TMV resistance protein N-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1724 |
| AccII | CGCG | 2 cut(s) | 2618, 2730 |
| AciI | CCGC | 6 cut(s) | 898, 996, 1777, 1802, 1867, 2730 |
| AclI | AACGTT | 2 cut(s) | 2267, 3246 |
| AcoI | YGGCCR | 2 cut(s) | 3, 338 |
| AcuI | CTGAAG | 2 cut(s) | 2174, 2415 |
| AdeI | CACNNNGTG | 1 cut(s) | 73 |
| AfaI | GTAC | 4 cut(s) | 627, 669, 2005, 2056 |
| AfeI | AGCGCT | 1 cut(s) | 1203 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 276, 1289, 2033, 2365, 2383 |
| AflIII | ACRYGT | 1 cut(s) | 3344 |
| AhlI | ACTAGT | 1 cut(s) | 292 |
| AjnI | CCWGG | 2 cut(s) | 1558, 2738 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3107, 3139 |
| AleI | CACNNNNGTG | 1 cut(s) | 1225 |
| Alw21I | GWGCWC | 1 cut(s) | 2078 |
| Alw26I | GTCTC | 3 cut(s) | 2452, 2494, 2887 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2540 |
| Ama87I | CYCGRG | 1 cut(s) | 505 |
| Aor51HI | AGCGCT | 1 cut(s) | 1203 |
| AoxI | GGCC | 5 cut(s) | 3, 338, 1189, 1464, 1790 |
| ApeKI | GCWGC | 6 cut(s) | 479, 1569, 1863, 2310, 2733, 3277 |
| AseI | ATTAAT | 1 cut(s) | 2130 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 207, 294, 2400 |
| AspLEI | GCGC | 4 cut(s) | 1204, 1569, 2557, 2730 |
| AspS9I | GGNCC | 3 cut(s) | 955, 1465, 3511 |
| AsuHPI | GGTGA | 6 cut(s) | 407, 1490, 2015, 2486, 3380, 3457 |
| AsuII | TTCGAA | 1 cut(s) | 2819 |
| AvaI | CYCGRG | 1 cut(s) | 505 |
| AvaII | GGWCC | 2 cut(s) | 955, 3511 |
| BaeGI | GKGCMC | 1 cut(s) | 2360 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BamHI | GGATCC | 2 cut(s) | 358, 2036 |
| BanII | GRGCYC | 1 cut(s) | 3377 |
| BauI | CACGAG | 2 cut(s) | 621, 2084 |
| BbsI | GAAGAC | 2 cut(s) | 713, 3435 |
| Bbv12I | GWGCWC | 1 cut(s) | 2078 |
| BbvI | GCAGC | 6 cut(s) | 491, 1581, 1875, 2322, 2720, 3264 |
| BccI | CCATC | 6 cut(s) | 370, 450, 1259, 2866, 2911, 3102 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1756, 1790 |
| BciT130I | CCWGG | 2 cut(s) | 1560, 2740 |
| BciVI | GTATCC | 1 cut(s) | 91 |
| BclI | TGATCA | 2 cut(s) | 3145, 3496 |
| BcoDI | GTCTC | 3 cut(s) | 2452, 2494, 2887 |
| BcuI | ACTAGT | 1 cut(s) | 292 |
| BfaI | CTAG | 9 cut(s) | 293, 845, 1079, 1440, 1511, 1659, 1943, 2567, 3517 |
| BfoI | RGCGCY | 2 cut(s) | 1205, 2558 |
| BfuI | GTATCC | 1 cut(s) | 91 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1564 |
| BglII | AGATCT | 2 cut(s) | 1666, 2299 |
| BisI | GCNGC | 9 cut(s) | 480, 997, 1570, 1864, 1867, 2311, 2731, 2734, 3278 |
| BlsI | GCNGC | 9 cut(s) | 481, 998, 1571, 1865, 1868, 2312, 2732, 2735, 3279 |
| Bme1390I | CCNGG | 2 cut(s) | 1560, 2740 |
| Bme18I | GGWCC | 2 cut(s) | 955, 3511 |
