TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 21 - 186 | 1.8e-55 | TIR domain |
| TIR_2 | PF13676 | 23 - 119 | 1.6e-15 | TIR domain |
| NB-ARC | PF00931 | 204 - 373 | 3e-18 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 441 - 512 | 1.7e-22 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_RPS2 | PF23247 | 676 - 772 | 2.6e-06 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_13 | PF23286 | 701 - 884 | 6.2e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1385 |
| Acc65I | GGTACC | 1 cut(s) | 3348 |
| AccB1I | GGYRCC | 1 cut(s) | 3348 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 791 |
| AccI | GTMKAC | 1 cut(s) | 122 |
| AccII | CGCG | 1 cut(s) | 2550 |
| AccIII | TCCGGA | 1 cut(s) | 496 |
| AciI | CCGC | 3 cut(s) | 415, 442, 3022 |
| AclWI | GGATC | 8 cut(s) | 347, 360, 863, 942, 1654, 2481, 2864, 3315 |
| AcoI | YGGCCR | 1 cut(s) | 112 |
| AcuI | CTGAAG | 2 cut(s) | 342, 1695 |
| AfaI | GTAC | 7 cut(s) | 1415, 1587, 1781, 2370, 2817, 3350, 3456 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 270, 791, 1129 |
| AflIII | ACRYGT | 4 cut(s) | 95, 1588, 2390, 2507 |
| AgeI | ACCGGT | 1 cut(s) | 2371 |
| AhlI | ACTAGT | 2 cut(s) | 3223, 3391 |
| AjnI | CCWGG | 3 cut(s) | 2460, 2821, 3479 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2915, 2947 |
| Alw21I | GWGCWC | 1 cut(s) | 1440 |
| Alw26I | GTCTC | 1 cut(s) | 3518 |
| AlwI | GGATC | 8 cut(s) | 347, 360, 863, 942, 1654, 2481, 2864, 3315 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2277 |
| Aor13HI | TCCGGA | 1 cut(s) | 496 |
| AoxI | GGCC | 6 cut(s) | 112, 332, 1177, 2163, 2463, 3131 |
| ApeKI | GCWGC | 5 cut(s) | 470, 2185, 2232, 2616, 3094 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 312, 344 |
| AsiGI | ACCGGT | 1 cut(s) | 2371 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 816, 1109, 1266, 2923, 3318 |
| Asp718I | GGTACC | 1 cut(s) | 3348 |
| AspLEI | GCGC | 1 cut(s) | 3369 |
| AspS9I | GGNCC | 5 cut(s) | 194, 333, 983, 2659, 3131 |
| AsuC2I | CCSGG | 4 cut(s) | 614, 987, 1548, 3075 |
| AsuHPI | GGTGA | 4 cut(s) | 98, 1527, 1562, 3434 |
| AsuNHI | GCTAGC | 1 cut(s) | 743 |
| AvaII | GGWCC | 3 cut(s) | 194, 983, 2659 |
| AxyI | CCTNAGG | 1 cut(s) | 1128 |
| BalI | TGGCCA | 1 cut(s) | 114 |
| BamHI | GGATCC | 1 cut(s) | 352 |
| BanI | GGYRCC | 1 cut(s) | 3348 |
| BanII | GRGCYC | 1 cut(s) | 2541 |
| BauI | CACGAG | 1 cut(s) | 606 |
| BbsI | GAAGAC | 2 cut(s) | 137, 2364 |
