TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 19 - 184 | 1.7e-56 | TIR domain |
| TIR_2 | PF13676 | 22 - 117 | 6.9e-17 | TIR domain |
| NB-ARC | PF00931 | 202 - 371 | 2.7e-16 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 438 - 507 | 8.8e-20 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 701 - 798 | 1.7e-11 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 748 - 944 | 1.4e-08 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 554, 1572, 2063 |
| AccB1I | GGYRCC | 1 cut(s) | 2400 |
| AccI | GTMKAC | 1 cut(s) | 3216 |
| AccII | CGCG | 1 cut(s) | 125 |
| AciI | CCGC | 4 cut(s) | 449, 960, 2351, 2766 |
| AclI | AACGTT | 1 cut(s) | 1575 |
| AclWI | GGATC | 4 cut(s) | 283, 341, 354, 1523 |
| AcuI | CTGAAG | 2 cut(s) | 1075, 1090 |
| AfaI | GTAC | 4 cut(s) | 1049, 1824, 1998, 2961 |
| AfeI | AGCGCT | 1 cut(s) | 195 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 264, 1409, 2009, 2555 |
| AflII | CTTAAG | 1 cut(s) | 1654 |
| AflIII | ACRYGT | 2 cut(s) | 2250, 2327 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2896 |
| AjnI | CCWGG | 7 cut(s) | 750, 1402, 1512, 1531, 2586, 2801, 3004 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3000, 3032 |
| Alw21I | GWGCWC | 4 cut(s) | 168, 1089, 1425, 2106 |
| Alw26I | GTCTC | 5 cut(s) | 593, 800, 1933, 2614, 3197 |
| AlwI | GGATC | 4 cut(s) | 283, 341, 354, 1523 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 319 |
| Ama87I | CYCGRG | 1 cut(s) | 293 |
| Aor51HI | AGCGCT | 1 cut(s) | 195 |
| AoxI | GGCC | 6 cut(s) | 109, 482, 1171, 1393, 1434, 1766 |
| ApeKI | GCWGC | 5 cut(s) | 17, 120, 464, 857, 1627 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 485, 517, 3170, 3202 |
| AseI | ATTAAT | 1 cut(s) | 1416 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 432, 1103, 2463, 2787 |
| AspA2I | CCTAGG | 2 cut(s) | 1835, 3104 |
| AspLEI | GCGC | 3 cut(s) | 125, 196, 894 |
| AspS9I | GGNCC | 2 cut(s) | 1118, 1435 |
| AsuHPI | GGTGA | 5 cut(s) | 395, 859, 1502, 2602, 3188 |
| AvaI | CYCGRG | 1 cut(s) | 293 |
| AvaII | GGWCC | 1 cut(s) | 1118 |
| AvrII | CCTAGG | 2 cut(s) | 1835, 3104 |
| BaeGI | GKGCMC | 1 cut(s) | 2405 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1447, 1480 |
| BamHI | GGATCC | 1 cut(s) | 346 |
| BanI | GGYRCC | 1 cut(s) | 2400 |
| BanII | GRGCYC | 3 cut(s) | 168, 1089, 2106 |
| BauI | CACGAG | 1 cut(s) | 603 |
| BbsI | GAAGAC | 1 cut(s) | 2708 |
| Bbv12I | GWGCWC | 4 cut(s) | 168, 1089, 1425, 2106 |
| BbvI | GCAGC | 5 cut(s) | 29, 132, 476, 844, 1614 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 305, 339, 1695, 1729 |
| BciT130I | CCWGG | 7 cut(s) | 752, 1404, 1514, 1533, 2588, 2803, 3006 |
| BciVI | GTATCC | 5 cut(s) | 82, 594, 1475, 2216, 2799 |
| BcoDI | GTCTC | 5 cut(s) | 593, 800, 1933, 2614, 3197 |
| BfmI | CTRYAG | 4 cut(s) | 861, 1155, 2119, 3181 |
| BfoI | RGCGCY | 1 cut(s) | 197 |
| BfrI | CTTAAG | 1 cut(s) | 1654 |
| BfuI | GTATCC | 5 cut(s) | 82, 594, 1475, 2216, 2799 |
| BglII | AGATCT | 1 cut(s) | 537 |
