TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 62 - 124 | 5.1e-15 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_RPS2 | PF23247 | 232 - 334 | 5e-08 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_EndoS | PF23952 | 238 - 321 | 4.5e-06 | Endo-beta-N-acetylglucosaminidase EndoS LRR domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 479 |
| AciI | CCGC | 1 cut(s) | 867 |
| AclWI | GGATC | 3 cut(s) | 401, 686, 867 |
| AcsI | RAATTY | 7 cut(s) | 189, 471, 580, 616, 706, 767, 1068 |
| AcuI | CTGAAG | 1 cut(s) | 54 |
| AfaI | GTAC | 2 cut(s) | 376, 606 |
| AfeI | AGCGCT | 1 cut(s) | 1009 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 275, 547, 852, 993 |
| AflIII | ACRYGT | 1 cut(s) | 886 |
| AluBI | AGCT | 4 cut(s) | 136, 447, 925, 952 |
| AluI | AGCT | 4 cut(s) | 136, 447, 925, 952 |
| Alw26I | GTCTC | 1 cut(s) | 644 |
| AlwI | GGATC | 3 cut(s) | 401, 686, 867 |
| Ama87I | CYCGRG | 1 cut(s) | 937 |
| Aor51HI | AGCGCT | 1 cut(s) | 1009 |
| ApoI | RAATTY | 7 cut(s) | 189, 471, 580, 616, 706, 767, 1068 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 39, 192 |
| AspLEI | GCGC | 1 cut(s) | 1010 |
| AsuHPI | GGTGA | 6 cut(s) | 17, 233, 613, 624, 681, 1033 |
| AvaI | CYCGRG | 1 cut(s) | 937 |
| BaeGI | GKGCMC | 1 cut(s) | 646 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 76, 108 |
| BccI | CCATC | 2 cut(s) | 235, 583 |
| BcoDI | GTCTC | 1 cut(s) | 644 |
| BfaI | CTAG | 2 cut(s) | 47, 350 |
| BfmI | CTRYAG | 1 cut(s) | 920 |
| BfoI | RGCGCY | 1 cut(s) | 1011 |
| BmeT110I | CYCGRG | 1 cut(s) | 937 |
| BmsI | GCATC | 3 cut(s) | 94, 327, 727 |
| Bpu10I | CCTNAGC | 1 cut(s) | 132 |
| BpuEI | CTTGAG | 2 cut(s) | 593, 668 |
| BsaJI | CCNNGG | 1 cut(s) | 635 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 495, 525 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 275, 547, 852, 993 |
| Bse1I | ACTGG | 1 cut(s) | 1057 |
| BseDI | CCNNGG | 1 cut(s) | 635 |
| BseGI | GGATG | 3 cut(s) | 263, 342, 984 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 275, 547, 852, 993 |
| BseMII | CTCAG | 1 cut(s) | 582 |
| BseNI | ACTGG | 1 cut(s) | 1057 |
| BseRI | GAGGAG | 2 cut(s) | 652, 797 |
| BseSI | GKGCMC | 1 cut(s) | 646 |
| BsgI | GTGCAG | 1 cut(s) | 667 |
| BsiHKCI | CYCGRG | 1 cut(s) | 937 |
| BslFI | GGGAC | 2 cut(s) | 286, 1030 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 275, 547, 852, 993 |
| BsmAI | GTCTC | 1 cut(s) | 644 |
| BsmFI | GGGAC | 2 cut(s) | 286, 1030 |
| BsoBI | CYCGRG | 1 cut(s) | 937 |
| Bsp1286I | GDGCHC | 1 cut(s) | 646 |
| Bsp143I | GATC | 5 cut(s) | 393, 418, 678, 859, 931 |
| BspACI | CCGC | 1 cut(s) | 867 |
| BspCNI | CTCAG | 1 cut(s) | 583 |
| BspPI | GGATC | 3 cut(s) | 401, 686, 867 |
| BsrI | ACTGG | 1 cut(s) | 1057 |
| BssECI | CCNNGG | 1 cut(s) | 635 |
