TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 23 - 188 | 1.4e-53 | TIR domain |
| TIR_2 | PF13676 | 25 - 120 | 3.9e-12 | TIR domain |
| NB-ARC | PF00931 | 207 - 375 | 2.1e-20 | NB-ARC domain |
| NACHT | PF05729 | 221 - 370 | 2.6e-06 | NACHT domain |
| WHD_ROQ1 | PF23282 | 445 - 513 | 5.1e-14 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 694 - 785 | 2e-09 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 704 - 897 | 8.1e-23 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1304 |
| Acc36I | ACCTGC | 2 cut(s) | 813, 2301 |
| AccI | GTMKAC | 1 cut(s) | 2110 |
| AccII | CGCG | 1 cut(s) | 891 |
| AciI | CCGC | 2 cut(s) | 504, 990 |
| AclWI | GGATC | 4 cut(s) | 158, 232, 350, 1143 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcuI | CTGAAG | 2 cut(s) | 762, 1084 |
| AcyI | GRCGYC | 1 cut(s) | 3212 |
| AdeI | CACNNNGTG | 1 cut(s) | 3241 |
| AfaI | GTAC | 6 cut(s) | 509, 615, 657, 1335, 1477, 3234 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 791, 2024, 2374, 3322, 3354 |
| AflIII | ACRYGT | 1 cut(s) | 3173 |
| AgeI | ACCGGT | 1 cut(s) | 53 |
| AhlI | ACTAGT | 1 cut(s) | 289 |
| AjiI | CACGTC | 1 cut(s) | 3062 |
| AjnI | CCWGG | 4 cut(s) | 660, 1549, 2854, 3321 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 263, 295, 961, 993 |
| AleI | CACNNNNGTG | 1 cut(s) | 1986 |
| Alw21I | GWGCWC | 1 cut(s) | 1098 |
| Alw26I | GTCTC | 4 cut(s) | 895, 1139, 1800, 2728 |
| AlwI | GGATC | 4 cut(s) | 158, 232, 350, 1143 |
| Ama87I | CYCGRG | 1 cut(s) | 1427 |
| AoxI | GGCC | 5 cut(s) | 3, 335, 1414, 1458, 1781 |
| ApeKI | GCWGC | 5 cut(s) | 473, 1645, 2301, 2577, 3109 |
| AseI | ATTAAT | 1 cut(s) | 2247 |
| AsiGI | ACCGGT | 1 cut(s) | 53 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 291 |
| AspLEI | GCGC | 3 cut(s) | 891, 1590, 3020 |
| AspS9I | GGNCC | 2 cut(s) | 1063, 1459 |
| AsuHPI | GGTGA | 6 cut(s) | 404, 1088, 1530, 1973, 2006, 2039 |
| AvaI | CYCGRG | 1 cut(s) | 1427 |
| AvaII | GGWCC | 1 cut(s) | 1063 |
| BaeGI | GKGCMC | 1 cut(s) | 3071 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanII | GRGCYC | 1 cut(s) | 1098 |
| BbsI | GAAGAC | 1 cut(s) | 3264 |
| Bbv12I | GWGCWC | 1 cut(s) | 1098 |
| BbvI | GCAGC | 5 cut(s) | 460, 1632, 2313, 2564, 3096 |
| BccI | CCATC | 9 cut(s) | 444, 483, 847, 1310, 1868, 2219, 2617, 2707, 2752 |
| BceAI | ACGGC | 1 cut(s) | 1792 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 242, 276 |
| BciT130I | CCWGG | 4 cut(s) | 662, 1551, 2856, 3323 |
| BciVI | GTATCC | 1 cut(s) | 91 |
| BclI | TGATCA | 4 cut(s) | 1078, 2703, 2986, 3097 |
| BcoDI | GTCTC | 4 cut(s) | 895, 1139, 1800, 2728 |
| BcuI | ACTAGT | 1 cut(s) | 289 |