| Bbv12I | GWGCWC | 1 cut(s) | 1440 |
| BbvCI | CCTCAGC | 1 cut(s) | 390 |
| BbvI | GCAGC | 5 cut(s) | 482, 2197, 2244, 2603, 3081 |
| BccI | CCATC | 8 cut(s) | 441, 480, 785, 1189, 1813, 2743, 2957, 3548 |
| BciT130I | CCWGG | 3 cut(s) | 2462, 2823, 3481 |
| BciVI | GTATCC | 2 cut(s) | 597, 3477 |
| BclI | TGATCA | 2 cut(s) | 2779, 3403 |
| BcnI | CCSGG | 4 cut(s) | 614, 987, 1548, 3075 |
| BcoDI | GTCTC | 1 cut(s) | 3518 |
| BcuI | ACTAGT | 2 cut(s) | 3223, 3391 |
| BfaI | CTAG | 6 cut(s) | 474, 744, 1011, 3017, 3224, 3392 |
| BfmI | CTRYAG | 3 cut(s) | 591, 2255, 3095 |
| BfuI | GTATCC | 2 cut(s) | 597, 3477 |
| BglII | AGATCT | 2 cut(s) | 540, 3271 |
| BisI | GCNGC | 5 cut(s) | 471, 2186, 2233, 2617, 3095 |
| BlpI | GCTNAGC | 1 cut(s) | 854 |
| BlsI | GCNGC | 5 cut(s) | 472, 2187, 2234, 2618, 3096 |
| Bme1390I | CCNGG | 7 cut(s) | 614, 987, 1548, 2462, 2823, 3075, 3481 |
| Bme18I | GGWCC | 3 cut(s) | 194, 983, 2659 |
| BmgT120I | GGNCC | 5 cut(s) | 194, 333, 983, 2659, 3131 |
| BmiI | GGNNCC | 6 cut(s) | 354, 1769, 2170, 3132, 3350, 3376 |
| BmrFI | CCNGG | 7 cut(s) | 614, 987, 1548, 2462, 2823, 3075, 3481 |
| BmrI | ACTGGG | 2 cut(s) | 1412, 3136 |
| BmsI | GCATC | 7 cut(s) | 269, 409, 1234, 2244, 2762, 2869, 3033 |
| BmtI | GCTAGC | 1 cut(s) | 747 |
| BmuI | ACTGGG | 2 cut(s) | 1412, 3136 |
| BpiI | GAAGAC | 2 cut(s) | 137, 2364 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 442, 474, 527, 559 |
| BpmI | CTGGAG | 1 cut(s) | 2162 |
| Bpu10I | CCTNAGC | 2 cut(s) | 390, 2382 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 854 |
| BpuEI | CTTGAG | 5 cut(s) | 94, 320, 926, 2285, 2705 |
| BpuMI | CCSGG | 4 cut(s) | 614, 987, 1548, 3075 |
| Bsa29I | ATCGAT | 1 cut(s) | 733 |
| BsaAI | YACGTR | 2 cut(s) | 98, 2339 |
| BsaBI | GATNNNNATC | 3 cut(s) | 168, 933, 1020 |
| BsaJI | CCNNGG | 6 cut(s) | 2172, 2460, 3074, 3134, 3370, 3378 |
| BsaWI | WCCGGW | 3 cut(s) | 496, 2371, 3234 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 270, 791, 1129 |
| Bse118I | RCCGGY | 1 cut(s) | 2371 |
| Bse1I | ACTGG | 6 cut(s) | 115, 603, 1418, 2112, 2808, 3131 |
| Bse21I | CCTNAGG | 1 cut(s) | 1128 |
| Bse3DI | GCAATG | 3 cut(s) | 402, 865, 1347 |
| Bse8I | GATNNNNATC | 3 cut(s) | 168, 933, 1020 |
| BseAI | TCCGGA | 1 cut(s) | 496 |
| BseBI | CCWGG | 3 cut(s) | 2462, 2823, 3481 |
| BseCI | ATCGAT | 1 cut(s) | 733 |
| BseDI | CCNNGG | 6 cut(s) | 2172, 2460, 3074, 3134, 3370, 3378 |
