TMV resistance protein N-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 2520 |
| AccI | GTMKAC | 3 cut(s) | 16, 1372, 1685 |
| AccII | CGCG | 3 cut(s) | 255, 808, 2405 |
| AciI | CCGC | 7 cut(s) | 253, 255, 648, 1561, 1574, 2169, 2520 |
| AclI | AACGTT | 1 cut(s) | 925 |
| AclWI | GGATC | 9 cut(s) | 494, 507, 1857, 1890, 1903, 1968, 1977, 2945, 3045 |
| AcoI | YGGCCR | 1 cut(s) | 479 |
| AcuI | CTGAAG | 2 cut(s) | 1228, 1446 |
| AfaI | GTAC | 3 cut(s) | 765, 1380, 2994 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 115, 116, 417, 941, 1336, 1892, 2242 |
| AflIII | ACRYGT | 3 cut(s) | 2995, 3016, 3113 |
| AgeI | ACCGGT | 1 cut(s) | 1375 |
| AjnI | CCWGG | 3 cut(s) | 1693, 1845, 1954 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2230, 2262 |
| Alw21I | GWGCWC | 4 cut(s) | 561, 1120, 1242, 2739 |
| Alw26I | GTCTC | 1 cut(s) | 2677 |
| Alw44I | GTGCAC | 1 cut(s) | 2735 |
| AlwI | GGATC | 9 cut(s) | 494, 507, 1857, 1890, 1903, 1968, 1977, 2945, 3045 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1694, 2327 |
| Ama87I | CYCGRG | 1 cut(s) | 643 |
| AoxI | GGCC | 5 cut(s) | 46, 479, 1327, 1338, 1602 |
| ApaLI | GTGCAC | 1 cut(s) | 2735 |
| ApeKI | GCWGC | 7 cut(s) | 196, 617, 1291, 1563, 2523, 2944, 3049 |
| AsiGI | ACCGGT | 1 cut(s) | 1375 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 435, 1431 |
| AspLEI | GCGC | 1 cut(s) | 810 |
| AspS9I | GGNCC | 3 cut(s) | 106, 1093, 1603 |
| AsuC2I | CCSGG | 3 cut(s) | 76, 644, 645 |
| AsuHPI | GGTGA | 4 cut(s) | 242, 406, 1874, 3226 |
| AsuII | TTCGAA | 1 cut(s) | 567 |
| AvaI | CYCGRG | 1 cut(s) | 643 |
| AvaII | GGWCC | 2 cut(s) | 106, 1093 |
| BaeGI | GKGCMC | 2 cut(s) | 2219, 2739 |
| BalI | TGGCCA | 1 cut(s) | 481 |
| BamHI | GGATCC | 2 cut(s) | 499, 1895 |
| BanII | GRGCYC | 2 cut(s) | 1242, 3155 |
| BauI | CACGAG | 3 cut(s) | 759, 1226, 3249 |
| BbsI | GAAGAC | 2 cut(s) | 851, 1529 |
| Bbv12I | GWGCWC | 4 cut(s) | 561, 1120, 1242, 2739 |
| BbvI | GCAGC | 7 cut(s) | 183, 629, 1303, 1575, 2510, 2931, 3036 |
| BccI | CCATC | 8 cut(s) | 209, 392, 588, 1397, 1454, 1651, 2087, 2701 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2515, 2549 |
| BciT130I | CCWGG | 3 cut(s) | 1695, 1847, 1956 |
| BclI | TGATCA | 2 cut(s) | 298, 2935 |
| BcnI | CCSGG | 3 cut(s) | 76, 644, 645 |
| BcoDI | GTCTC | 1 cut(s) | 2677 |
| BfaI | CTAG | 8 cut(s) | 135, 947, 983, 1217, 1400, 1466, 1547, 1649 |
| BfmI | CTRYAG | 3 cut(s) | 1686, 2367, 2524 |