| BmeT110I | CYCGRG | 1 cut(s) | 505 |
| BmgT120I | GGNCC | 3 cut(s) | 955, 1465, 3511 |
| BmiI | GGNNCC | 4 cut(s) | 360, 2038, 2526, 3027 |
| BmrFI | CCNGG | 2 cut(s) | 1560, 2740 |
| BmsI | GCATC | 8 cut(s) | 275, 1312, 1644, 1878, 2229, 2322, 2642, 3073 |
| BpiI | GAAGAC | 2 cut(s) | 713, 3435 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 451, 483 |
| BpmI | CTGGAG | 2 cut(s) | 2131, 2911 |
| Bpu14I | TTCGAA | 1 cut(s) | 2819 |
| BpuEI | CTTGAG | 3 cut(s) | 1170, 1699, 2731 |
| Bsa29I | ATCGAT | 2 cut(s) | 949, 2572 |
| BsaAI | YACGTR | 1 cut(s) | 3345 |
| BsaBI | GATNNNNATC | 4 cut(s) | 174, 945, 1152, 3150 |
| BsaJI | CCNNGG | 2 cut(s) | 2199, 2768 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 795, 825, 2458, 2488, 2884, 2914 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 276, 1289, 2033, 2365, 2383 |
| Bse1I | ACTGG | 7 cut(s) | 605, 958, 1332, 2114, 2370, 3008, 3468 |
| Bse3DI | GCAATG | 4 cut(s) | 1359, 2228, 2577, 3329 |
| Bse8I | GATNNNNATC | 4 cut(s) | 174, 945, 1152, 3150 |
| BseBI | CCWGG | 2 cut(s) | 1560, 2740 |
| BseCI | ATCGAT | 2 cut(s) | 949, 2572 |
| BseDI | CCNNGG | 2 cut(s) | 2199, 2768 |
| BseGI | GGATG | 7 cut(s) | 266, 292, 2195, 2237, 2633, 2791, 2935 |
| BseJI | GATNNNNATC | 4 cut(s) | 174, 945, 1152, 3150 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 276, 1289, 2033, 2365, 2383 |
| BseMI | GCAATG | 4 cut(s) | 1359, 2228, 2577, 3329 |
| BseMII | CTCAG | 4 cut(s) | 71, 2343, 2993, 3159 |
| BseNI | ACTGG | 7 cut(s) | 605, 958, 1332, 2114, 2370, 3008, 3468 |
| BseRI | GAGGAG | 3 cut(s) | 201, 2479, 2882 |
| BseSI | GKGCMC | 1 cut(s) | 2360 |
| BseXI | GCAGC | 6 cut(s) | 491, 1581, 1875, 2322, 2720, 3264 |
| BsgI | GTGCAG | 5 cut(s) | 546, 1249, 2719, 3263, 3474 |
| Bsh1236I | CGCG | 2 cut(s) | 2618, 2730 |
| BshFI | GGCC | 5 cut(s) | 5, 340, 1191, 1466, 1792 |
| BshVI | ATCGAT | 2 cut(s) | 949, 2572 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2078 |
| BsiHKCI | CYCGRG | 1 cut(s) | 505 |
| BslFI | GGGAC | 2 cut(s) | 2351, 2605 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 276, 1289, 2033, 2365, 2383 |
| BsmAI | GTCTC | 3 cut(s) | 2452, 2494, 2887 |
| BsmBI | CGTCTC | 2 cut(s) | 2452, 2494 |
| BsmFI | GGGAC | 2 cut(s) | 2351, 2605 |
| BsmI | GAATGC | 1 cut(s) | 1293 |
| BsnI | GGCC | 5 cut(s) | 5, 340, 1191, 1466, 1792 |
| BsoBI | CYCGRG | 1 cut(s) | 505 |
| Bsp119I | TTCGAA | 1 cut(s) | 2819 |
| Bsp1286I | GDGCHC | 3 cut(s) | 2078, 2360, 3377 |
| Bsp1407I | TGTACA | 2 cut(s) | 625, 2003 |
| BspACI | CCGC | 6 cut(s) | 898, 996, 1777, 1802, 1867, 2730 |
| BspANI | GGCC | 5 cut(s) | 5, 340, 1191, 1466, 1792 |
