TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 223 - 291 | 3.8e-16 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1049 |
| Acc16I | TGCGCA | 1 cut(s) | 221 |
| AciI | CCGC | 4 cut(s) | 35, 1137, 1163, 1166 |
| AclWI | GGATC | 3 cut(s) | 18, 178, 653 |
| AcoI | YGGCCR | 1 cut(s) | 130 |
| AcsI | RAATTY | 2 cut(s) | 204, 349 |
| AdeI | CACNNNGTG | 1 cut(s) | 1159 |
| AfaI | GTAC | 1 cut(s) | 774 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 116, 161 |
| AgeI | ACCGGT | 1 cut(s) | 46 |
| AjnI | CCWGG | 2 cut(s) | 982, 1130 |
| AluBI | AGCT | 4 cut(s) | 527, 979, 1080, 1117 |
| AluI | AGCT | 4 cut(s) | 527, 979, 1080, 1117 |
| Alw21I | GWGCWC | 1 cut(s) | 1155 |
| Alw26I | GTCTC | 1 cut(s) | 237 |
| Alw44I | GTGCAC | 1 cut(s) | 1151 |
| AlwI | GGATC | 3 cut(s) | 18, 178, 653 |
| Ama87I | CYCGRG | 1 cut(s) | 116 |
| AoxI | GGCC | 6 cut(s) | 30, 130, 163, 1138, 1173, 1190 |
| ApaLI | GTGCAC | 1 cut(s) | 1151 |
| ApeKI | GCWGC | 1 cut(s) | 581 |
| ApoI | RAATTY | 2 cut(s) | 204, 349 |
| AseI | ATTAAT | 1 cut(s) | 1056 |
| AsiGI | ACCGGT | 1 cut(s) | 46 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 443, 675, 858 |
| AspLEI | GCGC | 1 cut(s) | 222 |
| AspS9I | GGNCC | 2 cut(s) | 31, 1139 |
| AsuHPI | GGTGA | 4 cut(s) | 59, 382, 737, 864 |
| AvaI | CYCGRG | 1 cut(s) | 116 |
| AxyI | CCTNAGG | 1 cut(s) | 1143 |
| BaeGI | GKGCMC | 1 cut(s) | 1155 |
| Bbv12I | GWGCWC | 1 cut(s) | 1155 |
| BbvI | GCAGC | 1 cut(s) | 568 |
| BccI | CCATC | 3 cut(s) | 13, 270, 731 |
| BciT130I | CCWGG | 2 cut(s) | 984, 1132 |
| BcoDI | GTCTC | 1 cut(s) | 237 |
| BfaI | CTAG | 1 cut(s) | 734 |
| BglII | AGATCT | 1 cut(s) | 806 |
| BisI | GCNGC | 4 cut(s) | 582, 1138, 1163, 1166 |
| BlsI | GCNGC | 4 cut(s) | 583, 1139, 1164, 1167 |
| BmcAI | AGTACT | 1 cut(s) | 774 |
| Bme1390I | CCNGG | 2 cut(s) | 984, 1132 |
| BmeT110I | CYCGRG | 1 cut(s) | 116 |
| BmgT120I | GGNCC | 2 cut(s) | 31, 1139 |
| BmiI | GGNNCC | 1 cut(s) | 33 |
| BmrFI | CCNGG | 2 cut(s) | 984, 1132 |
| BmsI | GCATC | 4 cut(s) | 714, 813, 871, 975 |
| BpmI | CTGGAG | 2 cut(s) | 857, 1092 |
| BsaBI | GATNNNNATC | 1 cut(s) | 921 |
| BsaJI | CCNNGG | 5 cut(s) | 27, 166, 290, 396, 1131 |
| BsaWI | WCCGGW | 1 cut(s) | 46 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 69, 99, 234, 264 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 116, 161 |
| Bse118I | RCCGGY | 1 cut(s) | 46 |
| Bse1I | ACTGG | 1 cut(s) | 133 |