| BglII | AGATCT | 3 cut(s) | 202, 1816, 2158 |
| Bme1390I | CCNGG | 6 cut(s) | 76, 644, 645, 1695, 1847, 1956 |
| Bme18I | GGWCC | 2 cut(s) | 106, 1093 |
| BmeT110I | CYCGRG | 1 cut(s) | 643 |
| BmgT120I | GGNCC | 3 cut(s) | 106, 1093, 1603 |
| BmiI | GGNNCC | 8 cut(s) | 71, 108, 371, 501, 1897, 2313, 2817, 3154 |
| BmrFI | CCNGG | 6 cut(s) | 76, 644, 645, 1695, 1847, 1956 |
| BmrI | ACTGGG | 1 cut(s) | 125 |
| BmsI | GCATC | 5 cut(s) | 115, 416, 1922, 2429, 2487 |
| BmuI | ACTGGG | 1 cut(s) | 125 |
| BpiI | GAAGAC | 2 cut(s) | 851, 1529 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 589, 621 |
| BpmI | CTGGAG | 3 cut(s) | 254, 1990, 2033 |
| Bpu14I | TTCGAA | 1 cut(s) | 567 |
| BpuEI | CTTGAG | 3 cut(s) | 119, 1308, 2080 |
| BpuMI | CCSGG | 3 cut(s) | 76, 644, 645 |
| BsaAI | YACGTR | 2 cut(s) | 2996, 3114 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1191 |
| BsaJI | CCNNGG | 8 cut(s) | 74, 253, 280, 445, 643, 1209, 1341, 2954 |
| BsaWI | WCCGGW | 1 cut(s) | 1375 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2674, 2704 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 115, 116, 417, 941, 1336, 1892, 2242 |
| Bse118I | RCCGGY | 1 cut(s) | 1375 |
| Bse1I | ACTGG | 8 cut(s) | 120, 438, 477, 743, 1096, 1973, 2798, 3237 |
| Bse3DI | GCAATG | 3 cut(s) | 1497, 2087, 3098 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1191 |
| BseBI | CCWGG | 3 cut(s) | 1695, 1847, 1956 |
| BseDI | CCNNGG | 8 cut(s) | 74, 253, 280, 445, 643, 1209, 1341, 2954 |
| BseGI | GGATG | 9 cut(s) | 407, 433, 455, 1732, 1796, 2054, 2096, 2420, 2725 |
| BseJI | GATNNNNATC | 1 cut(s) | 1191 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 115, 116, 417, 941, 1336, 1892, 2242 |
| BseMI | GCAATG | 3 cut(s) | 1497, 2087, 3098 |
| BseMII | CTCAG | 1 cut(s) | 2783 |
| BseNI | ACTGG | 8 cut(s) | 120, 438, 477, 743, 1096, 1973, 2798, 3237 |
| BseRI | GAGGAG | 1 cut(s) | 2672 |
| BseSI | GKGCMC | 2 cut(s) | 2219, 2739 |
| BseXI | GCAGC | 7 cut(s) | 183, 629, 1303, 1575, 2510, 2931, 3036 |
| BsgI | GTGCAG | 3 cut(s) | 684, 1987, 3035 |
| Bsh1236I | CGCG | 3 cut(s) | 255, 808, 2405 |
| BshFI | GGCC | 5 cut(s) | 48, 481, 1329, 1340, 1604 |
| BshTI | ACCGGT | 1 cut(s) | 1375 |
| BsiHKAI | GWGCWC | 4 cut(s) | 561, 1120, 1242, 2739 |
| BsiHKCI | CYCGRG | 1 cut(s) | 643 |
| BsiSI | CCGG | 5 cut(s) | 76, 644, 1113, 1376, 2680 |