| BisI | GCNGC | 7 cut(s) | 18, 121, 450, 465, 858, 1628, 2351 |
| BlnI | CCTAGG | 2 cut(s) | 1835, 3104 |
| BlsI | GCNGC | 7 cut(s) | 19, 122, 451, 466, 859, 1629, 2352 |
| BmcAI | AGTACT | 1 cut(s) | 2961 |
| Bme1390I | CCNGG | 7 cut(s) | 752, 1404, 1514, 1533, 2588, 2803, 3006 |
| Bme18I | GGWCC | 1 cut(s) | 1118 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2896 |
| BmeT110I | CYCGRG | 1 cut(s) | 293 |
| BmgT120I | GGNCC | 2 cut(s) | 1118, 1435 |
| BmiI | GGNNCC | 2 cut(s) | 348, 2402 |
| BmrFI | CCNGG | 7 cut(s) | 752, 1404, 1514, 1533, 2588, 2803, 3006 |
| BpiI | GAAGAC | 1 cut(s) | 2708 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2164, 2196 |
| BpmI | CTGGAG | 1 cut(s) | 1743 |
| BpuEI | CTTGAG | 5 cut(s) | 1152, 1771, 1811, 2150, 2257 |
| BsaAI | YACGTR | 2 cut(s) | 564, 1369 |
| BsaBI | GATNNNNATC | 3 cut(s) | 227, 2089, 3098 |
| BsaI | GGTCTC | 2 cut(s) | 800, 3197 |
| BsaJI | CCNNGG | 5 cut(s) | 50, 1402, 1808, 1835, 3104 |
| BsaWI | WCCGGW | 1 cut(s) | 586 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 777, 807 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 264, 1409, 2009, 2555 |
| Bse1I | ACTGG | 9 cut(s) | 324, 329, 446, 679, 1860, 2197, 2784, 2814, 2874 |
| Bse3DI | GCAATG | 1 cut(s) | 1414 |
| Bse8I | GATNNNNATC | 3 cut(s) | 227, 2089, 3098 |
| BseBI | CCWGG | 7 cut(s) | 752, 1404, 1514, 1533, 2588, 2803, 3006 |
| BseDI | CCNNGG | 5 cut(s) | 50, 1402, 1808, 1835, 3104 |
| BseJI | GATNNNNATC | 3 cut(s) | 227, 2089, 3098 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 264, 1409, 2009, 2555 |
| BseMI | GCAATG | 1 cut(s) | 1414 |
| BseMII | CTCAG | 3 cut(s) | 62, 555, 2976 |
| BseNI | ACTGG | 9 cut(s) | 324, 329, 446, 679, 1860, 2197, 2784, 2814, 2874 |
| BseRI | GAGGAG | 3 cut(s) | 19, 96, 189 |
| BseSI | GKGCMC | 1 cut(s) | 2405 |
| BseXI | GCAGC | 5 cut(s) | 29, 132, 476, 844, 1614 |
| BseYI | CCCAGC | 1 cut(s) | 2532 |
| BsgI | GTGCAG | 2 cut(s) | 139, 3214 |
| Bsh1236I | CGCG | 1 cut(s) | 125 |
| BshFI | GGCC | 6 cut(s) | 111, 484, 1173, 1395, 1436, 1768 |
| BshNI | GGYRCC | 1 cut(s) | 2400 |
| BsiHKAI | GWGCWC | 4 cut(s) | 168, 1089, 1425, 2106 |
| BsiHKCI | CYCGRG | 1 cut(s) | 293 |
| BsiSI | CCGG | 2 cut(s) | 587, 2107 |
| BslFI | GGGAC | 3 cut(s) | 685, 1761, 2203 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 264, 1409, 2009, 2555 |
| BsmAI | GTCTC | 5 cut(s) | 593, 800, 1933, 2614, 3197 |
| BsmFI | GGGAC | 3 cut(s) | 685, 1761, 2203 |
| BsmI | GAATGC | 1 cut(s) | 1105 |
| BsnI | GGCC | 6 cut(s) | 111, 484, 1173, 1395, 1436, 1768 |
| Bso31I | GGTCTC | 2 cut(s) | 800, 3197 |
| BsoBI | CYCGRG | 1 cut(s) | 293 |
| Bsp1286I | GDGCHC | 5 cut(s) | 168, 1089, 1425, 2106, 2405 |
| Bsp1407I | TGTACA | 1 cut(s) | 1047 |
| Bsp143I | GATC | 4 cut(s) | 288, 346, 537, 1528 |
| BspACI | CCGC | 4 cut(s) | 449, 960, 2351, 2766 |
| BspANI | GGCC | 6 cut(s) | 111, 484, 1173, 1395, 1436, 1768 |
| BspCNI | CTCAG | 3 cut(s) | 63, 554, 2977 |
| BspFNI | CGCG | 1 cut(s) | 125 |