| BfmI | CTRYAG | 2 cut(s) | 2424, 3364 |
| BfuAI | ACCTGC | 2 cut(s) | 813, 2301 |
| BfuI | GTATCC | 1 cut(s) | 91 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 666 |
| BisI | GCNGC | 6 cut(s) | 474, 991, 1646, 2302, 2578, 3110 |
| BlsI | GCNGC | 6 cut(s) | 475, 992, 1647, 2303, 2579, 3111 |
| Bme1390I | CCNGG | 4 cut(s) | 662, 1551, 2856, 3323 |
| Bme18I | GGWCC | 1 cut(s) | 1063 |
| BmeT110I | CYCGRG | 1 cut(s) | 1427 |
| BmgBI | CACGTC | 1 cut(s) | 3062 |
| BmgT120I | GGNCC | 2 cut(s) | 1063, 1459 |
| BmrFI | CCNGG | 4 cut(s) | 662, 1551, 2856, 3323 |
| BmrI | ACTGGG | 2 cut(s) | 1752, 3340 |
| BmsI | GCATC | 7 cut(s) | 272, 1033, 2070, 2423, 2486, 2544, 3376 |
| BmuI | ACTGGG | 2 cut(s) | 1752, 3340 |
| BpiI | GAAGAC | 1 cut(s) | 3264 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 445, 477 |
| BpmI | CTGGAG | 4 cut(s) | 1220, 2122, 2165, 2752 |
| BpuEI | CTTGAG | 3 cut(s) | 1690, 2054, 2590 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaAI | YACGTR | 1 cut(s) | 3174 |
| BsaBI | GATNNNNATC | 2 cut(s) | 454, 1023 |
| BsaHI | GRCGYC | 1 cut(s) | 3212 |
| BsaJI | CCNNGG | 2 cut(s) | 1984, 2405 |
| BsaWI | WCCGGW | 1 cut(s) | 53 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 783, 813, 2725, 2755 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 791, 2024, 2374, 3322, 3354 |
| Bse118I | RCCGGY | 1 cut(s) | 53 |
| Bse1I | ACTGG | 9 cut(s) | 949, 1203, 1615, 1758, 1784, 2105, 3158, 3335, 3399 |
| Bse3DI | GCAATG | 2 cut(s) | 1353, 2648 |
| Bse8I | GATNNNNATC | 2 cut(s) | 454, 1023 |
| BseBI | CCWGG | 4 cut(s) | 662, 1551, 2856, 3323 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseDI | CCNNGG | 2 cut(s) | 1984, 2405 |
| BseGI | GGATG | 6 cut(s) | 289, 494, 1997, 2069, 2438, 2477 |
| BseJI | GATNNNNATC | 2 cut(s) | 454, 1023 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 791, 2024, 2374, 3322, 3354 |
| BseMI | GCAATG | 2 cut(s) | 1353, 2648 |
| BseMII | CTCAG | 6 cut(s) | 5, 375, 507, 2371, 2624, 3221 |
| BseNI | ACTGG | 9 cut(s) | 949, 1203, 1615, 1758, 1784, 2105, 3158, 3335, 3399 |
| BseRI | GAGGAG | 2 cut(s) | 198, 3370 |
| BseSI | GKGCMC | 1 cut(s) | 3071 |
| BseXI | GCAGC | 5 cut(s) | 460, 1632, 2313, 2564, 3096 |
| Bsh1236I | CGCG | 1 cut(s) | 891 |
| BshFI | GGCC | 5 cut(s) | 5, 337, 1416, 1460, 1783 |
| BshTI | ACCGGT | 1 cut(s) | 53 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1098 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1427 |
| BsiSI | CCGG | 1 cut(s) | 54 |
| BslFI | GGGAC | 3 cut(s) | 1842, 2651, 3330 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 791, 2024, 2374, 3322, 3354 |
| BsmAI | GTCTC | 4 cut(s) | 895, 1139, 1800, 2728 |
