TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 24 - 190 | 9.2e-53 | TIR domain |
| TIR_2 | PF13676 | 26 - 121 | 1.6e-14 | TIR domain |
| NB-ARC | PF00931 | 203 - 375 | 9.4e-20 | NB-ARC domain |
| ATPase_2 | PF01637 | 205 - 320 | 3.3e-07 | ATPase domain predominantly from Archaea |
| WHD_ROQ1 | PF23282 | 444 - 513 | 1.6e-21 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 610 - 728 | 5.4e-06 | Leucine-rich repeat region |
| LRR_Zer-1 | PF25013 | 668 - 794 | 1.4e-06 | Zer-1-like, Leucine-rich repeats |
| LRR_13 | PF23286 | 718 - 804 | 5.3e-12 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2909 |
| Acc36I | ACCTGC | 1 cut(s) | 2909 |
| AccI | GTMKAC | 1 cut(s) | 2689 |
| AccII | CGCG | 2 cut(s) | 106, 2542 |
| AcoI | YGGCCR | 4 cut(s) | 2077, 2404, 2576, 2733 |
| AcsI | RAATTY | 8 cut(s) | 1710, 1992, 2526, 2534, 2589, 2607, 2852, 2973 |
| AcuI | CTGAAG | 3 cut(s) | 73, 1815, 2868 |
| AfaI | GTAC | 4 cut(s) | 131, 1398, 2346, 2862 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 23, 2075, 2771 |
| AflII | CTTAAG | 1 cut(s) | 2195 |
| AgeI | ACCGGT | 1 cut(s) | 2461 |
| AhlI | ACTAGT | 1 cut(s) | 2692 |
| AjnI | CCWGG | 4 cut(s) | 351, 387, 988, 2241 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 266, 298, 2850, 2882 |
| AleI | CACNNNNGTG | 1 cut(s) | 1899 |
| Alw21I | GWGCWC | 2 cut(s) | 1098, 2127 |
| Alw26I | GTCTC | 3 cut(s) | 2087, 2319, 2659 |
| ApaI | GGGCCC | 1 cut(s) | 1908 |
| ApeKI | GCWGC | 7 cut(s) | 458, 753, 2187, 2325, 2400, 2409, 2658 |
| ApoI | RAATTY | 8 cut(s) | 1710, 1992, 2526, 2534, 2589, 2607, 2852, 2973 |
| AseI | ATTAAT | 1 cut(s) | 3125 |
| AsiGI | ACCGGT | 1 cut(s) | 2461 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1341, 1524, 2451 |
| AspLEI | GCGC | 2 cut(s) | 108, 2400 |
| AspS9I | GGNCC | 7 cut(s) | 385, 937, 986, 1867, 1904, 1905, 2503 |
| AsuHPI | GGTGA | 6 cut(s) | 401, 407, 1382, 1661, 2754, 2890 |
| AsuII | TTCGAA | 1 cut(s) | 272 |
| AvaII | GGWCC | 4 cut(s) | 937, 986, 1867, 2503 |
| BaeGI | GKGCMC | 1 cut(s) | 1908 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2328, 2361 |
| BalI | TGGCCA | 2 cut(s) | 2578, 2735 |
| BanII | GRGCYC | 3 cut(s) | 1098, 1908, 2127 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 359, 391 |
| BauI | CACGAG | 1 cut(s) | 612 |
| BbsI | GAAGAC | 3 cut(s) | 39, 1752, 3021 |
| Bbv12I | GWGCWC | 2 cut(s) | 1098, 2127 |
| BbvI | GCAGC | 7 cut(s) | 470, 740, 2174, 2312, 2387, 2396, 2645 |
| BccI | CCATC | 5 cut(s) | 1130, 1543, 2270, 2356, 2782 |
| BceAI | ACGGC | 4 cut(s) | 2064, 2411, 2826, 2889 |
| BciT130I | CCWGG | 4 cut(s) | 353, 389, 990, 2243 |
| BciVI | GTATCC | 1 cut(s) | 94 |
