s) | 213, 589, 2035, 2383, 2654, 2682, 2879, 2896, 3041 |
| Hpy8I | GTNNAC | 9 cut(s) | 784, 839, 850, 1267, 1594, 1801, 1938, 2526, 3001 |
| HpyAV | CCTTC | 8 cut(s) | 153, 391, 798, 959, 1057, 1076, 1403, 3075 |
| HpyCH4III | ACNGT | 3 cut(s) | 1123, 1370, 1411 |
| HpyCH4IV | ACGT | 3 cut(s) | 256, 1143, 1234 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 193, 888, 1370, 1858, 2002, 2263, 2361, 2482 |
| HpySE526I | ACGT | 3 cut(s) | 256, 1143, 1234 |
| Hsp92I | GRCGYC | 1 cut(s) | 1143 |
| Hsp92II | CATG | 8 cut(s) | 664, 795, 886, 1592, 1709, 2045, 2308, 2440 |
| HspAI | GCGC | 4 cut(s) | 621, 1069, 1378, 2542 |
| Kpn2I | TCCGGA | 1 cut(s) | 3049 |
| Ksp22I | TGATCA | 3 cut(s) | 268, 637, 1291 |
| LguI | GCTCTTC | 1 cut(s) | 2475 |
| LmnI | GCTCC | 4 cut(s) | 1180, 1857, 3052, 3060 |
| Lsp1109I | GCAGC | 5 cut(s) | 239, 796, 1785, 2373, 2751 |
| LweI | GCATC | 7 cut(s) | 497, 853, 1098, 1516, 1692, 1854, 2458 |
| MabI | ACCWGGT | 1 cut(s) | 1753 |
| MaeI | CTAG | 8 cut(s) | 147, 1010, 1355, 1613, 2313, 2477, 2492, 2861 |
| MaeII | ACGT | 3 cut(s) | 256, 1143, 1234 |
| MaeIII | GTNAC | 5 cut(s) | 1639, 1749, 2269, 2386, 2645 |
| MfeI | CAATTG | 5 cut(s) | 441, 819, 924, 1016, 2670 |
| MflI | RGATCY | 4 cut(s) | 130, 580, 992, 1483 |
| MhlI | GDGCHC | 3 cut(s) | 1764, 2789, 3057 |
| MlyI | GAGTC | 8 cut(s) | 458, 839, 1046, 1095, 1757, 1918, 2908, 3043 |
| MmeI | TCCRAC | 4 cut(s) | 1179, 2004, 2230, 2831 |
| Mph1103I | ATGCAT | 3 cut(s) | 490, 1324, 1707 |
| MroI | TCCGGA | 1 cut(s) | 3049 |
| MroXI | GAANNNNTTC | 2 cut(s) | 876, 1322 |
| MslI | CAYNNNNRTG | 2 cut(s) | 496, 2095 |
| MspCI | CTTAAG | 1 cut(s) | 2407 |
| MspI | CCGG | 5 cut(s) | 127, 1199, 1386, 1764, 3050 |
| MspR9I | CCNGG | 5 cut(s) | 128, 903, 1200, 1755, 1764 |
| MunI | CAATTG | 5 cut(s) | 441, 819, 924, 1016, 2670 |
| Mva1269I | GAATGC | 4 cut(s) | 536, 1322, 1324, 1888 |
| MvaI | CCWGG | 2 cut(s) | 903, 1755 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 193, 888, 1370, 1858, 2002, 2263, 2361, 2482 |
| NciI | CCSGG | 3 cut(s) | 128, 1200, 1764 |
| NdeI | CATATG | 2 cut(s) | 893, 936 |
| NlaIII | CATG | 8 cut(s) | 664, 795, 886, 1592, 1709, 2045, 2308, 2440 |
| NlaIV | GGNNCC | 4 cut(s) | 132, 582, 900, 2238 |
| NmuCI | GTSAC | 3 cut(s) | 1639, 1749, 2645 |
| NsbI | TGCGCA | 2 cut(s) | 1070, 2543 |
| NsiI | ATGCAT | 3 cut(s) | 490, 1324, 1707 |
| NspI | RCATGY | 1 cut(s) | 1592 |
| PagI | TCATGA | 1 cut(s) | 2436 |
| PceI | AGGCCT | 1 cut(s) | 1392 |
| PciSI | GCTCTTC | 1 cut(s) | 2475 |
| PctI | GAATGC | 4 cut(s) | 536, 1322, 1324, 1888 |
| PdmI | GAANNNNTTC | 2 cut(s) | 876, 1322 |
| PfoI | TCCNGGA | 1 cut(s) | 126 |
| PkrI | GCNGC | 5 cut(s) | 229, 811, 1775, 2363, 2741 |
| PleI | GAGTC | 8 cut(s) | 457, 838, 1046, 1094, 1756, 1917, 2908, 3042 |
| PpsI | GAGTC | 8 cut(s) | 457, 838, 1046, 1094, 1756, 1917, 2908, 3042 |