| BspHI | TCATGA | 3 cut(s) | 520, 1072, 1558 |
| BspLI | GGNNCC | 2 cut(s) | 348, 2402 |
| BspMAI | CTGCAG | 2 cut(s) | 2123, 3185 |
| BspPI | GGATC | 4 cut(s) | 283, 341, 354, 1523 |
| BspQI | GCTCTTC | 1 cut(s) | 1094 |
| BspT107I | GGYRCC | 1 cut(s) | 2400 |
| BspTI | CTTAAG | 1 cut(s) | 1654 |
| BspTNI | GGTCTC | 2 cut(s) | 800, 3197 |
| BsrDI | GCAATG | 1 cut(s) | 1414 |
| BsrGI | TGTACA | 1 cut(s) | 1047 |
| BsrI | ACTGG | 9 cut(s) | 324, 329, 446, 679, 1860, 2197, 2784, 2814, 2874 |
| BssECI | CCNNGG | 5 cut(s) | 50, 1402, 1808, 1835, 3104 |
| BssMI | GATC | 4 cut(s) | 288, 346, 537, 1528 |
| BssSI | CACGAG | 1 cut(s) | 603 |
| BssT1I | CCWWGG | 3 cut(s) | 1808, 1835, 3104 |
| Bst2BI | CACGAG | 1 cut(s) | 603 |
| Bst2UI | CCWGG | 7 cut(s) | 752, 1404, 1514, 1533, 2588, 2803, 3006 |
| Bst4CI | ACNGT | 6 cut(s) | 216, 1463, 1695, 1775, 2526, 2571 |
| Bst6I | CTCTTC | 3 cut(s) | 37, 528, 1094 |
| BstAFI | CTTAAG | 1 cut(s) | 1654 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1480 |
| BstAUI | TGTACA | 1 cut(s) | 1047 |
| BstBAI | YACGTR | 2 cut(s) | 564, 1369 |
| BstC8I | GCNNGC | 3 cut(s) | 958, 1547, 2434 |
| BstDSI | CCRYGG | 1 cut(s) | 50 |
| BstEII | GGTNACC | 1 cut(s) | 847 |
| BstFNI | CGCG | 1 cut(s) | 125 |
| BstH2I | RGCGCY | 1 cut(s) | 197 |
| BstHHI | GCGC | 3 cut(s) | 125, 196, 894 |
| BstKTI | GATC | 4 cut(s) | 291, 349, 540, 1531 |
| BstMAI | GTCTC | 5 cut(s) | 593, 800, 1933, 2614, 3197 |
| BstMBI | GATC | 4 cut(s) | 288, 346, 537, 1528 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 117, 401, 786, 1480 |
| BstNI | CCWGG | 7 cut(s) | 752, 1404, 1514, 1533, 2588, 2803, 3006 |
| BstNSI | RCATGY | 3 cut(s) | 1341, 2254, 2331 |
| BstPI | GGTNACC | 1 cut(s) | 847 |
| BstSCI | CCNGG | 7 cut(s) | 750, 1402, 1512, 1531, 2586, 2801, 3004 |
| BstSFI | CTRYAG | 4 cut(s) | 861, 1155, 2119, 3181 |
| BstSLI | GKGCMC | 1 cut(s) | 2405 |
| BstSNI | TACGTA | 1 cut(s) | 564 |
| BstUI | CGCG | 1 cut(s) | 125 |
| BstV1I | GCAGC | 5 cut(s) | 29, 132, 476, 844, 1614 |
| BstV2I | GAAGAC | 1 cut(s) | 2708 |
| BstX2I | RGATCY | 3 cut(s) | 288, 346, 537 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2809 |
| BstYI | RGATCY | 3 cut(s) | 288, 346, 537 |
| BsuI | GTATCC | 5 cut(s) | 82, 594, 1475, 2216, 2799 |
| BsuRI | GGCC | 6 cut(s) | 111, 484, 1173, 1395, 1436, 1768 |
| BtgI | CCRYGG | 1 cut(s) | 50 |
| BtsIMutI | CAGTG | 4 cut(s) | 1425, 2777, 2922, 3302 |
| Cac8I | GCNNGC | 3 cut(s) | 958, 1547, 2434 |
| CaiI | CAGNNNCTG | 1 cut(s) | 319 |
| CciI | TCATGA | 3 cut(s) | 520, 1072, 1558 |
| CfoI | GCGC | 3 cut(s) | 125, 196, 894 |
| Cfr13I | GGNCC | 2 cut(s) | 1118, 1435 |
| CseI | GACGC | 1 cut(s) | 119 |
| Csp6I | GTAC | 4 cut(s) | 1048, 1823, 1997, 2960 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1167, 1202 |
| CviQI | GTAC | 4 cut(s) | 1048, 1823, 1997, 2960 |
| DpnI | GATC | 4 cut(s) | 290, 348, 539, 1530 |
| DpnII | GATC | 4 cut(s) | 288, 346, 537, 1528 |