| BcoDI | GTCTC | 3 cut(s) | 2087, 2319, 2659 |
| BcuI | ACTAGT | 1 cut(s) | 2692 |
| BfaI | CTAG | 3 cut(s) | 1275, 1769, 2693 |
| BfoI | RGCGCY | 1 cut(s) | 2401 |
| BfrI | CTTAAG | 1 cut(s) | 2195 |
| BfuAI | ACCTGC | 1 cut(s) | 2909 |
| BfuI | GTATCC | 1 cut(s) | 94 |
| BglII | AGATCT | 2 cut(s) | 300, 1213 |
| Bme1390I | CCNGG | 4 cut(s) | 353, 389, 990, 2243 |
| Bme18I | GGWCC | 4 cut(s) | 937, 986, 1867, 2503 |
| BmgT120I | GGNCC | 7 cut(s) | 385, 937, 986, 1867, 1904, 1905, 2503 |
| BmiI | GGNNCC | 4 cut(s) | 28, 1868, 1906, 2776 |
| BmrFI | CCNGG | 4 cut(s) | 353, 389, 990, 2243 |
| BmsI | GCATC | 5 cut(s) | 275, 388, 596, 1237, 1479 |
| BpiI | GAAGAC | 3 cut(s) | 39, 1752, 3021 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 33 |
| BpmI | CTGGAG | 2 cut(s) | 987, 2111 |
| Bpu10I | CCTNAGC | 1 cut(s) | 413 |
| Bpu14I | TTCGAA | 1 cut(s) | 272 |
| BpuEI | CTTGAG | 3 cut(s) | 1619, 2671, 3248 |
| BsaJI | CCNNGG | 1 cut(s) | 3087 |
| BsaWI | WCCGGW | 1 cut(s) | 2461 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 786, 816, 3133, 3163 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 23, 2075, 2771 |
| Bse118I | RCCGGY | 1 cut(s) | 2461 |
| Bse1I | ACTGG | 3 cut(s) | 1849, 2302, 2897 |
| Bse3DI | GCAATG | 1 cut(s) | 2378 |
| BseBI | CCWGG | 4 cut(s) | 353, 389, 990, 2243 |
| BseDI | CCNNGG | 1 cut(s) | 3087 |
| BseGI | GGATG | 9 cut(s) | 292, 874, 1141, 1240, 1494, 1588, 2065, 2917, 2944 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 23, 2075, 2771 |
| BseMI | GCAATG | 1 cut(s) | 2378 |
| BseMII | CTCAG | 9 cut(s) | 74, 447, 896, 1447, 1848, 2122, 2280, 2295, 2993 |
| BseNI | ACTGG | 3 cut(s) | 1849, 2302, 2897 |
| BseRI | GAGGAG | 2 cut(s) | 201, 1659 |
| BseSI | GKGCMC | 1 cut(s) | 1908 |
| BseX3I | CGGCCG | 1 cut(s) | 2404 |
| BseXI | GCAGC | 7 cut(s) | 470, 740, 2174, 2312, 2387, 2396, 2645 |
| BseYI | CCCAGC | 2 cut(s) | 1759, 3240 |
| BsgI | GTGCAG | 1 cut(s) | 1877 |
| Bsh1236I | CGCG | 2 cut(s) | 106, 2542 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2407 |
| BshTI | ACCGGT | 1 cut(s) | 2461 |
| BsiEI | CGRYCG | 1 cut(s) | 2407 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1098, 2127 |
| BsiSI | CCGG | 1 cut(s) | 2462 |
| BslFI | GGGAC | 3 cut(s) | 1522, 1566, 3008 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 23, 2075, 2771 |
| BsmAI | GTCTC | 3 cut(s) | 2087, 2319, 2659 |
| BsmBI | CGTCTC | 1 cut(s) | 2087 |
| BsmFI | GGGAC | 3 cut(s) | 1522, 1566, 3008 |
| Bsp119I | TTCGAA | 1 cut(s) | 272 |
| Bsp120I | GGGCCC | 1 cut(s) | 1904 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1098, 1908, 2127 |