| BspCNI | CTCAG | 4 cut(s) | 72, 2344, 2992, 3160 |
| BspDI | ATCGAT | 2 cut(s) | 949, 2572 |
| BspFNI | CGCG | 2 cut(s) | 2618, 2730 |
| BspHI | TCATGA | 2 cut(s) | 1087, 1537 |
| BspLI | GGNNCC | 4 cut(s) | 360, 2038, 2526, 3027 |
| BspT104I | TTCGAA | 1 cut(s) | 2819 |
| BsrDI | GCAATG | 4 cut(s) | 1359, 2228, 2577, 3329 |
| BsrGI | TGTACA | 2 cut(s) | 625, 2003 |
| BsrI | ACTGG | 7 cut(s) | 605, 958, 1332, 2114, 2370, 3008, 3468 |
| BssECI | CCNNGG | 2 cut(s) | 2199, 2768 |
| BssSI | CACGAG | 2 cut(s) | 621, 2084 |
| BssT1I | CCWWGG | 2 cut(s) | 2199, 2768 |
| Bst2BI | CACGAG | 2 cut(s) | 621, 2084 |
| Bst2UI | CCWGG | 2 cut(s) | 1560, 2740 |
| Bst4CI | ACNGT | 6 cut(s) | 1740, 1799, 2001, 2435, 3072, 3213 |
| Bst6I | CTCTTC | 3 cut(s) | 1536, 2150, 2963 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1507 |
| BstAUI | TGTACA | 2 cut(s) | 625, 2003 |
| BstBAI | YACGTR | 1 cut(s) | 3345 |
| BstBI | TTCGAA | 1 cut(s) | 2819 |
| BstC8I | GCNNGC | 3 cut(s) | 512, 1254, 1366 |
| BstDEI | CTNAG | 9 cut(s) | 80, 646, 1850, 1978, 1994, 2051, 2352, 2979, 3168 |
| BstF5I | GGATG | 7 cut(s) | 266, 292, 2195, 2237, 2633, 2791, 2935 |
| BstFNI | CGCG | 2 cut(s) | 2618, 2730 |
| BstH2I | RGCGCY | 2 cut(s) | 1205, 2558 |
| BstHHI | GCGC | 4 cut(s) | 1204, 1569, 2557, 2730 |
| BstMAI | GTCTC | 3 cut(s) | 2452, 2494, 2887 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1507, 1555, 1564, 2056, 2563, 3331 |
| BstNI | CCWGG | 2 cut(s) | 1560, 2740 |
| BstNSI | RCATGY | 2 cut(s) | 637, 1368 |
| BstSCI | CCNGG | 2 cut(s) | 1558, 2738 |
| BstSLI | GKGCMC | 1 cut(s) | 2360 |
| BstUI | CGCG | 2 cut(s) | 2618, 2730 |
| BstV1I | GCAGC | 6 cut(s) | 491, 1581, 1875, 2322, 2720, 3264 |
| BstV2I | GAAGAC | 2 cut(s) | 713, 3435 |
| BstX2I | RGATCY | 6 cut(s) | 358, 1666, 1990, 2036, 2114, 2299 |
| BstYI | RGATCY | 6 cut(s) | 358, 1666, 1990, 2036, 2114, 2299 |
| Bsu15I | ATCGAT | 2 cut(s) | 949, 2572 |
| BsuI | GTATCC | 1 cut(s) | 91 |
| BsuRI | GGCC | 5 cut(s) | 5, 340, 1191, 1466, 1792 |
| BsuTUI | ATCGAT | 2 cut(s) | 949, 2572 |
| BtsCI | GGATG | 7 cut(s) | 266, 292, 2195, 2237, 2633, 2791, 2935 |
| BtsIMutI | CAGTG | 4 cut(s) | 1325, 2538, 3218, 3475 |
| Cac8I | GCNNGC | 3 cut(s) | 512, 1254, 1366 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2540 |
| CciI | TCATGA | 2 cut(s) | 1087, 1537 |
| CfoI | GCGC | 4 cut(s) | 1204, 1569, 2557, 2730 |
| Cfr13I | GGNCC | 3 cut(s) | 955, 1465, 3511 |
| ClaI | ATCGAT | 2 cut(s) | 949, 2572 |
| CseI | GACGC | 4 cut(s) | 2098, 2607, 2957, 3314 |
| Csp6I | GTAC | 4 cut(s) | 626, 668, 2004, 2055 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2315, 2350, 2817, 2852 |