| BslFI | GGGAC | 2 cut(s) | 92, 2915 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 115, 116, 417, 941, 1336, 1892, 2242 |
| BsmAI | GTCTC | 1 cut(s) | 2677 |
| BsmFI | GGGAC | 2 cut(s) | 92, 2915 |
| BsmI | GAATGC | 2 cut(s) | 1431, 2480 |
| BsnI | GGCC | 5 cut(s) | 48, 481, 1329, 1340, 1604 |
| BsoBI | CYCGRG | 1 cut(s) | 643 |
| Bsp119I | TTCGAA | 1 cut(s) | 567 |
| Bsp1286I | GDGCHC | 6 cut(s) | 561, 1120, 1242, 2219, 2739, 3155 |
| Bsp1407I | TGTACA | 1 cut(s) | 763 |
| Bsp19I | CCATGG | 1 cut(s) | 280 |
| BspACI | CCGC | 7 cut(s) | 253, 255, 648, 1561, 1574, 2169, 2520 |
| BspANI | GGCC | 5 cut(s) | 48, 481, 1329, 1340, 1604 |
| BspCNI | CTCAG | 1 cut(s) | 2782 |
| BspFNI | CGCG | 3 cut(s) | 255, 808, 2405 |
| BspLI | GGNNCC | 8 cut(s) | 71, 108, 371, 501, 1897, 2313, 2817, 3154 |
| BspMAI | CTGCAG | 2 cut(s) | 2371, 2528 |
| BspPI | GGATC | 9 cut(s) | 494, 507, 1857, 1890, 1903, 1968, 1977, 2945, 3045 |
| BspQI | GCTCTTC | 2 cut(s) | 1247, 2349 |
| BspT104I | TTCGAA | 1 cut(s) | 567 |
| BsrBI | CCGCTC | 1 cut(s) | 2520 |
| BsrDI | GCAATG | 3 cut(s) | 1497, 2087, 3098 |
| BsrFI | RCCGGY | 1 cut(s) | 1375 |
| BsrGI | TGTACA | 1 cut(s) | 763 |
| BsrI | ACTGG | 8 cut(s) | 120, 438, 477, 743, 1096, 1973, 2798, 3237 |
| BssAI | RCCGGY | 1 cut(s) | 1375 |
| BssECI | CCNNGG | 8 cut(s) | 74, 253, 280, 445, 643, 1209, 1341, 2954 |
| BssSI | CACGAG | 3 cut(s) | 759, 1226, 3249 |
| BssT1I | CCWWGG | 5 cut(s) | 280, 445, 1209, 1341, 2954 |
| Bst2BI | CACGAG | 3 cut(s) | 759, 1226, 3249 |
| Bst2UI | CCWGG | 3 cut(s) | 1695, 1847, 1956 |
| Bst4CI | ACNGT | 2 cut(s) | 2261, 2862 |
| Bst6I | CTCTTC | 6 cut(s) | 4, 369, 1247, 1647, 2349, 2753 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1396, 1645 |
| BstAUI | TGTACA | 1 cut(s) | 763 |
| BstBAI | YACGTR | 2 cut(s) | 2996, 3114 |
| BstBI | TTCGAA | 1 cut(s) | 567 |
| BstC8I | GCNNGC | 6 cut(s) | 46, 650, 1392, 1637, 2713, 2739 |
| BstDEI | CTNAG | 8 cut(s) | 265, 666, 784, 1297, 1837, 1853, 2769, 3144 |
| BstDSI | CCRYGG | 2 cut(s) | 253, 280 |
| BstF5I | GGATG | 9 cut(s) | 407, 433, 455, 1732, 1796, 2054, 2096, 2420, 2725 |
| BstFNI | CGCG | 3 cut(s) | 255, 808, 2405 |
| BstHHI | GCGC | 1 cut(s) | 810 |
| BstMAI | GTCTC | 1 cut(s) | 2677 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 396, 1396, 1645, 1699, 2084, 3100 |
| BstNI | CCWGG | 3 cut(s) | 1695, 1847, 1956 |
| BstNSI | RCATGY | 2 cut(s) | 1639, 3020 |
| BstSCI | CCNGG | 6 cut(s) | 74, 642, 643, 1693, 1845, 1954 |