| BsmBI | CGTCTC | 1 cut(s) | 1800 |
| BsmFI | GGGAC | 3 cut(s) | 1842, 2651, 3330 |
| BsmI | GAATGC | 1 cut(s) | 2537 |
| BsnI | GGCC | 5 cut(s) | 5, 337, 1416, 1460, 1783 |
| BsoBI | CYCGRG | 1 cut(s) | 1427 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1098, 3071 |
| BspACI | CCGC | 2 cut(s) | 504, 990 |
| BspANI | GGCC | 5 cut(s) | 5, 337, 1416, 1460, 1783 |
| BspCNI | CTCAG | 6 cut(s) | 6, 374, 508, 2370, 2625, 3220 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspFNI | CGCG | 1 cut(s) | 891 |
| BspHI | TCATGA | 2 cut(s) | 1081, 1090 |
| BspMAI | CTGCAG | 2 cut(s) | 2428, 3368 |
| BspMI | ACCTGC | 2 cut(s) | 813, 2301 |
| BspPI | GGATC | 4 cut(s) | 158, 232, 350, 1143 |
| BspQI | GCTCTTC | 1 cut(s) | 1103 |
| BsrDI | GCAATG | 2 cut(s) | 1353, 2648 |
| BsrFI | RCCGGY | 1 cut(s) | 53 |
| BsrI | ACTGG | 9 cut(s) | 949, 1203, 1615, 1758, 1784, 2105, 3158, 3335, 3399 |
| BssAI | RCCGGY | 1 cut(s) | 53 |
| BssECI | CCNNGG | 2 cut(s) | 1984, 2405 |
| BssNI | GRCGYC | 1 cut(s) | 3212 |
| BssT1I | CCWWGG | 2 cut(s) | 1984, 2405 |
| Bst2UI | CCWGG | 4 cut(s) | 662, 1551, 2856, 3323 |
| Bst4CI | ACNGT | 5 cut(s) | 308, 1152, 1333, 2739, 2913 |
| Bst6I | CTCTTC | 8 cut(s) | 40, 534, 1103, 2250, 2610, 2810, 2854, 3084 |
| BstACI | GRCGYC | 1 cut(s) | 3212 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1498 |
| BstBAI | YACGTR | 1 cut(s) | 3174 |
| BstC8I | GCNNGC | 3 cut(s) | 1248, 1490, 1892 |
| BstDEI | CTNAG | 8 cut(s) | 14, 80, 361, 516, 825, 2357, 2633, 3207 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3320 |
| BstF5I | GGATG | 6 cut(s) | 289, 494, 1997, 2069, 2438, 2477 |
| BstFNI | CGCG | 1 cut(s) | 891 |
| BstHHI | GCGC | 3 cut(s) | 891, 1590, 3020 |
| BstMAI | GTCTC | 4 cut(s) | 895, 1139, 1800, 2728 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 666, 1498, 1780 |
| BstNI | CCWGG | 4 cut(s) | 662, 1551, 2856, 3323 |
| BstNSI | RCATGY | 3 cut(s) | 1362, 1492, 2267 |
| BstSCI | CCNGG | 4 cut(s) | 660, 1549, 2854, 3321 |
| BstSFI | CTRYAG | 2 cut(s) | 2424, 3364 |
| BstSLI | GKGCMC | 1 cut(s) | 3071 |
| BstUI | CGCG | 1 cut(s) | 891 |
| BstV1I | GCAGC | 5 cut(s) | 460, 1632, 2313, 2564, 3096 |
| BstV2I | GAAGAC | 1 cut(s) | 3264 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuI | GTATCC | 1 cut(s) | 91 |
| BsuRI | GGCC | 5 cut(s) | 5, 337, 1416, 1460, 1783 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtrI | CACGTC | 1 cut(s) | 3062 |
| BtsCI | GGATG | 6 cut(s) | 289, 494, 1997, 2069, 2438, 2477 |
| BtsI | GCAGTG | 2 cut(s) | 2205, 2421 |
| BtsIMutI | CAGTG | 9 cut(s) | 1148, 1196, 1608, 1765, 2098, 2205, 2421, 3165, 3200 |
| BveI | ACCTGC | 2 cut(s) | 813, 2301 |