| Bse21I | CCTNAGG | 1 cut(s) | 1143 |
| Bse3DI | GCAATG | 1 cut(s) | 684 |
| Bse8I | GATNNNNATC | 1 cut(s) | 921 |
| BseBI | CCWGG | 2 cut(s) | 984, 1132 |
| BseDI | CCNNGG | 5 cut(s) | 27, 166, 290, 396, 1131 |
| BseGI | GGATG | 3 cut(s) | 337, 828, 922 |
| BseJI | GATNNNNATC | 1 cut(s) | 921 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 116, 161 |
| BseMI | GCAATG | 1 cut(s) | 684 |
| BseMII | CTCAG | 1 cut(s) | 1134 |
| BseNI | ACTGG | 1 cut(s) | 133 |
| BseRI | GAGGAG | 1 cut(s) | 379 |
| BseSI | GKGCMC | 1 cut(s) | 1155 |
| BseXI | GCAGC | 1 cut(s) | 568 |
| BshFI | GGCC | 6 cut(s) | 32, 132, 165, 1140, 1175, 1192 |
| BshTI | ACCGGT | 1 cut(s) | 46 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1155 |
| BsiHKCI | CYCGRG | 1 cut(s) | 116 |
| BsiSI | CCGG | 2 cut(s) | 47, 1196 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 116, 161 |
| BsmAI | GTCTC | 1 cut(s) | 237 |
| BsmI | GAATGC | 1 cut(s) | 445 |
| BsnI | GGCC | 6 cut(s) | 32, 132, 165, 1140, 1175, 1192 |
| BsoBI | CYCGRG | 1 cut(s) | 116 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1155 |
| Bsp143I | GATC | 5 cut(s) | 23, 170, 181, 658, 806 |
| BspACI | CCGC | 4 cut(s) | 35, 1137, 1163, 1166 |
| BspANI | GGCC | 6 cut(s) | 32, 132, 165, 1140, 1175, 1192 |
| BspCNI | CTCAG | 1 cut(s) | 1135 |
| BspHI | TCATGA | 1 cut(s) | 910 |
| BspLI | GGNNCC | 1 cut(s) | 33 |
| BspPI | GGATC | 3 cut(s) | 18, 178, 653 |
| BsrDI | GCAATG | 1 cut(s) | 684 |
| BsrFI | RCCGGY | 1 cut(s) | 46 |
| BsrI | ACTGG | 1 cut(s) | 133 |
| BssAI | RCCGGY | 1 cut(s) | 46 |
| BssECI | CCNNGG | 5 cut(s) | 27, 166, 290, 396, 1131 |
| BssMI | GATC | 5 cut(s) | 23, 170, 181, 658, 806 |
| BssT1I | CCWWGG | 3 cut(s) | 166, 290, 396 |
| Bst2UI | CCWGG | 2 cut(s) | 984, 1132 |
| Bst4CI | ACNGT | 1 cut(s) | 647 |
| Bst6I | CTCTTC | 2 cut(s) | 147, 252 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 832, 1159 |
| BstC8I | GCNNGC | 3 cut(s) | 579, 729, 886 |
| BstDEI | CTNAG | 1 cut(s) | 1143 |
| BstF5I | GGATG | 3 cut(s) | 337, 828, 922 |
| BstHHI | GCGC | 1 cut(s) | 222 |
| BstKTI | GATC | 5 cut(s) | 26, 173, 184, 661, 809 |
| BstMAI | GTCTC | 1 cut(s) | 237 |
| BstMBI | GATC | 5 cut(s) | 23, 170, 181, 658, 806 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 832, 894, 1159 |
| BstNI | CCWGG | 2 cut(s) | 984, 1132 |
| BstNSI | RCATGY | 3 cut(s) | 581, 693, 764 |
| BstSCI | CCNGG | 2 cut(s) | 982, 1130 |