| BstSFI | CTRYAG | 3 cut(s) | 1686, 2367, 2524 |
| BstSLI | GKGCMC | 2 cut(s) | 2219, 2739 |
| BstUI | CGCG | 3 cut(s) | 255, 808, 2405 |
| BstV1I | GCAGC | 7 cut(s) | 183, 629, 1303, 1575, 2510, 2931, 3036 |
| BstV2I | GAAGAC | 2 cut(s) | 851, 1529 |
| BstX2I | RGATCY | 8 cut(s) | 202, 499, 1816, 1849, 1895, 1973, 2158, 2950 |
| BstYI | RGATCY | 8 cut(s) | 202, 499, 1816, 1849, 1895, 1973, 2158, 2950 |
| BsuRI | GGCC | 5 cut(s) | 48, 481, 1329, 1340, 1604 |
| BtgI | CCRYGG | 2 cut(s) | 253, 280 |
| BtsCI | GGATG | 9 cut(s) | 407, 433, 455, 1732, 1796, 2054, 2096, 2420, 2725 |
| BtsI | GCAGTG | 1 cut(s) | 2073 |
| BtsIMutI | CAGTG | 3 cut(s) | 2073, 2325, 3244 |
| Cac8I | GCNNGC | 6 cut(s) | 46, 650, 1392, 1637, 2713, 2739 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1694, 2327 |
| CfoI | GCGC | 1 cut(s) | 810 |
| Cfr10I | RCCGGY | 1 cut(s) | 1375 |
| Cfr13I | GGNCC | 3 cut(s) | 106, 1093, 1603 |
| Cfr42I | CCGCGG | 1 cut(s) | 256 |
| Cfr9I | CCCGGG | 1 cut(s) | 643 |
| CseI | GACGC | 3 cut(s) | 1112, 2394, 3083 |
| Csp6I | GTAC | 3 cut(s) | 764, 1379, 2993 |
| CspAI | ACCGGT | 1 cut(s) | 1375 |
| CviQI | GTAC | 3 cut(s) | 764, 1379, 2993 |
| DdeI | CTNAG | 8 cut(s) | 265, 666, 784, 1297, 1837, 1853, 2769, 3144 |
| DraI | TTTAAA | 1 cut(s) | 1872 |
| EaeI | YGGCCR | 1 cut(s) | 479 |
| Eam1104I | CTCTTC | 6 cut(s) | 4, 369, 1247, 1647, 2349, 2753 |
| EarI | CTCTTC | 6 cut(s) | 4, 369, 1247, 1647, 2349, 2753 |
| Ecl136II | GAGCTC | 1 cut(s) | 1240 |
| Eco130I | CCWWGG | 5 cut(s) | 280, 445, 1209, 1341, 2954 |
| Eco147I | AGGCCT | 1 cut(s) | 1329 |
| Eco24I | GRGCYC | 2 cut(s) | 1242, 3155 |
| Eco32I | GATATC | 1 cut(s) | 2108 |
| Eco47I | GGWCC | 2 cut(s) | 106, 1093 |
| Eco53kI | GAGCTC | 1 cut(s) | 1240 |
| Eco57I | CTGAAG | 2 cut(s) | 1228, 1446 |
| Eco88I | CYCGRG | 1 cut(s) | 643 |
| EcoICRI | GAGCTC | 1 cut(s) | 1240 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1603 |
| EcoRI | GAATTC | 1 cut(s) | 2330 |
| EcoRII | CCWGG | 3 cut(s) | 1693, 1845, 1954 |
| EcoRV | GATATC | 1 cut(s) | 2108 |
| EcoT14I | CCWWGG | 5 cut(s) | 280, 445, 1209, 1341, 2954 |
| EcoT22I | ATGCAT | 2 cut(s) | 1641, 2480 |
| EcoT38I | GRGCYC | 2 cut(s) | 1242, 3155 |
| ErhI | CCWWGG | 5 cut(s) | 280, 445, 1209, 1341, 2954 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 81, 113 |
| FaqI | GGGAC | 2 cut(s) | 92, 2915 |
| FauI | CCCGC | 2 cut(s) | 641, 1581 |
| FauNDI | CATATG | 1 cut(s) | 328 |