| CviQI | GTAC | 4 cut(s) | 626, 668, 2004, 2055 |
| DdeI | CTNAG | 9 cut(s) | 80, 646, 1850, 1978, 1994, 2051, 2352, 2979, 3168 |
| DraI | TTTAAA | 2 cut(s) | 1920, 2013 |
| DraIII | CACNNNGTG | 1 cut(s) | 73 |
| EaeI | YGGCCR | 2 cut(s) | 3, 338 |
| Eam1104I | CTCTTC | 3 cut(s) | 1536, 2150, 2963 |
| EarI | CTCTTC | 3 cut(s) | 1536, 2150, 2963 |
| Eco130I | CCWWGG | 2 cut(s) | 2199, 2768 |
| Eco147I | AGGCCT | 1 cut(s) | 1191 |
| Eco24I | GRGCYC | 1 cut(s) | 3377 |
| Eco32I | GATATC | 2 cut(s) | 1401, 2249 |
| Eco47I | GGWCC | 2 cut(s) | 955, 3511 |
| Eco47III | AGCGCT | 1 cut(s) | 1203 |
| Eco57I | CTGAAG | 2 cut(s) | 2174, 2415 |
| Eco88I | CYCGRG | 1 cut(s) | 505 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1465, 3511 |
| EcoRI | GAATTC | 4 cut(s) | 1889, 2477, 2543, 2687 |
| EcoRII | CCWGG | 2 cut(s) | 1558, 2738 |
| EcoRV | GATATC | 2 cut(s) | 1401, 2249 |
| EcoT14I | CCWWGG | 2 cut(s) | 2199, 2768 |
| EcoT22I | ATGCAT | 2 cut(s) | 268, 1503 |
| EcoT38I | GRGCYC | 1 cut(s) | 3377 |
| ErhI | CCWWGG | 2 cut(s) | 2199, 2768 |
| Esp3I | CGTCTC | 2 cut(s) | 2452, 2494 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 621, 653 |
| FaqI | GGGAC | 2 cut(s) | 2351, 2605 |
| FauI | CCCGC | 1 cut(s) | 891 |
| FbaI | TGATCA | 2 cut(s) | 3145, 3496 |
| Fnu4HI | GCNGC | 9 cut(s) | 480, 997, 1570, 1864, 1867, 2311, 2731, 2734, 3278 |
| FokI | GGATG | 7 cut(s) | 253, 299, 2182, 2224, 2620, 2798, 2942 |
| FriOI | GRGCYC | 1 cut(s) | 3377 |
| Fsp4HI | GCNGC | 9 cut(s) | 480, 997, 1570, 1864, 1867, 2311, 2731, 2734, 3278 |
| FspBI | CTAG | 9 cut(s) | 293, 845, 1079, 1440, 1511, 1659, 1943, 2567, 3517 |
| GlaI | GCGC | 4 cut(s) | 1203, 1568, 2556, 2729 |
| GluI | GCNGC | 9 cut(s) | 480, 997, 1570, 1864, 1867, 2311, 2731, 2734, 3278 |
| GsuI | CTGGAG | 2 cut(s) | 2131, 2911 |
| HaeII | RGCGCY | 2 cut(s) | 1205, 2558 |
| HaeIII | GGCC | 5 cut(s) | 5, 340, 1191, 1466, 1792 |
| HgaI | GACGC | 4 cut(s) | 2098, 2607, 2957, 3314 |
| HhaI | GCGC | 4 cut(s) | 1204, 1569, 2557, 2730 |
| Hin6I | GCGC | 4 cut(s) | 1202, 1567, 2555, 2728 |
| HinP1I | GCGC | 4 cut(s) | 1202, 1567, 2555, 2728 |
| HincII | GTYRAC | 5 cut(s) | 814, 1165, 1732, 2107, 2707 |
| HindII | GTYRAC | 5 cut(s) | 814, 1165, 1732, 2107, 2707 |
| HindIII | AAGCTT | 3 cut(s) | 1092, 1254, 2048 |
| HpaI | GTTAAC | 2 cut(s) | 1165, 2107 |
| HphI | GGTGA | 6 cut(s) | 407, 1490, 2015, 2486, 3380, 3457 |
| Hpy99I | CGWCG | 2 cut(s) | 3072, 3312 |
| HpyCH4III | ACNGT | 6 cut(s) | 1740, 1799, 2001, 2435, 3072, 3213 |
| HpyCH4IV | ACGT | 8 cut(s) | 369, 1243, 1728, 1876, 2267, 3246, 3344, 3432 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1507, 1555, 1564, 2056, 2563, 3331 |