| BstSLI | GKGCMC | 1 cut(s) | 1155 |
| BstV1I | GCAGC | 1 cut(s) | 568 |
| BstX2I | RGATCY | 3 cut(s) | 23, 658, 806 |
| BstYI | RGATCY | 3 cut(s) | 23, 658, 806 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1143 |
| BsuRI | GGCC | 6 cut(s) | 32, 132, 165, 1140, 1175, 1192 |
| BtsCI | GGATG | 3 cut(s) | 337, 828, 922 |
| BtsI | GCAGTG | 1 cut(s) | 511 |
| BtsIMutI | CAGTG | 2 cut(s) | 511, 652 |
| Cac8I | GCNNGC | 3 cut(s) | 579, 729, 886 |
| CciI | TCATGA | 1 cut(s) | 910 |
| CfoI | GCGC | 1 cut(s) | 222 |
| Cfr10I | RCCGGY | 1 cut(s) | 46 |
| Cfr13I | GGNCC | 2 cut(s) | 31, 1139 |
| CseI | GACGC | 1 cut(s) | 1071 |
| Csp6I | GTAC | 1 cut(s) | 773 |
| CspAI | ACCGGT | 1 cut(s) | 46 |
| CviAII | CATG | 6 cut(s) | 247, 578, 690, 761, 827, 911 |
| CviQI | GTAC | 1 cut(s) | 773 |
| DdeI | CTNAG | 1 cut(s) | 1143 |
| DpnI | GATC | 5 cut(s) | 25, 172, 183, 660, 808 |
| DpnII | GATC | 5 cut(s) | 23, 170, 181, 658, 806 |
| DraI | TTTAAA | 1 cut(s) | 1021 |
| DraIII | CACNNNGTG | 1 cut(s) | 1159 |
| EaeI | YGGCCR | 1 cut(s) | 130 |
| Eam1104I | CTCTTC | 2 cut(s) | 147, 252 |
| EarI | CTCTTC | 2 cut(s) | 147, 252 |
| Eco130I | CCWWGG | 3 cut(s) | 166, 290, 396 |
| Eco147I | AGGCCT | 2 cut(s) | 1175, 1192 |
| Eco32I | GATATC | 1 cut(s) | 619 |
| Eco81I | CCTNAGG | 1 cut(s) | 1143 |
| Eco88I | CYCGRG | 1 cut(s) | 116 |
| EcoRII | CCWGG | 2 cut(s) | 982, 1130 |
| EcoRV | GATATC | 1 cut(s) | 619 |
| EcoT14I | CCWWGG | 3 cut(s) | 166, 290, 396 |
| EcoT22I | ATGCAT | 1 cut(s) | 828 |
| ErhI | CCWWGG | 3 cut(s) | 166, 290, 396 |
| FaeI | CATG | 6 cut(s) | 250, 581, 693, 764, 830, 914 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 663, 695 |
| FatI | CATG | 6 cut(s) | 246, 577, 689, 760, 826, 910 |
| FauI | CCCGC | 1 cut(s) | 42 |
| Fnu4HI | GCNGC | 4 cut(s) | 582, 1138, 1163, 1166 |
| FokI | GGATG | 3 cut(s) | 344, 835, 929 |
| Fsp4HI | GCNGC | 4 cut(s) | 582, 1138, 1163, 1166 |
| FspBI | CTAG | 1 cut(s) | 734 |
| FspI | TGCGCA | 1 cut(s) | 221 |
| GlaI | GCGC | 1 cut(s) | 221 |
| GluI | GCNGC | 4 cut(s) | 582, 1138, 1163, 1166 |
| GsuI | CTGGAG | 2 cut(s) | 857, 1092 |
| HaeIII | GGCC | 6 cut(s) | 32, 132, 165, 1140, 1175, 1192 |
| HapII | CCGG | 2 cut(s) | 47, 1196 |
| HgaI | GACGC | 1 cut(s) | 1071 |
| HhaI | GCGC | 1 cut(s) | 222 |
| Hin1II | CATG | 6 cut(s) | 250, 581, 693, 764, 830, 914 |
| Hin6I | GCGC | 1 cut(s) | 220 |
| HinP1I | GCGC | 1 cut(s) | 220 |
| HincII | GTYRAC | 1 cut(s) | 152 |