| BseJI | GATNNNNATC | 3 cut(s) | 168, 933, 1020 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 270, 791, 1129 |
| BseMI | GCAATG | 3 cut(s) | 402, 865, 1347 |
| BseMII | CTCAG | 8 cut(s) | 381, 845, 1714, 1852, 1965, 2373, 2865, 3529 |
| BseNI | ACTGG | 6 cut(s) | 115, 603, 1418, 2112, 2808, 3131 |
| BseRI | GAGGAG | 3 cut(s) | 278, 551, 858 |
| BseXI | GCAGC | 5 cut(s) | 482, 2197, 2244, 2603, 3081 |
| Bsh1236I | CGCG | 1 cut(s) | 2550 |
| BshFI | GGCC | 6 cut(s) | 114, 334, 1179, 2165, 2465, 3133 |
| BshNI | GGYRCC | 1 cut(s) | 3348 |
| BshTI | ACCGGT | 1 cut(s) | 2371 |
| BshVI | ATCGAT | 1 cut(s) | 733 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1440 |
| BsiSI | CCGG | 8 cut(s) | 497, 613, 986, 1547, 2166, 2372, 3074, 3235 |
| BslFI | GGGAC | 2 cut(s) | 1435, 2420 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 270, 791, 1129 |
| BsmAI | GTCTC | 1 cut(s) | 3518 |
| BsmFI | GGGAC | 2 cut(s) | 1435, 2420 |
| BsmI | GAATGC | 1 cut(s) | 2711 |
| BsnI | GGCC | 6 cut(s) | 114, 334, 1179, 2165, 2465, 3133 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1440, 2541 |
| Bsp13I | TCCGGA | 1 cut(s) | 496 |
| Bsp1407I | TGTACA | 1 cut(s) | 1585 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 854 |
| Bsp19I | CCATGG | 1 cut(s) | 2172 |
| BspACI | CCGC | 3 cut(s) | 415, 442, 3022 |
| BspANI | GGCC | 6 cut(s) | 114, 334, 1179, 2165, 2465, 3133 |
| BspCNI | CTCAG | 8 cut(s) | 382, 846, 1713, 1851, 1964, 2374, 2866, 3528 |
| BspDI | ATCGAT | 1 cut(s) | 733 |
| BspEI | TCCGGA | 1 cut(s) | 496 |
| BspFNI | CGCG | 1 cut(s) | 2550 |
| BspHI | TCATGA | 3 cut(s) | 2011, 3052, 3310 |
| BspLI | GGNNCC | 6 cut(s) | 354, 1769, 2170, 3132, 3350, 3376 |
| BspMAI | CTGCAG | 2 cut(s) | 2259, 3099 |
| BspOI | GCTAGC | 1 cut(s) | 747 |
| BspPI | GGATC | 8 cut(s) | 347, 360, 863, 942, 1654, 2481, 2864, 3315 |
| BspQI | GCTCTTC | 1 cut(s) | 3141 |
| BspT107I | GGYRCC | 1 cut(s) | 3348 |
| BsrDI | GCAATG | 3 cut(s) | 402, 865, 1347 |
| BsrFI | RCCGGY | 1 cut(s) | 2371 |
| BsrGI | TGTACA | 1 cut(s) | 1585 |
| BsrI | ACTGG | 6 cut(s) | 115, 603, 1418, 2112, 2808, 3131 |
| BssAI | RCCGGY | 1 cut(s) | 2371 |
| BssECI | CCNNGG | 6 cut(s) | 2172, 2460, 3074, 3134, 3370, 3378 |
| BssNAI | GTATAC | 1 cut(s) | 123 |
| BssSI | CACGAG | 1 cut(s) | 606 |
| BssT1I | CCWWGG | 3 cut(s) | 2172, 3370, 3378 |
| Bst1107I | GTATAC | 1 cut(s) | 123 |