| Bsp1407I | TGTACA | 1 cut(s) | 129 |
| Bsp19I | CCATGG | 1 cut(s) | 3087 |
| BspCNI | CTCAG | 9 cut(s) | 75, 446, 895, 1446, 1849, 2121, 2279, 2294, 2992 |
| BspFNI | CGCG | 2 cut(s) | 106, 2542 |
| BspHI | TCATGA | 1 cut(s) | 1081 |
| BspLI | GGNNCC | 4 cut(s) | 28, 1868, 1906, 2776 |
| BspMI | ACCTGC | 1 cut(s) | 2909 |
| BspQI | GCTCTTC | 1 cut(s) | 1103 |
| BspT104I | TTCGAA | 1 cut(s) | 272 |
| BspTI | CTTAAG | 1 cut(s) | 2195 |
| BsrDI | GCAATG | 1 cut(s) | 2378 |
| BsrFI | RCCGGY | 1 cut(s) | 2461 |
| BsrGI | TGTACA | 1 cut(s) | 129 |
| BsrI | ACTGG | 3 cut(s) | 1849, 2302, 2897 |
| BssAI | RCCGGY | 1 cut(s) | 2461 |
| BssECI | CCNNGG | 1 cut(s) | 3087 |
| BssSI | CACGAG | 1 cut(s) | 612 |
| BssT1I | CCWWGG | 1 cut(s) | 3087 |
| Bst2BI | CACGAG | 1 cut(s) | 612 |
| Bst2UI | CCWGG | 4 cut(s) | 353, 389, 990, 2243 |
| Bst4CI | ACNGT | 6 cut(s) | 1045, 1655, 1976, 2766, 2865, 3133 |
| Bst6I | CTCTTC | 6 cut(s) | 37, 43, 1103, 1791, 1818, 2735 |
| BstAFI | CTTAAG | 1 cut(s) | 2195 |
| BstAUI | TGTACA | 1 cut(s) | 129 |
| BstBI | TTCGAA | 1 cut(s) | 272 |
| BstC8I | GCNNGC | 1 cut(s) | 2513 |
| BstDSI | CCRYGG | 1 cut(s) | 3087 |
| BstEII | GGTNACC | 1 cut(s) | 1649 |
| BstF5I | GGATG | 9 cut(s) | 292, 874, 1141, 1240, 1494, 1588, 2065, 2917, 2944 |
| BstFNI | CGCG | 2 cut(s) | 106, 2542 |
| BstH2I | RGCGCY | 1 cut(s) | 2401 |
| BstHHI | GCGC | 2 cut(s) | 108, 2400 |
| BstMAI | GTCTC | 3 cut(s) | 2087, 2319, 2659 |
| BstMCI | CGRYCG | 1 cut(s) | 2407 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 263, 2406, 2409, 2412 |
| BstNI | CCWGG | 4 cut(s) | 353, 389, 990, 2243 |
| BstNSI | RCATGY | 2 cut(s) | 1359, 2877 |
| BstPI | GGTNACC | 1 cut(s) | 1649 |
| BstSCI | CCNGG | 4 cut(s) | 351, 387, 988, 2241 |
| BstSLI | GKGCMC | 1 cut(s) | 1908 |
| BstUI | CGCG | 2 cut(s) | 106, 2542 |
| BstV1I | GCAGC | 7 cut(s) | 470, 740, 2174, 2312, 2387, 2396, 2645 |
| BstV2I | GAAGAC | 3 cut(s) | 39, 1752, 3021 |
| BstX2I | RGATCY | 7 cut(s) | 300, 358, 1213, 2032, 2173, 2245, 2926 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3094 |
| BstYI | RGATCY | 7 cut(s) | 300, 358, 1213, 2032, 2173, 2245, 2926 |
| BstZI | CGGCCG | 1 cut(s) | 2404 |
| BsuI | GTATCC | 1 cut(s) | 94 |
| BtgI | CCRYGG | 1 cut(s) | 3087 |
| BtsCI | GGATG | 9 cut(s) | 292, 874, 1141, 1240, 1494, 1588, 2065, 2917, 2944 |
| BtsI | GCAGTG | 1 cut(s) | 2256 |
| BtsIMutI | CAGTG | 3 cut(s) | 1972, 2256, 2295 |
| BveI | ACCTGC | 1 cut(s) | 2909 |
| Cac8I | GCNNGC | 1 cut(s) | 2513 |
| CciI | TCATGA | 1 cut(s) | 1081 |
| CciNI | GCGGCCGC | 1 cut(s) | 2404 |
| CfoI | GCGC | 2 cut(s) | 108, 2400 |
| Cfr10I | RCCGGY | 1 cut(s) | 2461 |
