Transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 508 |
| Acc36I | ACCTGC | 1 cut(s) | 508 |
| AclWI | GGATC | 2 cut(s) | 279, 375 |
| AcoI | YGGCCR | 1 cut(s) | 313 |
| AflIII | ACRYGT | 1 cut(s) | 137 |
| AgsI | TTSAA | 7 cut(s) | 28, 100, 155, 172, 404, 474, 548 |
| AjnI | CCWGG | 1 cut(s) | 126 |
| AluBI | AGCT | 3 cut(s) | 248, 432, 494 |
| AluI | AGCT | 3 cut(s) | 248, 432, 494 |
| AlwI | GGATC | 2 cut(s) | 279, 375 |
| AoxI | GGCC | 3 cut(s) | 124, 313, 580 |
| ApeKI | GCWGC | 2 cut(s) | 110, 491 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 180, 212 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 86 |
| AsuC2I | CCSGG | 1 cut(s) | 66 |
| AsuHPI | GGTGA | 1 cut(s) | 434 |
| BalI | TGGCCA | 1 cut(s) | 315 |
| BbvI | GCAGC | 2 cut(s) | 97, 503 |
| BccI | CCATC | 2 cut(s) | 4, 266 |
| BceAI | ACGGC | 1 cut(s) | 523 |
| BciT130I | CCWGG | 1 cut(s) | 128 |
| BclI | TGATCA | 1 cut(s) | 418 |
| BcnI | CCSGG | 1 cut(s) | 66 |
| BfaI | CTAG | 2 cut(s) | 521, 584 |
| BfuAI | ACCTGC | 1 cut(s) | 508 |
| BisI | GCNGC | 2 cut(s) | 111, 492 |
| BlsI | GCNGC | 2 cut(s) | 112, 493 |
| Bme1390I | CCNGG | 2 cut(s) | 66, 128 |
| BmiI | GGNNCC | 2 cut(s) | 78, 89 |
| BmrFI | CCNGG | 2 cut(s) | 66, 128 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 429, 461 |
| BpuMI | CCSGG | 1 cut(s) | 66 |
| Bse1I | ACTGG | 3 cut(s) | 195, 530, 570 |
| BseBI | CCWGG | 1 cut(s) | 128 |
| BseNI | ACTGG | 3 cut(s) | 195, 530, 570 |
| BseXI | GCAGC | 2 cut(s) | 97, 503 |
| BsgI | GTGCAG | 1 cut(s) | 162 |
| Bsh1285I | CGRYCG | 1 cut(s) | 244 |
| BshFI | GGCC | 3 cut(s) | 126, 315, 582 |
| BsiEI | CGRYCG | 1 cut(s) | 244 |
| BsiSI | CCGG | 1 cut(s) | 66 |
| BsnI | GGCC | 3 cut(s) | 126, 315, 582 |
| Bsp143I | GATC | 5 cut(s) | 241, 277, 284, 367, 418 |
| BspANI | GGCC | 3 cut(s) | 126, 315, 582 |
| BspLI | GGNNCC | 2 cut(s) | 78, 89 |
| BspMI | ACCTGC | 1 cut(s) | 508 |
| BspPI | GGATC | 2 cut(s) | 279, 375 |
| BsrI | ACTGG | 3 cut(s) | 195, 530, 570 |
| BssMI | GATC | 5 cut(s) | 241, 277, 284, 367, 418 |
| Bst2UI | CCWGG | 1 cut(s) | 128 |
| Bst4CI | ACNGT | 3 cut(s) | 299, 377, 395 |
| BstKTI | GATC | 5 cut(s) | 244, 280, 287, 370, 421 |
| BstMBI | GATC | 5 cut(s) | 241, 277, 284, 367, 418 |
| BstMCI | CGRYCG | 1 cut(s) | 244 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 500, 526, 535 |
| BstNI | CCWGG | 1 cut(s) | 128 |