| Bst2BI | CACGAG | 1 cut(s) | 606 |
| Bst2UI | CCWGG | 3 cut(s) | 2462, 2823, 3481 |
| Bst4CI | ACNGT | 3 cut(s) | 700, 1875, 3138 |
| Bst6I | CTCTTC | 5 cut(s) | 180, 822, 1227, 1650, 3141 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2606 |
| BstAUI | TGTACA | 1 cut(s) | 1585 |
| BstBAI | YACGTR | 2 cut(s) | 98, 2339 |
| BstC8I | GCNNGC | 4 cut(s) | 7, 745, 1158, 1726 |
| BstDSI | CCRYGG | 2 cut(s) | 2172, 3134 |
| BstFNI | CGCG | 1 cut(s) | 2550 |
| BstHHI | GCGC | 1 cut(s) | 3369 |
| BstMAI | GTCTC | 1 cut(s) | 3518 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1486, 2606, 2942, 3130 |
| BstNI | CCWGG | 3 cut(s) | 2462, 2823, 3481 |
| BstNSI | RCATGY | 2 cut(s) | 1592, 2511 |
| BstSCI | CCNGG | 7 cut(s) | 612, 985, 1546, 2460, 2821, 3073, 3479 |
| BstSFI | CTRYAG | 3 cut(s) | 591, 2255, 3095 |
| BstUI | CGCG | 1 cut(s) | 2550 |
| BstV1I | GCAGC | 5 cut(s) | 482, 2197, 2244, 2603, 3081 |
| BstV2I | GAAGAC | 2 cut(s) | 137, 2364 |
| BstX2I | RGATCY | 5 cut(s) | 352, 540, 1659, 2473, 3271 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 54 |
| BstYI | RGATCY | 5 cut(s) | 352, 540, 1659, 2473, 3271 |
| BstZ17I | GTATAC | 1 cut(s) | 123 |
| Bsu15I | ATCGAT | 1 cut(s) | 733 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1128 |
| BsuI | GTATCC | 2 cut(s) | 597, 3477 |
| BsuRI | GGCC | 6 cut(s) | 114, 334, 1179, 2165, 2465, 3133 |
| BsuTUI | ATCGAT | 1 cut(s) | 733 |
| BtgI | CCRYGG | 2 cut(s) | 2172, 3134 |
| BtsI | GCAGTG | 1 cut(s) | 1440 |
| BtsIMutI | CAGTG | 6 cut(s) | 1440, 2058, 2105, 2815, 2920, 3124 |
| Cac8I | GCNNGC | 4 cut(s) | 7, 745, 1158, 1726 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2277 |
| CciI | TCATGA | 3 cut(s) | 2011, 3052, 3310 |
| CfoI | GCGC | 1 cut(s) | 3369 |
| Cfr10I | RCCGGY | 1 cut(s) | 2371 |
| Cfr13I | GGNCC | 5 cut(s) | 194, 333, 983, 2659, 3131 |
| ClaI | ATCGAT | 1 cut(s) | 733 |
| CseI | GACGC | 1 cut(s) | 1514 |
| Csp6I | GTAC | 7 cut(s) | 1414, 1586, 1780, 2369, 2816, 3349, 3455 |
| CspAI | ACCGGT | 1 cut(s) | 2371 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2074, 2109, 3183, 3218 |
| CviQI | GTAC | 7 cut(s) | 1414, 1586, 1780, 2369, 2816, 3349, 3455 |
| EaeI | YGGCCR | 1 cut(s) | 112 |
| Eam1104I | CTCTTC | 5 cut(s) | 180, 822, 1227, 1650, 3141 |
| EarI | CTCTTC | 5 cut(s) | 180, 822, 1227, 1650, 3141 |
| Eco130I | CCWWGG | 3 cut(s) | 2172, 3370, 3378 |
| Eco147I | AGGCCT | 1 cut(s) | 1179 |