| Cac8I | GCNNGC | 3 cut(s) | 1248, 1490, 1892 |
| CciI | TCATGA | 2 cut(s) | 1081, 1090 |
| CfoI | GCGC | 3 cut(s) | 891, 1590, 3020 |
| Cfr10I | RCCGGY | 1 cut(s) | 53 |
| Cfr13I | GGNCC | 2 cut(s) | 1063, 1459 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| CseI | GACGC | 1 cut(s) | 3201 |
| Csp6I | GTAC | 6 cut(s) | 508, 614, 656, 1334, 1476, 3233 |
| CspAI | ACCGGT | 1 cut(s) | 53 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2358, 2393, 3208, 3243 |
| CviQI | GTAC | 6 cut(s) | 508, 614, 656, 1334, 1476, 3233 |
| DdeI | CTNAG | 8 cut(s) | 14, 80, 361, 516, 825, 2357, 2633, 3207 |
| DraI | TTTAAA | 2 cut(s) | 742, 1267 |
| DraIII | CACNNNGTG | 1 cut(s) | 3241 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 8 cut(s) | 40, 534, 1103, 2250, 2610, 2810, 2854, 3084 |
| EarI | CTCTTC | 8 cut(s) | 40, 534, 1103, 2250, 2610, 2810, 2854, 3084 |
| Ecl136II | GAGCTC | 1 cut(s) | 1096 |
| Eco130I | CCWWGG | 2 cut(s) | 1984, 2405 |
| Eco24I | GRGCYC | 1 cut(s) | 1098 |
| Eco47I | GGWCC | 1 cut(s) | 1063 |
| Eco53kI | GAGCTC | 1 cut(s) | 1096 |
| Eco57I | CTGAAG | 2 cut(s) | 762, 1084 |
| Eco88I | CYCGRG | 1 cut(s) | 1427 |
| EcoICRI | GAGCTC | 1 cut(s) | 1096 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3320 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1459 |
| EcoRI | GAATTC | 2 cut(s) | 1928, 2387 |
| EcoRII | CCWGG | 4 cut(s) | 660, 1549, 2854, 3321 |
| EcoT14I | CCWWGG | 2 cut(s) | 1984, 2405 |
| EcoT22I | ATGCAT | 3 cut(s) | 265, 1494, 2537 |
| EcoT38I | GRGCYC | 1 cut(s) | 1098 |
| ErhI | CCWWGG | 2 cut(s) | 1984, 2405 |
| Esp3I | CGTCTC | 1 cut(s) | 1800 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 609, 641, 1284, 1316, 1332, 1364 |
| FaqI | GGGAC | 3 cut(s) | 1842, 2651, 3330 |
| FauI | CCCGC | 1 cut(s) | 497 |
| FauNDI | CATATG | 2 cut(s) | 671, 1108 |
| FbaI | TGATCA | 4 cut(s) | 1078, 2703, 2986, 3097 |
| FblI | GTMKAC | 1 cut(s) | 2110 |
| Fnu4HI | GCNGC | 6 cut(s) | 474, 991, 1646, 2302, 2578, 3110 |
| FokI | GGATG | 6 cut(s) | 296, 501, 2004, 2076, 2445, 2464 |
| FriOI | GRGCYC | 1 cut(s) | 1098 |
| Fsp4HI | GCNGC | 6 cut(s) | 474, 991, 1646, 2302, 2578, 3110 |
| GlaI | GCGC | 3 cut(s) | 890, 1589, 3019 |
| GluI | GCNGC | 6 cut(s) | 474, 991, 1646, 2302, 2578, 3110 |
| GsuI | CTGGAG | 4 cut(s) | 1220, 2122, 2165, 2752 |
| HaeIII | GGCC | 5 cut(s) | 5, 337, 1416, 1460, 1783 |
| HapII | CCGG | 1 cut(s) | 54 |
| HgaI | GACGC | 1 cut(s) | 3201 |
| HhaI | GCGC | 3 cut(s) | 891, 1590, 3020 |
| Hin1I | GRCGYC | 1 cut(s) | 3212 |
| Hin6I | GCGC | 3 cut(s) | 889, 1588, 3018 |
| HinP1I | GCGC | 3 cut(s) | 889, 1588, 3018 |