| HindII | GTYRAC | 1 cut(s) | 152 |
| HinfI | GANTC | 5 cut(s) | 60, 199, 380, 869, 1093 |
| HpaII | CCGG | 2 cut(s) | 47, 1196 |
| HphI | GGTGA | 4 cut(s) | 59, 382, 737, 864 |
| Hpy166II | GTNNAC | 5 cut(s) | 152, 532, 545, 707, 1153 |
| Hpy188I | TCNGA | 3 cut(s) | 124, 971, 1180 |
| Hpy188III | TCNNGA | 6 cut(s) | 430, 464, 632, 680, 911, 1071 |
| Hpy8I | GTNNAC | 5 cut(s) | 152, 532, 545, 707, 1153 |
| Hpy99I | CGWCG | 1 cut(s) | 93 |
| HpyAV | CCTTC | 5 cut(s) | 21, 74, 256, 454, 527 |
| HpyCH4III | ACNGT | 1 cut(s) | 647 |
| HpyCH4IV | ACGT | 1 cut(s) | 892 |
| HpyCH4V | TGCA | 8 cut(s) | 304, 478, 584, 650, 689, 727, 826, 1153 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 832, 894, 1159 |
| HpyF3I | CTNAG | 1 cut(s) | 1143 |
| HpySE526I | ACGT | 1 cut(s) | 892 |
| Hsp92II | CATG | 6 cut(s) | 250, 581, 693, 764, 830, 914 |
| HspAI | GCGC | 1 cut(s) | 220 |
| Kzo9I | GATC | 5 cut(s) | 23, 170, 181, 658, 806 |
| Lsp1109I | GCAGC | 1 cut(s) | 568 |
| LweI | GCATC | 4 cut(s) | 714, 813, 871, 975 |
| MaeI | CTAG | 1 cut(s) | 734 |
| MaeII | ACGT | 1 cut(s) | 892 |
| MaeIII | GTNAC | 3 cut(s) | 422, 641, 870 |
| MalI | GATC | 5 cut(s) | 25, 172, 183, 660, 808 |
| MboI | GATC | 5 cut(s) | 23, 170, 181, 658, 806 |
| MboII | GAAGA | 9 cut(s) | 134, 208, 269, 285, 358, 668, 791, 1001, 1028 |
| MfeI | CAATTG | 2 cut(s) | 359, 486 |
| MflI | RGATCY | 3 cut(s) | 23, 658, 806 |
| MhlI | GDGCHC | 1 cut(s) | 1155 |
| MlyI | GAGTC | 3 cut(s) | 69, 389, 878 |
| MmeI | TCCRAC | 2 cut(s) | 102, 130 |
| Mph1103I | ATGCAT | 1 cut(s) | 828 |
| MroXI | GAANNNNTTC | 3 cut(s) | 443, 675, 858 |
| MseI | TTAA | 4 cut(s) | 387, 698, 1020, 1056 |
| MslI | CAYNNNNRTG | 4 cut(s) | 251, 309, 552, 915 |
| MspI | CCGG | 2 cut(s) | 47, 1196 |
| MspR9I | CCNGG | 2 cut(s) | 984, 1132 |
| MunI | CAATTG | 2 cut(s) | 359, 486 |
| Mva1269I | GAATGC | 1 cut(s) | 445 |
| MvaI | CCWGG | 2 cut(s) | 984, 1132 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 832, 894, 1159 |
| NdeII | GATC | 5 cut(s) | 23, 170, 181, 658, 806 |
| NlaIII | CATG | 6 cut(s) | 250, 581, 693, 764, 830, 914 |
| NlaIV | GGNNCC | 1 cut(s) | 33 |
| NmeAIII | GCCGAG | 2 cut(s) | 8, 108 |
| NmuCI | GTSAC | 1 cut(s) | 870 |
| NsbI | TGCGCA | 1 cut(s) | 221 |
| NsiI | ATGCAT | 1 cut(s) | 828 |
| NspI | RCATGY | 3 cut(s) | 581, 693, 764 |
| PaeI | GCATGC | 1 cut(s) | 581 |
| PagI | TCATGA | 1 cut(s) | 910 |