| Eco24I | GRGCYC | 1 cut(s) | 2541 |
| Eco47I | GGWCC | 3 cut(s) | 194, 983, 2659 |
| Eco57I | CTGAAG | 2 cut(s) | 342, 1695 |
| Eco81I | CCTNAGG | 1 cut(s) | 1128 |
| EcoRI | GAATTC | 4 cut(s) | 1073, 1105, 1266, 2923 |
| EcoRII | CCWGG | 3 cut(s) | 2460, 2821, 3479 |
| EcoT14I | CCWWGG | 3 cut(s) | 2172, 3370, 3378 |
| EcoT22I | ATGCAT | 5 cut(s) | 262, 402, 624, 1249, 1491 |
| EcoT38I | GRGCYC | 1 cut(s) | 2541 |
| ErhI | CCWWGG | 3 cut(s) | 2172, 3370, 3378 |
| FaqI | GGGAC | 2 cut(s) | 1435, 2420 |
| FbaI | TGATCA | 2 cut(s) | 2779, 3403 |
| FblI | GTMKAC | 1 cut(s) | 122 |
| Fnu4HI | GCNGC | 5 cut(s) | 471, 2186, 2233, 2617, 3095 |
| FriOI | GRGCYC | 1 cut(s) | 2541 |
| Fsp4HI | GCNGC | 5 cut(s) | 471, 2186, 2233, 2617, 3095 |
| FspBI | CTAG | 6 cut(s) | 474, 744, 1011, 3017, 3224, 3392 |
| GlaI | GCGC | 1 cut(s) | 3368 |
| GluI | GCNGC | 5 cut(s) | 471, 2186, 2233, 2617, 3095 |
| GsuI | CTGGAG | 1 cut(s) | 2162 |
| HaeIII | GGCC | 6 cut(s) | 114, 334, 1179, 2165, 2465, 3133 |
| HapII | CCGG | 8 cut(s) | 497, 613, 986, 1547, 2166, 2372, 3074, 3235 |
| HgaI | GACGC | 1 cut(s) | 1514 |
| HhaI | GCGC | 1 cut(s) | 3369 |
| Hin6I | GCGC | 1 cut(s) | 3367 |
| HinP1I | GCGC | 1 cut(s) | 3367 |
| HincII | GTYRAC | 2 cut(s) | 2307, 2527 |
| HindII | GTYRAC | 2 cut(s) | 2307, 2527 |
| HindIII | AAGCTT | 2 cut(s) | 1083, 2036 |
| HpaI | GTTAAC | 1 cut(s) | 2527 |
| HpaII | CCGG | 8 cut(s) | 497, 613, 986, 1547, 2166, 2372, 3074, 3235 |
| HphI | GGTGA | 4 cut(s) | 98, 1527, 1562, 3434 |
| Hpy166II | GTNNAC | 6 cut(s) | 123, 1376, 1553, 2307, 2457, 2527 |
| Hpy8I | GTNNAC | 6 cut(s) | 123, 1376, 1553, 2307, 2457, 2527 |
| HpyAV | CCTTC | 9 cut(s) | 163, 366, 1120, 1190, 1324, 1857, 2510, 3195, 3443 |
| HpyCH4III | ACNGT | 3 cut(s) | 700, 1875, 3138 |
| HpyCH4IV | ACGT | 6 cut(s) | 97, 1372, 1864, 2338, 2392, 3337 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1486, 2606, 2942, 3130 |
| HpySE526I | ACGT | 6 cut(s) | 97, 1372, 1864, 2338, 2392, 3337 |
| HspAI | GCGC | 1 cut(s) | 3367 |
| Kpn2I | TCCGGA | 1 cut(s) | 496 |
| KpnI | GGTACC | 1 cut(s) | 3352 |
| Ksp22I | TGATCA | 2 cut(s) | 2779, 3403 |
| KspAI | GTTAAC | 1 cut(s) | 2527 |
| LguI | GCTCTTC | 1 cut(s) | 3141 |
| LmnI | GCTCC | 4 cut(s) | 1773, 2369, 2691, 3374 |
| Lsp1109I | GCAGC | 5 cut(s) | 482, 2197, 2244, 2603, 3081 |
| LweI | GCATC | 7 cut(s) | 269, 409, 1234, 2244, 2762, 2869, 3033 |
| MaeI | CTAG | 6 cut(s) | 474, 744, 1011, 3017, 3224, 3392 |