| HincII | GTYRAC | 3 cut(s) | 643, 802, 2551 |
| HindII | GTYRAC | 3 cut(s) | 643, 802, 2551 |
| HindIII | AAGCTT | 1 cut(s) | 774 |
| HpaII | CCGG | 1 cut(s) | 54 |
| HphI | GGTGA | 6 cut(s) | 404, 1088, 1530, 1973, 2006, 2039 |
| Hpy166II | GTNNAC | 9 cut(s) | 643, 718, 802, 2047, 2098, 2111, 2421, 2551, 3235 |
| Hpy8I | GTNNAC | 9 cut(s) | 643, 718, 802, 2047, 2098, 2111, 2421, 2551, 3235 |
| Hpy99I | CGWCG | 2 cut(s) | 271, 2913 |
| HpyCH4III | ACNGT | 5 cut(s) | 308, 1152, 1333, 2739, 2913 |
| HpyCH4IV | ACGT | 6 cut(s) | 366, 1719, 3061, 3150, 3173, 3261 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 666, 1498, 1780 |
| HpyF3I | CTNAG | 8 cut(s) | 14, 80, 361, 516, 825, 2357, 2633, 3207 |
| HpySE526I | ACGT | 6 cut(s) | 366, 1719, 3061, 3150, 3173, 3261 |
| Hsp92I | GRCGYC | 1 cut(s) | 3212 |
| HspAI | GCGC | 3 cut(s) | 889, 1588, 3018 |
| Ksp22I | TGATCA | 4 cut(s) | 1078, 2703, 2986, 3097 |
| LguI | GCTCTTC | 1 cut(s) | 1103 |
| LmnI | GCTCC | 3 cut(s) | 677, 2683, 3357 |
| Lsp1109I | GCAGC | 5 cut(s) | 460, 1632, 2313, 2564, 3096 |
| LweI | GCATC | 7 cut(s) | 272, 1033, 2070, 2423, 2486, 2544, 3376 |
| MaeII | ACGT | 6 cut(s) | 366, 1719, 3061, 3150, 3173, 3261 |
| MaeIII | GTNAC | 4 cut(s) | 1254, 2397, 3146, 3181 |
| MfeI | CAATTG | 1 cut(s) | 2232 |
| MhlI | GDGCHC | 2 cut(s) | 1098, 3071 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 6 cut(s) | 521, 1681, 1864, 2022, 2556, 3101 |
| MmeI | TCCRAC | 7 cut(s) | 1355, 1709, 1836, 2624, 2772, 2815, 3336 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| Mph1103I | ATGCAT | 3 cut(s) | 265, 1494, 2537 |
| MroXI | GAANNNNTTC | 1 cut(s) | 291 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1219, 1581, 1986, 3042 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 1 cut(s) | 54 |
| MspR9I | CCNGG | 4 cut(s) | 662, 1551, 2856, 3323 |
| MunI | CAATTG | 1 cut(s) | 2232 |
| Mva1269I | GAATGC | 1 cut(s) | 2537 |
| MvaI | CCWGG | 4 cut(s) | 662, 1551, 2856, 3323 |
| MvnI | CGCG | 1 cut(s) | 891 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 666, 1498, 1780 |
| NdeI | CATATG | 2 cut(s) | 671, 1108 |
| NmuCI | GTSAC | 2 cut(s) | 2397, 3181 |
| NsiI | ATGCAT | 3 cut(s) | 265, 1494, 2537 |
| NspI | RCATGY | 3 cut(s) | 1362, 1492, 2267 |
| OliI | CACNNNNGTG | 1 cut(s) | 1986 |
| PaeI | GCATGC | 1 cut(s) | 1492 |
| PagI | TCATGA | 2 cut(s) | 1081, 1090 |
| PciSI | GCTCTTC | 1 cut(s) | 1103 |
| PctI | GAATGC | 1 cut(s) | 2537 |
| PdmI | GAANNNNTTC | 1 cut(s) | 291 |
| PflFI | GACNNNGTC | 1 cut(s) | 1150 |
| PfoI | TCCNGGA | 1 cut(s) | 2854 |
| PinAI | ACCGGT | 1 cut(s) | 53 |
| PkrI | GCNGC | 6 cut(s) | 475, 992, 1647, 2303, 2579, 3111 |