| PceI | AGGCCT | 2 cut(s) | 1175, 1192 |
| PctI | GAATGC | 1 cut(s) | 445 |
| PdmI | GAANNNNTTC | 3 cut(s) | 443, 675, 858 |
| PfeI | GAWTC | 2 cut(s) | 199, 1093 |
| PinAI | ACCGGT | 1 cut(s) | 46 |
| PkrI | GCNGC | 4 cut(s) | 583, 1139, 1164, 1167 |
| PleI | GAGTC | 3 cut(s) | 68, 388, 877 |
| PpsI | GAGTC | 3 cut(s) | 68, 388, 877 |
| PshBI | ATTAAT | 1 cut(s) | 1056 |
| PsiI | TTATAA | 1 cut(s) | 1049 |
| Psp6I | CCWGG | 2 cut(s) | 982, 1130 |
| PspGI | CCWGG | 2 cut(s) | 982, 1130 |
| PspN4I | GGNNCC | 1 cut(s) | 33 |
| PspPI | GGNCC | 2 cut(s) | 31, 1139 |
| PsuI | RGATCY | 3 cut(s) | 23, 658, 806 |
| RsaI | GTAC | 1 cut(s) | 774 |
| RsaNI | GTAC | 1 cut(s) | 773 |
| RseI | CAYNNNNRTG | 4 cut(s) | 251, 309, 552, 915 |
| SaqAI | TTAA | 4 cut(s) | 387, 698, 1020, 1056 |
| SatI | GCNGC | 4 cut(s) | 582, 1138, 1163, 1166 |
| Sau3AI | GATC | 5 cut(s) | 23, 170, 181, 658, 806 |
| Sau96I | GGNCC | 2 cut(s) | 31, 1139 |
| ScaI | AGTACT | 1 cut(s) | 774 |
| SchI | GAGTC | 3 cut(s) | 69, 389, 878 |
| ScrFI | CCNGG | 2 cut(s) | 984, 1132 |
| SduI | GDGCHC | 1 cut(s) | 1155 |
| SfaNI | GCATC | 4 cut(s) | 714, 813, 871, 975 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 251, 309, 552, 915 |
| SphI | GCATGC | 1 cut(s) | 581 |
| SseBI | AGGCCT | 2 cut(s) | 1175, 1192 |
| SsiI | CCGC | 4 cut(s) | 35, 1137, 1163, 1166 |
| SspMI | CTAG | 1 cut(s) | 734 |
| StuI | AGGCCT | 2 cut(s) | 1175, 1192 |
| StyD4I | CCNGG | 2 cut(s) | 982, 1130 |
| StyI | CCWWGG | 3 cut(s) | 166, 290, 396 |
| TaaI | ACNGT | 1 cut(s) | 647 |
| TaiI | ACGT | 1 cut(s) | 895 |
| TaqI | TCGA | 2 cut(s) | 184, 633 |
| TatI | WGTACW | 1 cut(s) | 772 |
| TauI | GCSGC | 3 cut(s) | 1140, 1165, 1168 |
| TfiI | GAWTC | 2 cut(s) | 199, 1093 |
| Tru1I | TTAA | 4 cut(s) | 387, 698, 1020, 1056 |
| Tru9I | TTAA | 4 cut(s) | 387, 698, 1020, 1056 |
| TscAI | CASTG | 2 cut(s) | 518, 652 |
| TseFI | GTSAC | 1 cut(s) | 870 |
| TseI | GCWGC | 1 cut(s) | 581 |
| Tsp45I | GTSAC | 1 cut(s) | 870 |
| TspDTI | ATGAA | 4 cut(s) | 134, 429, 899, 1043 |
| TspGWI | ACGGA | 3 cut(s) | 77, 203, 651 |
| TspRI | CASTG | 2 cut(s) | 518, 652 |
| VneI | GTGCAC | 1 cut(s) | 1151 |
| VspI | ATTAAT | 1 cut(s) | 1056 |
| XapI | RAATTY | 2 cut(s) | 204, 349 |
| XceI | RCATGY | 3 cut(s) | 581, 693, 764 |
| XmnI | GAANNNNTTC | 3 cut(s) | 443, 675, 858 |
| XspI | CTAG | 1 cut(s) | 734 |
| ZrmI | AGTACT | 1 cut(s) | 774 |
| Zsp2I | ATGCAT | 1 cut(s) | 828 |