| MaeII | ACGT | 6 cut(s) | 97, 1372, 1864, 2338, 2392, 3337 |
| MaeIII | GTNAC | 3 cut(s) | 59, 1406, 3385 |
| MfeI | CAATTG | 1 cut(s) | 723 |
| MflI | RGATCY | 5 cut(s) | 352, 540, 1659, 2473, 3271 |
| MhlI | GDGCHC | 2 cut(s) | 1440, 2541 |
| MlsI | TGGCCA | 1 cut(s) | 114 |
| MluNI | TGGCCA | 1 cut(s) | 114 |
| MlyI | GAGTC | 3 cut(s) | 230, 2409, 2813 |
| MmeI | TCCRAC | 8 cut(s) | 643, 1082, 1714, 2002, 2528, 2612, 2888, 3244 |
| Mox20I | TGGCCA | 1 cut(s) | 114 |
| Mph1103I | ATGCAT | 5 cut(s) | 262, 402, 624, 1249, 1491 |
| MroI | TCCGGA | 1 cut(s) | 496 |
| MroXI | GAANNNNTTC | 5 cut(s) | 816, 1109, 1266, 2923, 3318 |
| MscI | TGGCCA | 1 cut(s) | 114 |
| MslI | CAYNNNNRTG | 3 cut(s) | 405, 1578, 1668 |
| Msp20I | TGGCCA | 1 cut(s) | 114 |
| MspI | CCGG | 8 cut(s) | 497, 613, 986, 1547, 2166, 2372, 3074, 3235 |
| MspR9I | CCNGG | 7 cut(s) | 614, 987, 1548, 2462, 2823, 3075, 3481 |
| MunI | CAATTG | 1 cut(s) | 723 |
| Mva1269I | GAATGC | 1 cut(s) | 2711 |
| MvaI | CCWGG | 3 cut(s) | 2462, 2823, 3481 |
| MvnI | CGCG | 1 cut(s) | 2550 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1486, 2606, 2942, 3130 |
| NciI | CCSGG | 4 cut(s) | 614, 987, 1548, 3075 |
| NcoI | CCATGG | 1 cut(s) | 2172 |
| NheI | GCTAGC | 1 cut(s) | 743 |
| NlaIV | GGNNCC | 6 cut(s) | 354, 1769, 2170, 3132, 3350, 3376 |
| NmuCI | GTSAC | 1 cut(s) | 1406 |
| NsiI | ATGCAT | 5 cut(s) | 262, 402, 624, 1249, 1491 |
| NspI | RCATGY | 2 cut(s) | 1592, 2511 |
| PagI | TCATGA | 3 cut(s) | 2011, 3052, 3310 |
| PceI | AGGCCT | 1 cut(s) | 1179 |
| PciI | ACATGT | 2 cut(s) | 1588, 2507 |
| PciSI | GCTCTTC | 1 cut(s) | 3141 |
| PctI | GAATGC | 1 cut(s) | 2711 |
| PdmI | GAANNNNTTC | 5 cut(s) | 816, 1109, 1266, 2923, 3318 |
| PfeI | GAWTC | 9 cut(s) | 311, 509, 602, 1532, 1696, 1796, 2008, 2015, 2437 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 791 |
| PfoI | TCCNGGA | 2 cut(s) | 612, 2821 |
| PinAI | ACCGGT | 1 cut(s) | 2371 |
| PkrI | GCNGC | 5 cut(s) | 472, 2187, 2234, 2618, 3096 |
| PleI | GAGTC | 3 cut(s) | 229, 2408, 2812 |
| PpsI | GAGTC | 3 cut(s) | 229, 2408, 2812 |
| Ppu21I | YACGTR | 2 cut(s) | 98, 2339 |
| PscI | ACATGT | 2 cut(s) | 1588, 2507 |
| PsiI | TTATAA | 1 cut(s) | 1385 |
| Psp6I | CCWGG | 3 cut(s) | 2460, 2821, 3479 |
| PspGI | CCWGG | 3 cut(s) | 2460, 2821, 3479 |
| PspN4I | GGNNCC | 6 cut(s) | 354, 1769, 2170, 3132, 3350, 3376 |