| HpyF3I | CTNAG | 9 cut(s) | 80, 646, 1850, 1978, 1994, 2051, 2352, 2979, 3168 |
| HpySE526I | ACGT | 8 cut(s) | 369, 1243, 1728, 1876, 2267, 3246, 3344, 3432 |
| HspAI | GCGC | 4 cut(s) | 1202, 1567, 2555, 2728 |
| Ksp22I | TGATCA | 2 cut(s) | 3145, 3496 |
| KspAI | GTTAAC | 2 cut(s) | 1165, 2107 |
| LmnI | GCTCC | 2 cut(s) | 2524, 2839 |
| Lsp1109I | GCAGC | 6 cut(s) | 491, 1581, 1875, 2322, 2720, 3264 |
| LweI | GCATC | 8 cut(s) | 275, 1312, 1644, 1878, 2229, 2322, 2642, 3073 |
| MaeI | CTAG | 9 cut(s) | 293, 845, 1079, 1440, 1511, 1659, 1943, 2567, 3517 |
| MaeII | ACGT | 8 cut(s) | 369, 1243, 1728, 1876, 2267, 3246, 3344, 3432 |
| MaeIII | GTNAC | 5 cut(s) | 1316, 1421, 2086, 2368, 2435 |
| MfeI | CAATTG | 3 cut(s) | 11, 714, 738 |
| MflI | RGATCY | 6 cut(s) | 358, 1666, 1990, 2036, 2114, 2299 |
| MhlI | GDGCHC | 3 cut(s) | 2078, 2360, 3377 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 8 cut(s) | 1553, 1690, 2384, 2432, 2889, 2961, 3269, 3360 |
| MmeI | TCCRAC | 4 cut(s) | 2014, 2429, 2763, 3243 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| Mph1103I | ATGCAT | 2 cut(s) | 268, 1503 |
| MroXI | GAANNNNTTC | 3 cut(s) | 207, 294, 2400 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MslI | CAYNNNNRTG | 3 cut(s) | 519, 1225, 1590 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 3 cut(s) | 996, 1804, 3042 |
| MspR9I | CCNGG | 2 cut(s) | 1560, 2740 |
| MunI | CAATTG | 3 cut(s) | 11, 714, 738 |
| Mva1269I | GAATGC | 1 cut(s) | 1293 |
| MvaI | CCWGG | 2 cut(s) | 1560, 2740 |
| MvnI | CGCG | 2 cut(s) | 2618, 2730 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1507, 1555, 1564, 2056, 2563, 3331 |
| NlaIV | GGNNCC | 4 cut(s) | 360, 2038, 2526, 3027 |
| NmuCI | GTSAC | 2 cut(s) | 2086, 2435 |
| NsiI | ATGCAT | 2 cut(s) | 268, 1503 |
| NspI | RCATGY | 2 cut(s) | 637, 1368 |
| NspV | TTCGAA | 1 cut(s) | 2819 |
| OliI | CACNNNNGTG | 1 cut(s) | 1225 |
| PaeI | GCATGC | 1 cut(s) | 1368 |
| PagI | TCATGA | 2 cut(s) | 1087, 1537 |
| PceI | AGGCCT | 1 cut(s) | 1191 |
| PctI | GAATGC | 1 cut(s) | 1293 |
| PdmI | GAANNNNTTC | 3 cut(s) | 207, 294, 2400 |
| PflFI | GACNNNGTC | 1 cut(s) | 2898 |
| PkrI | GCNGC | 9 cut(s) | 481, 998, 1571, 1865, 1868, 2312, 2732, 2735, 3279 |
| PleI | GAGTC | 8 cut(s) | 1552, 1689, 2384, 2432, 2889, 2961, 3268, 3359 |
| PpsI | GAGTC | 8 cut(s) | 1552, 1689, 2384, 2432, 2889, 2961, 3268, 3359 |
| Ppu21I | YACGTR | 1 cut(s) | 3345 |
| PpuMI | RGGWCCY | 1 cut(s) | 3511 |
| PshBI | ATTAAT | 1 cut(s) | 2130 |
| PsiI | TTATAA | 1 cut(s) | 1724 |
| Psp1406I | AACGTT | 2 cut(s) | 2267, 3246 |
| Psp5II | RGGWCCY | 1 cut(s) | 3511 |