| BstNSI | RCATGY | 1 cut(s) | 141 |
| BstSCI | CCNGG | 2 cut(s) | 64, 126 |
| BstV1I | GCAGC | 2 cut(s) | 97, 503 |
| BstX2I | RGATCY | 1 cut(s) | 284 |
| BstYI | RGATCY | 1 cut(s) | 284 |
| BsuRI | GGCC | 3 cut(s) | 126, 315, 582 |
| BtsIMutI | CAGTG | 2 cut(s) | 391, 563 |
| BveI | ACCTGC | 1 cut(s) | 508 |
| CseI | GACGC | 1 cut(s) | 311 |
| CviAII | CATG | 1 cut(s) | 138 |
| CviJI | RGCY | 9 cut(s) | 126, 194, 248, 315, 432, 494, 529, 582, 601 |
| CviKI_1 | RGCY | 9 cut(s) | 126, 194, 248, 315, 432, 494, 529, 582, 601 |
| DpnI | GATC | 5 cut(s) | 243, 279, 286, 369, 420 |
| DpnII | GATC | 5 cut(s) | 241, 277, 284, 367, 418 |
| EaeI | YGGCCR | 1 cut(s) | 313 |
| Eco147I | AGGCCT | 1 cut(s) | 126 |
| EcoRII | CCWGG | 1 cut(s) | 126 |
| FaeI | CATG | 1 cut(s) | 141 |
| FatI | CATG | 1 cut(s) | 137 |
| FauNDI | CATATG | 2 cut(s) | 318, 449 |
| FbaI | TGATCA | 1 cut(s) | 418 |
| Fnu4HI | GCNGC | 2 cut(s) | 111, 492 |
| Fsp4HI | GCNGC | 2 cut(s) | 111, 492 |
| FspBI | CTAG | 2 cut(s) | 521, 584 |
| GluI | GCNGC | 2 cut(s) | 111, 492 |
| HaeIII | GGCC | 3 cut(s) | 126, 315, 582 |
| HapII | CCGG | 1 cut(s) | 66 |
| HgaI | GACGC | 1 cut(s) | 311 |
| Hin1II | CATG | 1 cut(s) | 141 |
| HinfI | GANTC | 1 cut(s) | 560 |
| HpaII | CCGG | 1 cut(s) | 66 |
| HphI | GGTGA | 1 cut(s) | 434 |
| Hpy166II | GTNNAC | 1 cut(s) | 442 |
| Hpy188I | TCNGA | 5 cut(s) | 36, 81, 282, 327, 346 |
| Hpy188III | TCNNGA | 1 cut(s) | 606 |
| Hpy8I | GTNNAC | 1 cut(s) | 442 |
| Hpy99I | CGWCG | 1 cut(s) | 538 |
| HpyAV | CCTTC | 1 cut(s) | 94 |
| HpyCH4III | ACNGT | 3 cut(s) | 299, 377, 395 |
| HpyCH4IV | ACGT | 1 cut(s) | 576 |
| HpyCH4V | TGCA | 1 cut(s) | 143 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 500, 526, 535 |
| HpySE526I | ACGT | 1 cut(s) | 576 |
| Hsp92II | CATG | 1 cut(s) | 141 |
| Ksp22I | TGATCA | 1 cut(s) | 418 |
| Kzo9I | GATC | 5 cut(s) | 241, 277, 284, 367, 418 |
| LmnI | GCTCC | 1 cut(s) | 499 |
| LpnPI | CCDG | 8 cut(s) | 79, 113, 140, 176, 426, 511, 513, 551 |
| Lsp1109I | GCAGC | 2 cut(s) | 97, 503 |
| MaeI | CTAG | 2 cut(s) | 521, 584 |
| MaeII | ACGT | 1 cut(s) | 576 |
| MalI | GATC | 5 cut(s) | 243, 279, 286, 369, 420 |
| MboI | GATC | 5 cut(s) | 241, 277, 284, 367, 418 |
| MboII | GAAGA | 2 cut(s) | 19, 560 |
| MfeI | CAATTG | 2 cut(s) | 309, 543 |
| MflI | RGATCY | 1 cut(s) | 284 |