| FbaI | TGATCA | 2 cut(s) | 298, 2935 |
| FblI | GTMKAC | 3 cut(s) | 16, 1372, 1685 |
| FokI | GGATG | 9 cut(s) | 394, 440, 462, 1739, 1803, 2041, 2083, 2407, 2732 |
| FriOI | GRGCYC | 2 cut(s) | 1242, 3155 |
| FspBI | CTAG | 8 cut(s) | 135, 947, 983, 1217, 1400, 1466, 1547, 1649 |
| GlaI | GCGC | 1 cut(s) | 809 |
| GsuI | CTGGAG | 3 cut(s) | 254, 1990, 2033 |
| HaeIII | GGCC | 5 cut(s) | 48, 481, 1329, 1340, 1604 |
| HapII | CCGG | 5 cut(s) | 76, 644, 1113, 1376, 2680 |
| HgaI | GACGC | 3 cut(s) | 1112, 2394, 3083 |
| HhaI | GCGC | 1 cut(s) | 810 |
| Hin6I | GCGC | 1 cut(s) | 808 |
| HinP1I | GCGC | 1 cut(s) | 808 |
| HincII | GTYRAC | 5 cut(s) | 952, 1915, 1966, 2193, 2497 |
| HindII | GTYRAC | 5 cut(s) | 952, 1915, 1966, 2193, 2497 |
| HindIII | AAGCTT | 1 cut(s) | 1907 |
| HpaI | GTTAAC | 1 cut(s) | 2193 |
| HpaII | CCGG | 5 cut(s) | 76, 644, 1113, 1376, 2680 |
| HphI | GGTGA | 4 cut(s) | 242, 406, 1874, 3226 |
| Hpy99I | CGWCG | 1 cut(s) | 2862 |
| HpyCH4III | ACNGT | 2 cut(s) | 2261, 2862 |
| HpyCH4IV | ACGT | 6 cut(s) | 510, 925, 1737, 2195, 2995, 3113 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 396, 1396, 1645, 1699, 2084, 3100 |
| HpyF3I | CTNAG | 8 cut(s) | 265, 666, 784, 1297, 1837, 1853, 2769, 3144 |
| HpySE526I | ACGT | 6 cut(s) | 510, 925, 1737, 2195, 2995, 3113 |
| HspAI | GCGC | 1 cut(s) | 808 |
| Ksp22I | TGATCA | 2 cut(s) | 298, 2935 |
| KspAI | GTTAAC | 1 cut(s) | 2193 |
| KspI | CCGCGG | 1 cut(s) | 256 |
| LguI | GCTCTTC | 2 cut(s) | 1247, 2349 |
| LmnI | GCTCC | 6 cut(s) | 375, 1115, 1940, 2311, 2629, 3158 |
| Lsp1109I | GCAGC | 7 cut(s) | 183, 629, 1303, 1575, 2510, 2931, 3036 |
| LweI | GCATC | 5 cut(s) | 115, 416, 1922, 2429, 2487 |
| MaeI | CTAG | 8 cut(s) | 135, 947, 983, 1217, 1400, 1466, 1547, 1649 |
| MaeII | ACGT | 6 cut(s) | 510, 925, 1737, 2195, 2995, 3113 |
| MaeIII | GTNAC | 4 cut(s) | 248, 308, 1556, 2261 |
| MbiI | CCGCTC | 1 cut(s) | 2520 |
| MfeI | CAATTG | 2 cut(s) | 876, 1251 |
| MflI | RGATCY | 8 cut(s) | 202, 499, 1816, 1849, 1895, 1973, 2158, 2950 |
| MhlI | GDGCHC | 6 cut(s) | 561, 1120, 1242, 2219, 2739, 3155 |
| MlsI | TGGCCA | 1 cut(s) | 481 |
| MluNI | TGGCCA | 1 cut(s) | 481 |
| MlyI | GAGTC | 6 cut(s) | 256, 1691, 2258, 2679, 3041, 3129 |
| MmeI | TCCRAC | 7 cut(s) | 204, 1499, 1873, 1962, 2094, 2484, 3015 |
| Mox20I | TGGCCA | 1 cut(s) | 481 |
| Mph1103I | ATGCAT | 2 cut(s) | 1641, 2480 |
| MroXI | GAANNNNTTC | 2 cut(s) | 435, 1431 |