| PspPI | GGNCC | 5 cut(s) | 194, 333, 983, 2659, 3131 |
| PstI | CTGCAG | 2 cut(s) | 2259, 3099 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2277 |
| PsuI | RGATCY | 5 cut(s) | 352, 540, 1659, 2473, 3271 |
| RsaI | GTAC | 7 cut(s) | 1415, 1587, 1781, 2370, 2817, 3350, 3456 |
| RsaNI | GTAC | 7 cut(s) | 1414, 1586, 1780, 2369, 2816, 3349, 3455 |
| RseI | CAYNNNNRTG | 3 cut(s) | 405, 1578, 1668 |
| SapI | GCTCTTC | 1 cut(s) | 3141 |
| SatI | GCNGC | 5 cut(s) | 471, 2186, 2233, 2617, 3095 |
| Sau96I | GGNCC | 5 cut(s) | 194, 333, 983, 2659, 3131 |
| SchI | GAGTC | 3 cut(s) | 230, 2409, 2813 |
| ScrFI | CCNGG | 7 cut(s) | 614, 987, 1548, 2462, 2823, 3075, 3481 |
| SduI | GDGCHC | 2 cut(s) | 1440, 2541 |
| SfaNI | GCATC | 7 cut(s) | 269, 409, 1234, 2244, 2762, 2869, 3033 |
| SfcI | CTRYAG | 3 cut(s) | 591, 2255, 3095 |
| SinI | GGWCC | 3 cut(s) | 194, 983, 2659 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 405, 1578, 1668 |
| SmlI | CTYRAG | 5 cut(s) | 73, 299, 941, 2264, 2684 |
| SmoI | CTYRAG | 5 cut(s) | 73, 299, 941, 2264, 2684 |
| SpeI | ACTAGT | 2 cut(s) | 3223, 3391 |
| SseBI | AGGCCT | 1 cut(s) | 1179 |
| SsiI | CCGC | 3 cut(s) | 415, 442, 3022 |
| SspI | AATATT | 2 cut(s) | 529, 2833 |
| SspMI | CTAG | 6 cut(s) | 474, 744, 1011, 3017, 3224, 3392 |
| StuI | AGGCCT | 1 cut(s) | 1179 |
| StyD4I | CCNGG | 7 cut(s) | 612, 985, 1546, 2460, 2821, 3073, 3479 |
| StyI | CCWWGG | 3 cut(s) | 2172, 3370, 3378 |
| TaaI | ACNGT | 3 cut(s) | 700, 1875, 3138 |
| TaiI | ACGT | 6 cut(s) | 100, 1375, 1867, 2341, 2395, 3340 |
| TaqII | GACCGA | 1 cut(s) | 1137 |
| TatI | WGTACW | 2 cut(s) | 1585, 2815 |
| TfiI | GAWTC | 9 cut(s) | 311, 509, 602, 1532, 1696, 1796, 2008, 2015, 2437 |
| TscAI | CASTG | 6 cut(s) | 1440, 2058, 2112, 2815, 2920, 3131 |
| TseFI | GTSAC | 1 cut(s) | 1406 |
| TseI | GCWGC | 5 cut(s) | 470, 2185, 2232, 2616, 3094 |
| Tsp45I | GTSAC | 1 cut(s) | 1406 |
| TspGWI | ACGGA | 1 cut(s) | 2356 |
| TspRI | CASTG | 6 cut(s) | 1440, 2058, 2112, 2815, 2920, 3131 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 791 |
| VpaK11BI | GGWCC | 3 cut(s) | 194, 983, 2659 |
| XceI | RCATGY | 2 cut(s) | 1592, 2511 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 274 |
| XmiI | GTMKAC | 1 cut(s) | 122 |
| XmnI | GAANNNNTTC | 5 cut(s) | 816, 1109, 1266, 2923, 3318 |
| XspI | CTAG | 6 cut(s) | 474, 744, 1011, 3017, 3224, 3392 |
| Zsp2I | ATGCAT | 5 cut(s) | 262, 402, 624, 1249, 1491 |