| Cfr13I | GGNCC | 7 cut(s) | 385, 937, 986, 1867, 1904, 1905, 2503 |
| CsiI | ACCWGGT | 1 cut(s) | 351 |
| Csp6I | GTAC | 4 cut(s) | 130, 1397, 2345, 2861 |
| CspAI | ACCGGT | 1 cut(s) | 2461 |
| CviQI | GTAC | 4 cut(s) | 130, 1397, 2345, 2861 |
| DraI | TTTAAA | 2 cut(s) | 1366, 1717 |
| EaeI | YGGCCR | 4 cut(s) | 2077, 2404, 2576, 2733 |
| EagI | CGGCCG | 1 cut(s) | 2404 |
| Eam1104I | CTCTTC | 6 cut(s) | 37, 43, 1103, 1791, 1818, 2735 |
| EarI | CTCTTC | 6 cut(s) | 37, 43, 1103, 1791, 1818, 2735 |
| EciI | GGCGGA | 1 cut(s) | 3153 |
| Ecl136II | GAGCTC | 2 cut(s) | 1096, 2125 |
| EclXI | CGGCCG | 1 cut(s) | 2404 |
| Eco130I | CCWWGG | 1 cut(s) | 3087 |
| Eco147I | AGGCCT | 1 cut(s) | 1454 |
| Eco24I | GRGCYC | 3 cut(s) | 1098, 1908, 2127 |
| Eco47I | GGWCC | 4 cut(s) | 937, 986, 1867, 2503 |
| Eco52I | CGGCCG | 1 cut(s) | 2404 |
| Eco53kI | GAGCTC | 2 cut(s) | 1096, 2125 |
| Eco57I | CTGAAG | 3 cut(s) | 73, 1815, 2868 |
| Eco91I | GGTNACC | 1 cut(s) | 1649 |
| EcoICRI | GAGCTC | 2 cut(s) | 1096, 2125 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1867 |
| EcoO65I | GGTNACC | 1 cut(s) | 1649 |
| EcoRI | GAATTC | 2 cut(s) | 1992, 2852 |
| EcoRII | CCWGG | 4 cut(s) | 351, 387, 988, 2241 |
| EcoT14I | CCWWGG | 1 cut(s) | 3087 |
| EcoT22I | ATGCAT | 3 cut(s) | 268, 1252, 1494 |
| EcoT38I | GRGCYC | 3 cut(s) | 1098, 1908, 2127 |
| ErhI | CCWWGG | 1 cut(s) | 3087 |
| Esp3I | CGTCTC | 1 cut(s) | 2087 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 266, 298, 612, 644, 1329, 1361 |
| FaqI | GGGAC | 3 cut(s) | 1522, 1566, 3008 |
| FauI | CCCGC | 1 cut(s) | 2764 |
| FblI | GTMKAC | 1 cut(s) | 2689 |
| FokI | GGATG | 9 cut(s) | 299, 881, 1148, 1247, 1501, 1595, 2052, 2924, 2951 |
| FriOI | GRGCYC | 3 cut(s) | 1098, 1908, 2127 |
| FspBI | CTAG | 3 cut(s) | 1275, 1769, 2693 |
| GlaI | GCGC | 2 cut(s) | 107, 2399 |
| GsaI | CCCAGC | 2 cut(s) | 1763, 3244 |
| GsuI | CTGGAG | 2 cut(s) | 987, 2111 |
| HaeII | RGCGCY | 1 cut(s) | 2401 |
| HapII | CCGG | 1 cut(s) | 2462 |
| HhaI | GCGC | 2 cut(s) | 108, 2400 |
| Hin6I | GCGC | 2 cut(s) | 106, 2398 |
| HinP1I | GCGC | 2 cut(s) | 106, 2398 |
| HincII | GTYRAC | 6 cut(s) | 145, 1280, 1854, 2690, 2713, 2820 |
| HindII | GTYRAC | 6 cut(s) | 145, 1280, 1854, 2690, 2713, 2820 |
| HindIII | AAGCTT | 3 cut(s) | 1086, 1684, 2017 |
| HpaI | GTTAAC | 1 cut(s) | 145 |
| HpaII | CCGG | 1 cut(s) | 2462 |
| HphI | GGTGA | 6 cut(s) | 401, 407, 1382, 1661, 2754, 2890 |
| Hpy99I | CGWCG | 1 cut(s) | 2691 |
| HpyCH4III | ACNGT | 6 cut(s) | 1045, 1655, 1976, 2766, 2865, 3133 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 263, 2406, 2409, 2412 |