| BssMI | GATC | 5 cut(s) | 393, 418, 678, 859, 931 |
| Bst4CI | ACNGT | 2 cut(s) | 221, 464 |
| Bst6I | CTCTTC | 2 cut(s) | 828, 1043 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 346 |
| BstC8I | GCNNGC | 3 cut(s) | 347, 413, 1084 |
| BstDEI | CTNAG | 5 cut(s) | 132, 591, 778, 863, 1004 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 850, 991 |
| BstF5I | GGATG | 3 cut(s) | 263, 342, 984 |
| BstH2I | RGCGCY | 1 cut(s) | 1011 |
| BstHHI | GCGC | 1 cut(s) | 1010 |
| BstKTI | GATC | 5 cut(s) | 396, 421, 681, 862, 934 |
| BstMAI | GTCTC | 1 cut(s) | 644 |
| BstMBI | GATC | 5 cut(s) | 393, 418, 678, 859, 931 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 346 |
| BstNSI | RCATGY | 4 cut(s) | 210, 349, 415, 890 |
| BstSFI | CTRYAG | 1 cut(s) | 920 |
| BstSLI | GKGCMC | 1 cut(s) | 646 |
| BstX2I | RGATCY | 2 cut(s) | 678, 859 |
| BstYI | RGATCY | 2 cut(s) | 678, 859 |
| BtgZI | GCGATG | 1 cut(s) | 750 |
| BtsCI | GGATG | 3 cut(s) | 263, 342, 984 |
| BtsIMutI | CAGTG | 1 cut(s) | 505 |
| Cac8I | GCNNGC | 3 cut(s) | 347, 413, 1084 |
| CfoI | GCGC | 1 cut(s) | 1010 |
| Csp6I | GTAC | 2 cut(s) | 375, 605 |
| CviJI | RGCY | 8 cut(s) | 40, 136, 447, 554, 856, 925, 952, 997 |
| CviKI_1 | RGCY | 8 cut(s) | 40, 136, 447, 554, 856, 925, 952, 997 |
| CviQI | GTAC | 2 cut(s) | 375, 605 |
| DdeI | CTNAG | 5 cut(s) | 132, 591, 778, 863, 1004 |
| DpnI | GATC | 5 cut(s) | 395, 420, 680, 861, 933 |
| DpnII | GATC | 5 cut(s) | 393, 418, 678, 859, 931 |
| Eam1104I | CTCTTC | 2 cut(s) | 828, 1043 |
| EarI | CTCTTC | 2 cut(s) | 828, 1043 |
| Eco32I | GATATC | 1 cut(s) | 1090 |
| Eco47III | AGCGCT | 1 cut(s) | 1009 |
| Eco57I | CTGAAG | 1 cut(s) | 54 |
| Eco88I | CYCGRG | 1 cut(s) | 937 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 850, 991 |
| EcoRV | GATATC | 1 cut(s) | 1090 |
| EcoT22I | ATGCAT | 2 cut(s) | 109, 342 |
| FaqI | GGGAC | 2 cut(s) | 286, 1030 |
| FokI | GGATG | 3 cut(s) | 270, 349, 991 |
| FspBI | CTAG | 2 cut(s) | 47, 350 |
| GlaI | GCGC | 1 cut(s) | 1009 |
| HaeII | RGCGCY | 1 cut(s) | 1011 |
| HhaI | GCGC | 1 cut(s) | 1010 |
| Hin6I | GCGC | 1 cut(s) | 1008 |
| HinP1I | GCGC | 1 cut(s) | 1008 |
| HindIII | AAGCTT | 2 cut(s) | 134, 445 |
| HinfI | GANTC | 5 cut(s) | 164, 535, 877, 1000, 1018 |
| HphI | GGTGA | 6 cut(s) | 17, 233, 613, 624, 681, 1033 |
| Hpy166II | GTNNAC | 1 cut(s) | 118 |
| Hpy188I | TCNGA | 3 cut(s) | 487, 757, 1074 |
| Hpy188III | TCNNGA | 4 cut(s) | 467, 590, 610, 929 |
| Hpy8I | GTNNAC | 1 cut(s) | 118 |
| HpyAV | CCTTC | 3 cut(s) | 29, 400, 1060 |
| HpyCH4III | ACNGT | 2 cut(s) | 221, 464 |
| HpyCH4IV | ACGT | 2 cut(s) | 12, 664 |
| HpyCH4V | TGCA | 7 cut(s) | 107, 340, 684, 703, 873, 897, 913 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 346 |
| HpyF3I | CTNAG | 5 cut(s) | 132, 591, 778, 863, 1004 |