| Psp6I | CCWGG | 2 cut(s) | 1558, 2738 |
| PspGI | CCWGG | 2 cut(s) | 1558, 2738 |
| PspN4I | GGNNCC | 4 cut(s) | 360, 2038, 2526, 3027 |
| PspPI | GGNCC | 3 cut(s) | 955, 1465, 3511 |
| PspPPI | RGGWCCY | 1 cut(s) | 3511 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2540 |
| PsuI | RGATCY | 6 cut(s) | 358, 1666, 1990, 2036, 2114, 2299 |
| PsyI | GACNNNGTC | 1 cut(s) | 2898 |
| PvuII | CAGCTG | 1 cut(s) | 3042 |
| RsaI | GTAC | 4 cut(s) | 627, 669, 2005, 2056 |
| RsaNI | GTAC | 4 cut(s) | 626, 668, 2004, 2055 |
| RseI | CAYNNNNRTG | 3 cut(s) | 519, 1225, 1590 |
| SatI | GCNGC | 9 cut(s) | 480, 997, 1570, 1864, 1867, 2311, 2731, 2734, 3278 |
| Sau96I | GGNCC | 3 cut(s) | 955, 1465, 3511 |
| SchI | GAGTC | 8 cut(s) | 1553, 1690, 2384, 2432, 2889, 2961, 3269, 3360 |
| ScrFI | CCNGG | 2 cut(s) | 1560, 2740 |
| SduI | GDGCHC | 3 cut(s) | 2078, 2360, 3377 |
| SfaNI | GCATC | 8 cut(s) | 275, 1312, 1644, 1878, 2229, 2322, 2642, 3073 |
| SfuI | TTCGAA | 1 cut(s) | 2819 |
| SinI | GGWCC | 2 cut(s) | 955, 3511 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 519, 1225, 1590 |
| SmlI | CTYRAG | 3 cut(s) | 1185, 1678, 2710 |
| SmoI | CTYRAG | 3 cut(s) | 1185, 1678, 2710 |
| SpeI | ACTAGT | 1 cut(s) | 292 |
| SphI | GCATGC | 1 cut(s) | 1368 |
| SseBI | AGGCCT | 1 cut(s) | 1191 |
| SsiI | CCGC | 6 cut(s) | 898, 996, 1777, 1802, 1867, 2730 |
| SspI | AATATT | 2 cut(s) | 1407, 2605 |
| SspMI | CTAG | 9 cut(s) | 293, 845, 1079, 1440, 1511, 1659, 1943, 2567, 3517 |
| StuI | AGGCCT | 1 cut(s) | 1191 |
| StyD4I | CCNGG | 2 cut(s) | 1558, 2738 |
| StyI | CCWWGG | 2 cut(s) | 2199, 2768 |
| TaaI | ACNGT | 6 cut(s) | 1740, 1799, 2001, 2435, 3072, 3213 |
| TaiI | ACGT | 8 cut(s) | 372, 1246, 1731, 1879, 2270, 3249, 3347, 3435 |
| TaqI | TCGA | 8 cut(s) | 949, 2447, 2489, 2572, 2819, 2965, 3067, 3349 |
| TatI | WGTACW | 2 cut(s) | 625, 2003 |
| TauI | GCSGC | 3 cut(s) | 999, 1869, 2733 |
| TscAI | CASTG | 4 cut(s) | 1332, 2545, 3218, 3475 |
| TseFI | GTSAC | 2 cut(s) | 2086, 2435 |
| TseI | GCWGC | 6 cut(s) | 479, 1569, 1863, 2310, 2733, 3277 |
| Tsp45I | GTSAC | 2 cut(s) | 2086, 2435 |
| TspGWI | ACGGA | 5 cut(s) | 1749, 2111, 2476, 2518, 3440 |
| TspRI | CASTG | 4 cut(s) | 1332, 2545, 3218, 3475 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2898 |
| VpaK11BI | GGWCC | 2 cut(s) | 955, 3511 |
| VspI | ATTAAT | 1 cut(s) | 2130 |
| XceI | RCATGY | 2 cut(s) | 637, 1368 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2775 |
| XmnI | GAANNNNTTC | 3 cut(s) | 207, 294, 2400 |
| XspI | CTAG | 9 cut(s) | 293, 845, 1079, 1440, 1511, 1659, 1943, 2567, 3517 |
| Zsp2I | ATGCAT | 2 cut(s) | 268, 1503 |