| MscI | TGGCCA | 1 cut(s) | 481 |
| MseI | TTAA | 9 cut(s) | 35, 590, 687, 1067, 1778, 1871, 1926, 2115, 2192 |
| MslI | CAYNNNNRTG | 6 cut(s) | 306, 657, 1363, 1365, 1725, 2985 |
| Msp20I | TGGCCA | 1 cut(s) | 481 |
| MspA1I | CMGCKG | 1 cut(s) | 255 |
| MspI | CCGG | 5 cut(s) | 76, 644, 1113, 1376, 2680 |
| MspR9I | CCNGG | 6 cut(s) | 76, 644, 645, 1695, 1847, 1956 |
| MunI | CAATTG | 2 cut(s) | 876, 1251 |
| Mva1269I | GAATGC | 2 cut(s) | 1431, 2480 |
| MvaI | CCWGG | 3 cut(s) | 1695, 1847, 1956 |
| MvnI | CGCG | 3 cut(s) | 255, 808, 2405 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 396, 1396, 1645, 1699, 2084, 3100 |
| NciI | CCSGG | 3 cut(s) | 76, 644, 645 |
| NcoI | CCATGG | 1 cut(s) | 280 |
| NdeI | CATATG | 1 cut(s) | 328 |
| NlaIV | GGNNCC | 8 cut(s) | 71, 108, 371, 501, 1897, 2313, 2817, 3154 |
| NmuCI | GTSAC | 4 cut(s) | 248, 308, 1556, 2261 |
| NsiI | ATGCAT | 2 cut(s) | 1641, 2480 |
| NspI | RCATGY | 2 cut(s) | 1639, 3020 |
| NspV | TTCGAA | 1 cut(s) | 567 |
| PaeI | GCATGC | 1 cut(s) | 1639 |
| PceI | AGGCCT | 1 cut(s) | 1329 |
| PciI | ACATGT | 1 cut(s) | 3016 |
| PciSI | GCTCTTC | 2 cut(s) | 1247, 2349 |
| PctI | GAATGC | 2 cut(s) | 1431, 2480 |
| PdmI | GAANNNNTTC | 2 cut(s) | 435, 1431 |
| PflFI | GACNNNGTC | 1 cut(s) | 2688 |
| PfoI | TCCNGGA | 1 cut(s) | 1845 |
| PinAI | ACCGGT | 1 cut(s) | 1375 |
| PleI | GAGTC | 6 cut(s) | 255, 1690, 2258, 2679, 3040, 3128 |
| PpsI | GAGTC | 6 cut(s) | 255, 1690, 2258, 2679, 3040, 3128 |
| Ppu21I | YACGTR | 2 cut(s) | 2996, 3114 |
| PscI | ACATGT | 1 cut(s) | 3016 |
| Psp124BI | GAGCTC | 1 cut(s) | 1242 |
| Psp1406I | AACGTT | 1 cut(s) | 925 |
| Psp6I | CCWGG | 3 cut(s) | 1693, 1845, 1954 |
| PspGI | CCWGG | 3 cut(s) | 1693, 1845, 1954 |
| PspN4I | GGNNCC | 8 cut(s) | 71, 108, 371, 501, 1897, 2313, 2817, 3154 |
| PspPI | GGNCC | 3 cut(s) | 106, 1093, 1603 |
| PstI | CTGCAG | 2 cut(s) | 2371, 2528 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1694, 2327 |
| PsuI | RGATCY | 8 cut(s) | 202, 499, 1816, 1849, 1895, 1973, 2158, 2950 |
| PsyI | GACNNNGTC | 1 cut(s) | 2688 |
| RsaI | GTAC | 3 cut(s) | 765, 1380, 2994 |
| RsaNI | GTAC | 3 cut(s) | 764, 1379, 2993 |
| RseI | CAYNNNNRTG | 6 cut(s) | 306, 657, 1363, 1365, 1725, 2985 |
| SacI | GAGCTC | 1 cut(s) | 1242 |
| SacII | CCGCGG | 1 cut(s) | 256 |
| SapI | GCTCTTC | 2 cut(s) | 1247, 2349 |
| SaqAI | TTAA | 9 cut(s) | 35, 590, 687, 1067, 1778, 1871, 1926, 2115, 2192 |