| HpySE526I | ACGT | 2 cut(s) | 12, 664 |
| HspAI | GCGC | 1 cut(s) | 1008 |
| Kzo9I | GATC | 5 cut(s) | 393, 418, 678, 859, 931 |
| LpnPI | CCDG | 8 cut(s) | 240, 429, 603, 639, 842, 938, 960, 1070 |
| LweI | GCATC | 3 cut(s) | 94, 327, 727 |
| MaeI | CTAG | 2 cut(s) | 47, 350 |
| MaeII | ACGT | 2 cut(s) | 12, 664 |
| MaeIII | GTNAC | 4 cut(s) | 260, 630, 742, 955 |
| MalI | GATC | 5 cut(s) | 395, 420, 680, 861, 933 |
| MboI | GATC | 5 cut(s) | 393, 418, 678, 859, 931 |
| MboII | GAAGA | 6 cut(s) | 68, 188, 205, 365, 845, 1030 |
| MflI | RGATCY | 2 cut(s) | 678, 859 |
| MhlI | GDGCHC | 1 cut(s) | 646 |
| MlyI | GAGTC | 1 cut(s) | 1012 |
| MmeI | TCCRAC | 2 cut(s) | 780, 989 |
| MnlI | CCTC | 8 cut(s) | 54, 106, 314, 630, 633, 775, 791, 1046 |
| Mph1103I | ATGCAT | 2 cut(s) | 109, 342 |
| MroXI | GAANNNNTTC | 2 cut(s) | 39, 192 |
| MslI | CAYNNNNRTG | 1 cut(s) | 626 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 346 |
| NdeII | GATC | 5 cut(s) | 393, 418, 678, 859, 931 |
| NmuCI | GTSAC | 2 cut(s) | 260, 630 |
| NsiI | ATGCAT | 2 cut(s) | 109, 342 |
| NspI | RCATGY | 4 cut(s) | 210, 349, 415, 890 |
| PaeI | GCATGC | 2 cut(s) | 349, 415 |
| PciI | ACATGT | 1 cut(s) | 886 |
| PdmI | GAANNNNTTC | 2 cut(s) | 39, 192 |
| PfeI | GAWTC | 4 cut(s) | 164, 535, 877, 1000 |
| PleI | GAGTC | 1 cut(s) | 1012 |
| PpsI | GAGTC | 1 cut(s) | 1012 |
| PscI | ACATGT | 1 cut(s) | 886 |
| PsiI | TTATAA | 1 cut(s) | 479 |
| PsuI | RGATCY | 2 cut(s) | 678, 859 |
| RsaI | GTAC | 2 cut(s) | 376, 606 |
| RsaNI | GTAC | 2 cut(s) | 375, 605 |
| RseI | CAYNNNNRTG | 1 cut(s) | 626 |
| Sau3AI | GATC | 5 cut(s) | 393, 418, 678, 859, 931 |
| SchI | GAGTC | 1 cut(s) | 1012 |
| SduI | GDGCHC | 1 cut(s) | 646 |
| SfaNI | GCATC | 3 cut(s) | 94, 327, 727 |
| SfcI | CTRYAG | 1 cut(s) | 920 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 626 |
| SmlI | CTYRAG | 2 cut(s) | 608, 647 |
| SmoI | CTYRAG | 2 cut(s) | 608, 647 |
| SphI | GCATGC | 2 cut(s) | 349, 415 |
| SsiI | CCGC | 1 cut(s) | 867 |
| SspI | AATATT | 1 cut(s) | 569 |
| SspMI | CTAG | 2 cut(s) | 47, 350 |
| TaaI | ACNGT | 2 cut(s) | 221, 464 |
| TaiI | ACGT | 2 cut(s) | 15, 667 |
| TaqI | TCGA | 2 cut(s) | 139, 1021 |
| TatI | WGTACW | 1 cut(s) | 604 |
| TfiI | GAWTC | 4 cut(s) | 164, 535, 877, 1000 |
| TscAI | CASTG | 1 cut(s) | 505 |
| TseFI | GTSAC | 2 cut(s) | 260, 630 |
| Tsp45I | GTSAC | 2 cut(s) | 260, 630 |
| TspDTI | ATGAA | 5 cut(s) | 57, 188, 629, 854, 995 |
| TspRI | CASTG | 1 cut(s) | 505 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 850, 991 |
| XapI | RAATTY | 7 cut(s) | 189, 471, 580, 616, 706, 767, 1068 |
| XceI | RCATGY | 4 cut(s) | 210, 349, 415, 890 |
| XmnI | GAANNNNTTC | 2 cut(s) | 39, 192 |
| XspI | CTAG | 2 cut(s) | 47, 350 |
| Zsp2I | ATGCAT | 2 cut(s) | 109, 342 |