| HspAI | GCGC | 2 cut(s) | 106, 2398 |
| KspAI | GTTAAC | 1 cut(s) | 145 |
| LguI | GCTCTTC | 1 cut(s) | 1103 |
| LmnI | GCTCC | 3 cut(s) | 26, 205, 2130 |
| Lsp1109I | GCAGC | 7 cut(s) | 470, 740, 2174, 2312, 2387, 2396, 2645 |
| LweI | GCATC | 5 cut(s) | 275, 388, 596, 1237, 1479 |
| MabI | ACCWGGT | 1 cut(s) | 351 |
| MaeI | CTAG | 3 cut(s) | 1275, 1769, 2693 |
| MaeIII | GTNAC | 6 cut(s) | 856, 1307, 1409, 1649, 2271, 2425 |
| MfeI | CAATTG | 1 cut(s) | 402 |
| MflI | RGATCY | 7 cut(s) | 300, 358, 1213, 2032, 2173, 2245, 2926 |
| MhlI | GDGCHC | 3 cut(s) | 1098, 1908, 2127 |
| MlsI | TGGCCA | 2 cut(s) | 2578, 2735 |
| MluNI | TGGCCA | 2 cut(s) | 2578, 2735 |
| MlyI | GAGTC | 6 cut(s) | 1446, 1544, 2245, 2661, 2815, 3255 |
| MmeI | TCCRAC | 5 cut(s) | 431, 580, 2266, 2459, 2625 |
| Mox20I | TGGCCA | 2 cut(s) | 2578, 2735 |
| Mph1103I | ATGCAT | 3 cut(s) | 268, 1252, 1494 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1341, 1524, 2451 |
| MscI | TGGCCA | 2 cut(s) | 2578, 2735 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1487, 1899, 3092 |
| Msp20I | TGGCCA | 2 cut(s) | 2578, 2735 |
| MspA1I | CMGCKG | 3 cut(s) | 1680, 2112, 2409 |
| MspCI | CTTAAG | 1 cut(s) | 2195 |
| MspI | CCGG | 1 cut(s) | 2462 |
| MspR9I | CCNGG | 4 cut(s) | 353, 389, 990, 2243 |
| MunI | CAATTG | 1 cut(s) | 402 |
| MvaI | CCWGG | 4 cut(s) | 353, 389, 990, 2243 |
| MvnI | CGCG | 2 cut(s) | 106, 2542 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 263, 2406, 2409, 2412 |
| NcoI | CCATGG | 1 cut(s) | 3087 |
| NlaIV | GGNNCC | 4 cut(s) | 28, 1868, 1906, 2776 |
| NmuCI | GTSAC | 3 cut(s) | 856, 1409, 1649 |
| NotI | GCGGCCGC | 1 cut(s) | 2404 |
| NsiI | ATGCAT | 3 cut(s) | 268, 1252, 1494 |
| NspI | RCATGY | 2 cut(s) | 1359, 2877 |
| NspV | TTCGAA | 1 cut(s) | 272 |
| OliI | CACNNNNGTG | 1 cut(s) | 1899 |
| PagI | TCATGA | 1 cut(s) | 1081 |
| PaqCI | CACCTGC | 1 cut(s) | 2909 |
| PceI | AGGCCT | 1 cut(s) | 1454 |
| PciSI | GCTCTTC | 1 cut(s) | 1103 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2091 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1341, 1524, 2451 |
| PfoI | TCCNGGA | 1 cut(s) | 988 |
| PinAI | ACCGGT | 1 cut(s) | 2461 |
| PleI | GAGTC | 6 cut(s) | 1445, 1543, 2244, 2661, 2815, 3254 |
| PpsI | GAGTC | 6 cut(s) | 1445, 1543, 2244, 2661, 2815, 3254 |
| PpuMI | RGGWCCY | 1 cut(s) | 1867 |
| PshBI | ATTAAT | 1 cut(s) | 3125 |
| Psp124BI | GAGCTC | 2 cut(s) | 1098, 2127 |
| Psp5II | RGGWCCY | 1 cut(s) | 1867 |
| Psp6I | CCWGG | 4 cut(s) | 351, 387, 988, 2241 |
| PspEI | GGTNACC | 1 cut(s) | 1649 |
| PspFI | CCCAGC | 2 cut(s) | 1759, 3240 |
| PspGI | CCWGG | 4 cut(s) | 351, 387, 988, 2241 |