| Sau96I | GGNCC | 3 cut(s) | 106, 1093, 1603 |
| SchI | GAGTC | 6 cut(s) | 256, 1691, 2258, 2679, 3041, 3129 |
| ScrFI | CCNGG | 6 cut(s) | 76, 644, 645, 1695, 1847, 1956 |
| SduI | GDGCHC | 6 cut(s) | 561, 1120, 1242, 2219, 2739, 3155 |
| SfaNI | GCATC | 5 cut(s) | 115, 416, 1922, 2429, 2487 |
| SfcI | CTRYAG | 3 cut(s) | 1686, 2367, 2524 |
| Sfr303I | CCGCGG | 1 cut(s) | 256 |
| SfuI | TTCGAA | 1 cut(s) | 567 |
| SgrBI | CCGCGG | 1 cut(s) | 256 |
| SinI | GGWCC | 2 cut(s) | 106, 1093 |
| SmaI | CCCGGG | 1 cut(s) | 645 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 306, 657, 1363, 1365, 1725, 2985 |
| SmlI | CTYRAG | 3 cut(s) | 98, 1323, 2059 |
| SmoI | CTYRAG | 3 cut(s) | 98, 1323, 2059 |
| SphI | GCATGC | 1 cut(s) | 1639 |
| SseBI | AGGCCT | 1 cut(s) | 1329 |
| SsiI | CCGC | 7 cut(s) | 253, 255, 648, 1561, 1574, 2169, 2520 |
| SspI | AATATT | 2 cut(s) | 1420, 2392 |
| SspMI | CTAG | 8 cut(s) | 135, 947, 983, 1217, 1400, 1466, 1547, 1649 |
| SstI | GAGCTC | 1 cut(s) | 1242 |
| StuI | AGGCCT | 1 cut(s) | 1329 |
| StyD4I | CCNGG | 6 cut(s) | 74, 642, 643, 1693, 1845, 1954 |
| StyI | CCWWGG | 5 cut(s) | 280, 445, 1209, 1341, 2954 |
| TaaI | ACNGT | 2 cut(s) | 2261, 2862 |
| TaiI | ACGT | 6 cut(s) | 513, 928, 1740, 2198, 2998, 3116 |
| TaqI | TCGA | 9 cut(s) | 567, 1494, 1995, 2122, 2146, 2273, 2511, 2857, 3118 |
| TatI | WGTACW | 1 cut(s) | 763 |
| TauI | GCSGC | 3 cut(s) | 258, 2172, 2523 |
| Tru1I | TTAA | 9 cut(s) | 35, 590, 687, 1067, 1778, 1871, 1926, 2115, 2192 |
| Tru9I | TTAA | 9 cut(s) | 35, 590, 687, 1067, 1778, 1871, 1926, 2115, 2192 |
| TscAI | CASTG | 3 cut(s) | 2080, 2332, 3244 |
| TseFI | GTSAC | 4 cut(s) | 248, 308, 1556, 2261 |
| TseI | GCWGC | 7 cut(s) | 196, 617, 1291, 1563, 2523, 2944, 3049 |
| Tsp45I | GTSAC | 4 cut(s) | 248, 308, 1556, 2261 |
| TspGWI | ACGGA | 4 cut(s) | 919, 2398, 2678, 3209 |
| TspMI | CCCGGG | 1 cut(s) | 643 |
| TspRI | CASTG | 3 cut(s) | 2080, 2332, 3244 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2688 |
| VneI | GTGCAC | 1 cut(s) | 2735 |
| VpaK11BI | GGWCC | 2 cut(s) | 106, 1093 |
| XceI | RCATGY | 2 cut(s) | 1639, 3020 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 287 |
| XmaI | CCCGGG | 1 cut(s) | 643 |
| XmiI | GTMKAC | 3 cut(s) | 16, 1372, 1685 |
| XmnI | GAANNNNTTC | 2 cut(s) | 435, 1431 |
| XspI | CTAG | 8 cut(s) | 135, 947, 983, 1217, 1400, 1466, 1547, 1649 |
| Zsp2I | ATGCAT | 2 cut(s) | 1641, 2480 |