| MlsI | TGGCCA | 1 cut(s) | 315 |
| MluCI | AATT | 6 cut(s) | 167, 172, 309, 328, 404, 543 |
| MluNI | TGGCCA | 1 cut(s) | 315 |
| MmeI | TCCRAC | 1 cut(s) | 326 |
| MnlI | CCTC | 5 cut(s) | 67, 97, 208, 259, 455 |
| Mox20I | TGGCCA | 1 cut(s) | 315 |
| MroXI | GAANNNNTTC | 1 cut(s) | 86 |
| MscI | TGGCCA | 1 cut(s) | 315 |
| MslI | CAYNNNNRTG | 1 cut(s) | 136 |
| Msp20I | TGGCCA | 1 cut(s) | 315 |
| MspI | CCGG | 1 cut(s) | 66 |
| MspR9I | CCNGG | 2 cut(s) | 66, 128 |
| MunI | CAATTG | 2 cut(s) | 309, 543 |
| MvaI | CCWGG | 1 cut(s) | 128 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 500, 526, 535 |
| NciI | CCSGG | 1 cut(s) | 66 |
| NdeI | CATATG | 2 cut(s) | 318, 449 |
| NdeII | GATC | 5 cut(s) | 241, 277, 284, 367, 418 |
| NlaIII | CATG | 1 cut(s) | 141 |
| NlaIV | GGNNCC | 2 cut(s) | 78, 89 |
| NspI | RCATGY | 1 cut(s) | 141 |
| PaqCI | CACCTGC | 1 cut(s) | 508 |
| PceI | AGGCCT | 1 cut(s) | 126 |
| PciI | ACATGT | 1 cut(s) | 137 |
| PdmI | GAANNNNTTC | 1 cut(s) | 86 |
| PfeI | GAWTC | 1 cut(s) | 560 |
| PkrI | GCNGC | 2 cut(s) | 112, 493 |
| Ple19I | CGATCG | 1 cut(s) | 244 |
| PscI | ACATGT | 1 cut(s) | 137 |
| Psp6I | CCWGG | 1 cut(s) | 126 |
| PspGI | CCWGG | 1 cut(s) | 126 |
| PspN4I | GGNNCC | 2 cut(s) | 78, 89 |
| PsuI | RGATCY | 1 cut(s) | 284 |
| PvuI | CGATCG | 1 cut(s) | 244 |
| RseI | CAYNNNNRTG | 1 cut(s) | 136 |
| SatI | GCNGC | 2 cut(s) | 111, 492 |
| Sau3AI | GATC | 5 cut(s) | 241, 277, 284, 367, 418 |
| ScrFI | CCNGG | 2 cut(s) | 66, 128 |
| SetI | ASST | 9 cut(s) | 78, 108, 250, 366, 434, 447, 496, 502, 579 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 136 |
| Sse9I | AATT | 6 cut(s) | 167, 172, 309, 328, 404, 543 |
| SseBI | AGGCCT | 1 cut(s) | 126 |
| SspI | AATATT | 2 cut(s) | 19, 470 |
| SspMI | CTAG | 2 cut(s) | 521, 584 |
| StuI | AGGCCT | 1 cut(s) | 126 |
| StyD4I | CCNGG | 2 cut(s) | 64, 126 |
| TaaI | ACNGT | 3 cut(s) | 299, 377, 395 |
| TaiI | ACGT | 1 cut(s) | 579 |
| TaqI | TCGA | 2 cut(s) | 244, 397 |
| TasI | AATT | 6 cut(s) | 167, 172, 309, 328, 404, 543 |
| TfiI | GAWTC | 1 cut(s) | 560 |
| TscAI | CASTG | 2 cut(s) | 398, 570 |
| TseI | GCWGC | 2 cut(s) | 110, 491 |
| TspDTI | ATGAA | 4 cut(s) | 132, 363, 440, 480 |
| TspRI | CASTG | 2 cut(s) | 398, 570 |
| XceI | RCATGY | 1 cut(s) | 141 |
| XmnI | GAANNNNTTC | 1 cut(s) | 86 |
| XspI | CTAG | 2 cut(s) | 521, 584 |