| PspN4I | GGNNCC | 4 cut(s) | 28, 1868, 1906, 2776 |
| PspOMI | GGGCCC | 1 cut(s) | 1904 |
| PspPI | GGNCC | 7 cut(s) | 385, 937, 986, 1867, 1904, 1905, 2503 |
| PspPPI | RGGWCCY | 1 cut(s) | 1867 |
| PsuI | RGATCY | 7 cut(s) | 300, 358, 1213, 2032, 2173, 2245, 2926 |
| PvuII | CAGCTG | 1 cut(s) | 2112 |
| RsaI | GTAC | 4 cut(s) | 131, 1398, 2346, 2862 |
| RsaNI | GTAC | 4 cut(s) | 130, 1397, 2345, 2861 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1487, 1899, 3092 |
| SacI | GAGCTC | 2 cut(s) | 1098, 2127 |
| SalI | GTCGAC | 1 cut(s) | 2688 |
| SapI | GCTCTTC | 1 cut(s) | 1103 |
| Sau96I | GGNCC | 7 cut(s) | 385, 937, 986, 1867, 1904, 1905, 2503 |
| SchI | GAGTC | 6 cut(s) | 1446, 1544, 2245, 2661, 2815, 3255 |
| ScrFI | CCNGG | 4 cut(s) | 353, 389, 990, 2243 |
| SduI | GDGCHC | 3 cut(s) | 1098, 1908, 2127 |
| SexAI | ACCWGGT | 1 cut(s) | 351 |
| SfaNI | GCATC | 5 cut(s) | 275, 388, 596, 1237, 1479 |
| SfuI | TTCGAA | 1 cut(s) | 272 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2461 |
| SinI | GGWCC | 4 cut(s) | 937, 986, 1867, 2503 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1487, 1899, 3092 |
| SmlI | CTYRAG | 4 cut(s) | 1598, 2195, 2650, 3227 |
| SmoI | CTYRAG | 4 cut(s) | 1598, 2195, 2650, 3227 |
| SpeI | ACTAGT | 1 cut(s) | 2692 |
| SseBI | AGGCCT | 1 cut(s) | 1454 |
| SspI | AATATT | 1 cut(s) | 643 |
| SspMI | CTAG | 3 cut(s) | 1275, 1769, 2693 |
| SstI | GAGCTC | 2 cut(s) | 1098, 2127 |
| StuI | AGGCCT | 1 cut(s) | 1454 |
| StyD4I | CCNGG | 4 cut(s) | 351, 387, 988, 2241 |
| StyI | CCWWGG | 1 cut(s) | 3087 |
| TaaI | ACNGT | 6 cut(s) | 1045, 1655, 1976, 2766, 2865, 3133 |
| TaqI | TCGA | 9 cut(s) | 213, 272, 1051, 1722, 2085, 2351, 2689, 3181, 3258 |
| TatI | WGTACW | 3 cut(s) | 129, 1396, 2860 |
| TauI | GCSGC | 5 cut(s) | 476, 2406, 2409, 2415, 2518 |
| TscAI | CASTG | 3 cut(s) | 1979, 2263, 2302 |
| TseFI | GTSAC | 3 cut(s) | 856, 1409, 1649 |
| TseI | GCWGC | 7 cut(s) | 458, 753, 2187, 2325, 2400, 2409, 2658 |
| Tsp45I | GTSAC | 3 cut(s) | 856, 1409, 1649 |
| TspGWI | ACGGA | 1 cut(s) | 1176 |
| TspRI | CASTG | 3 cut(s) | 1979, 2263, 2302 |
| Vha464I | CTTAAG | 1 cut(s) | 2195 |
| VpaK11BI | GGWCC | 4 cut(s) | 937, 986, 1867, 2503 |
| VspI | ATTAAT | 1 cut(s) | 3125 |
| XapI | RAATTY | 8 cut(s) | 1710, 1992, 2526, 2534, 2589, 2607, 2852, 2973 |
| XceI | RCATGY | 2 cut(s) | 1359, 2877 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1894, 2785 |
| XmiI | GTMKAC | 1 cut(s) | 2689 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1341, 1524, 2451 |
| XspI | CTAG | 3 cut(s) | 1275, 1769, 2693 |
| Zsp2I | ATGCAT | 3 cut(s) | 268, 1252, 1494 |