| PleI | GAGTC | 6 cut(s) | 520, 1680, 1863, 2022, 2556, 3100 |
| PpsI | GAGTC | 6 cut(s) | 520, 1680, 1863, 2022, 2556, 3100 |
| Ppu21I | YACGTR | 1 cut(s) | 3174 |
| PshBI | ATTAAT | 1 cut(s) | 2247 |
| PsiI | TTATAA | 1 cut(s) | 1304 |
| Psp124BI | GAGCTC | 1 cut(s) | 1098 |
| Psp6I | CCWGG | 4 cut(s) | 660, 1549, 2854, 3321 |
| PspGI | CCWGG | 4 cut(s) | 660, 1549, 2854, 3321 |
| PspPI | GGNCC | 2 cut(s) | 1063, 1459 |
| PstI | CTGCAG | 2 cut(s) | 2428, 3368 |
| PsyI | GACNNNGTC | 1 cut(s) | 1150 |
| RsaI | GTAC | 6 cut(s) | 509, 615, 657, 1335, 1477, 3234 |
| RsaNI | GTAC | 6 cut(s) | 508, 614, 656, 1334, 1476, 3233 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1219, 1581, 1986, 3042 |
| SacI | GAGCTC | 1 cut(s) | 1098 |
| SapI | GCTCTTC | 1 cut(s) | 1103 |
| SatI | GCNGC | 6 cut(s) | 474, 991, 1646, 2302, 2578, 3110 |
| Sau96I | GGNCC | 2 cut(s) | 1063, 1459 |
| SchI | GAGTC | 6 cut(s) | 521, 1681, 1864, 2022, 2556, 3101 |
| ScrFI | CCNGG | 4 cut(s) | 662, 1551, 2856, 3323 |
| SduI | GDGCHC | 2 cut(s) | 1098, 3071 |
| SfaNI | GCATC | 7 cut(s) | 272, 1033, 2070, 2423, 2486, 2544, 3376 |
| SfcI | CTRYAG | 2 cut(s) | 2424, 3364 |
| SinI | GGWCC | 1 cut(s) | 1063 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1219, 1581, 1986, 3042 |
| SmlI | CTYRAG | 3 cut(s) | 1669, 2033, 2569 |
| SmoI | CTYRAG | 3 cut(s) | 1669, 2033, 2569 |
| SpeI | ACTAGT | 1 cut(s) | 289 |
| SphI | GCATGC | 1 cut(s) | 1492 |
| SsiI | CCGC | 2 cut(s) | 504, 990 |
| SspI | AATATT | 1 cut(s) | 1802 |
| SstI | GAGCTC | 1 cut(s) | 1098 |
| StyD4I | CCNGG | 4 cut(s) | 660, 1549, 2854, 3321 |
| StyI | CCWWGG | 2 cut(s) | 1984, 2405 |
| TaaI | ACNGT | 5 cut(s) | 308, 1152, 1333, 2739, 2913 |
| TaiI | ACGT | 6 cut(s) | 369, 1722, 3064, 3153, 3176, 3264 |
| TatI | WGTACW | 3 cut(s) | 613, 1333, 3232 |
| TauI | GCSGC | 1 cut(s) | 993 |
| TscAI | CASTG | 9 cut(s) | 1155, 1203, 1615, 1765, 2105, 2212, 2428, 3165, 3200 |
| TseFI | GTSAC | 2 cut(s) | 2397, 3181 |
| TseI | GCWGC | 5 cut(s) | 473, 1645, 2301, 2577, 3109 |
| Tsp45I | GTSAC | 2 cut(s) | 2397, 3181 |
| TspGWI | ACGGA | 2 cut(s) | 1782, 3143 |
| TspRI | CASTG | 9 cut(s) | 1155, 1203, 1615, 1765, 2105, 2212, 2428, 3165, 3200 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1150 |
| VpaK11BI | GGWCC | 1 cut(s) | 1063 |
| VspI | ATTAAT | 1 cut(s) | 2247 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3320 |
| XbaI | TCTAGA | 2 cut(s) | 601, 608 |
| XceI | RCATGY | 3 cut(s) | 1362, 1492, 2267 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1971 |
| XmiI | GTMKAC | 1 cut(s) | 2110 |
| XmnI | GAANNNNTTC | 1 cut(s) | 291 |
| Zsp2I | ATGCAT | 3 cut(s) | 265, 1494, 2537 |