| PpuMI | RGGWCCY | 1 cut(s) | 899 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1146 |
| PsiI | TTATAA | 1 cut(s) | 1217 |
| Psp124BI | GAGCTC | 1 cut(s) | 3057 |
| Psp1406I | AACGTT | 1 cut(s) | 1234 |
| Psp5II | RGGWCCY | 1 cut(s) | 899 |
| Psp6I | CCWGG | 2 cut(s) | 901, 1753 |
| PspFI | CCCAGC | 1 cut(s) | 2925 |
| PspGI | CCWGG | 2 cut(s) | 901, 1753 |
| PspN4I | GGNNCC | 4 cut(s) | 132, 582, 900, 2238 |
| PspPI | GGNCC | 3 cut(s) | 899, 1196, 1337 |
| PspPPI | RGGWCCY | 1 cut(s) | 899 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1643 |
| PsuI | RGATCY | 4 cut(s) | 130, 580, 992, 1483 |
| RsaI | GTAC | 3 cut(s) | 594, 1937, 2942 |
| RsaNI | GTAC | 3 cut(s) | 593, 1936, 2941 |
| RseI | CAYNNNNRTG | 2 cut(s) | 496, 2095 |
| SacI | GAGCTC | 1 cut(s) | 3057 |
| SalI | GTCGAC | 1 cut(s) | 1799 |
| SapI | GCTCTTC | 1 cut(s) | 2475 |
| SatI | GCNGC | 5 cut(s) | 228, 810, 1774, 2362, 2740 |
| Sau96I | GGNCC | 3 cut(s) | 899, 1196, 1337 |
| SchI | GAGTC | 8 cut(s) | 458, 839, 1046, 1095, 1757, 1918, 2908, 3043 |
| ScrFI | CCNGG | 5 cut(s) | 128, 903, 1200, 1755, 1764 |
| SduI | GDGCHC | 3 cut(s) | 1764, 2789, 3057 |
| SexAI | ACCWGGT | 1 cut(s) | 1753 |
| SfaNI | GCATC | 7 cut(s) | 497, 853, 1098, 1516, 1692, 1854, 2458 |
| SinI | GGWCC | 2 cut(s) | 899, 1337 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 496, 2095 |
| SmlI | CTYRAG | 4 cut(s) | 2369, 2407, 2575, 2788 |
| SmoI | CTYRAG | 4 cut(s) | 2369, 2407, 2575, 2788 |
| SseBI | AGGCCT | 1 cut(s) | 1392 |
| SsiI | CCGC | 5 cut(s) | 134, 354, 771, 2080, 3007 |
| SspI | AATATT | 2 cut(s) | 877, 2068 |
| SspMI | CTAG | 8 cut(s) | 147, 1010, 1355, 1613, 2313, 2477, 2492, 2861 |
| SstI | GAGCTC | 1 cut(s) | 3057 |
| StuI | AGGCCT | 1 cut(s) | 1392 |
| StyD4I | CCNGG | 5 cut(s) | 126, 901, 1198, 1753, 1762 |
| StyI | CCWWGG | 1 cut(s) | 867 |
| TaaI | ACNGT | 3 cut(s) | 1123, 1370, 1411 |
| TaiI | ACGT | 3 cut(s) | 259, 1146, 1237 |
| TaqI | TCGA | 4 cut(s) | 178, 310, 452, 1800 |
| TatI | WGTACW | 1 cut(s) | 1935 |
| TscAI | CASTG | 4 cut(s) | 1078, 1380, 1644, 2185 |
| TseFI | GTSAC | 3 cut(s) | 1639, 1749, 2645 |
| TseI | GCWGC | 5 cut(s) | 227, 809, 1773, 2361, 2739 |
| Tsp45I | GTSAC | 3 cut(s) | 1639, 1749, 2645 |
| TspGWI | ACGGA | 8 cut(s) | 701, 1386, 1701, 2004, 2177, 2236, 2405, 2442 |
| TspRI | CASTG | 4 cut(s) | 1078, 1380, 1644, 2185 |
| Vha464I | CTTAAG | 1 cut(s) | 2407 |
| VpaK11BI | GGWCC | 2 cut(s) | 899, 1337 |
| XapI | RAATTY | 7 cut(s) | 740, 2113, 2137, 2413, 2598, 2758, 3045 |
| XbaI | TCTAGA | 2 cut(s) | 1354, 2491 |
| XceI | RCATGY | 1 cut(s) | 1592 |
| XmiI | GTMKAC | 5 cut(s) | 838, 1266, 1593, 1800, 2525 |
| XmnI | GAANNNNTTC | 2 cut(s) | 876, 1322 |
| XspI | CTAG | 8 cut(s) | 147, 1010, 1355, 1613, 2313, 2477, 2492, 2861 |
| ZraI | GACGTC | 1 cut(s) | 1144 |
| Zsp2I | ATGCAT | 3 cut(s) | 490, 1324, 1707 |