| DraI | TTTAAA | 1 cut(s) | 1348 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2896 |
| Eam1104I | CTCTTC | 3 cut(s) | 37, 528, 1094 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2896 |
| EarI | CTCTTC | 3 cut(s) | 37, 528, 1094 |
| EciI | GGCGGA | 1 cut(s) | 975 |
| Ecl136II | GAGCTC | 3 cut(s) | 166, 1087, 2104 |
| Eco105I | TACGTA | 1 cut(s) | 564 |
| Eco130I | CCWWGG | 3 cut(s) | 1808, 1835, 3104 |
| Eco147I | AGGCCT | 1 cut(s) | 1173 |
| Eco24I | GRGCYC | 3 cut(s) | 168, 1089, 2106 |
| Eco31I | GGTCTC | 2 cut(s) | 800, 3197 |
| Eco32I | GATATC | 1 cut(s) | 3100 |
| Eco47I | GGWCC | 1 cut(s) | 1118 |
| Eco47III | AGCGCT | 1 cut(s) | 195 |
| Eco53kI | GAGCTC | 3 cut(s) | 166, 1087, 2104 |
| Eco57I | CTGAAG | 2 cut(s) | 1075, 1090 |
| Eco88I | CYCGRG | 1 cut(s) | 293 |
| Eco91I | GGTNACC | 1 cut(s) | 847 |
| EcoICRI | GAGCTC | 3 cut(s) | 166, 1087, 2104 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1118 |
| EcoO65I | GGTNACC | 1 cut(s) | 847 |
| EcoRI | GAATTC | 1 cut(s) | 2813 |
| EcoRII | CCWGG | 7 cut(s) | 750, 1402, 1512, 1531, 2586, 2801, 3004 |
| EcoRV | GATATC | 1 cut(s) | 3100 |
| EcoT14I | CCWWGG | 3 cut(s) | 1808, 1835, 3104 |
| EcoT22I | ATGCAT | 3 cut(s) | 256, 1300, 1476 |
| EcoT38I | GRGCYC | 3 cut(s) | 168, 1089, 2106 |
| ErhI | CCWWGG | 3 cut(s) | 1808, 1835, 3104 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 254, 286, 795, 827, 2420, 2452 |
| FaqI | GGGAC | 3 cut(s) | 685, 1761, 2203 |
| FblI | GTMKAC | 1 cut(s) | 3216 |
| Fnu4HI | GCNGC | 7 cut(s) | 18, 121, 450, 465, 858, 1628, 2351 |
| FriOI | GRGCYC | 3 cut(s) | 168, 1089, 2106 |
| Fsp4HI | GCNGC | 7 cut(s) | 18, 121, 450, 465, 858, 1628, 2351 |
| GlaI | GCGC | 3 cut(s) | 124, 195, 893 |
| GluI | GCNGC | 7 cut(s) | 18, 121, 450, 465, 858, 1628, 2351 |
| GsaI | CCCAGC | 1 cut(s) | 2536 |
| GsuI | CTGGAG | 1 cut(s) | 1743 |
| HaeII | RGCGCY | 1 cut(s) | 197 |
| HaeIII | GGCC | 6 cut(s) | 111, 484, 1173, 1395, 1436, 1768 |
| HapII | CCGG | 2 cut(s) | 587, 2107 |
| HgaI | GACGC | 1 cut(s) | 119 |
| HhaI | GCGC | 3 cut(s) | 125, 196, 894 |
| Hin6I | GCGC | 3 cut(s) | 123, 194, 892 |
| HinP1I | GCGC | 3 cut(s) | 123, 194, 892 |
| HindIII | AAGCTT | 1 cut(s) | 1984 |
| HpaII | CCGG | 2 cut(s) | 587, 2107 |
| HphI | GGTGA | 5 cut(s) | 395, 859, 1502, 2602, 3188 |
| Hpy166II | GTNNAC | 4 cut(s) | 1510, 1913, 2610, 3217 |
| Hpy8I | GTNNAC | 4 cut(s) | 1510, 1913, 2610, 3217 |
| Hpy99I | CGWCG | 2 cut(s) | 355, 2894 |
| HpyCH4III | ACNGT | 6 cut(s) | 216, 1463, 1695, 1775, 2526, 2571 |
| HpyCH4IV | ACGT | 7 cut(s) | 423, 563, 1150, 1368, 1540, 1575, 2892 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 117, 401, 786, 1480 |
| HpySE526I | ACGT | 7 cut(s) | 423, 563, 1150, 1368, 1540, 1575, 2892 |
| HspAI | GCGC | 3 cut(s) | 123, 194, 892 |
| Kzo9I | GATC | 4 cut(s) | 288, 346, 537, 1528 |
| LguI | GCTCTTC | 1 cut(s) | 1094 |
| LmnI | GCTCC | 2 cut(s) | 1624, 2109 |
| Lsp1109I | GCAGC | 5 cut(s) | 29, 132, 476, 844, 1614 |
| MaeII | ACGT | 7 cut(s) | 423, 563, 1150, 1368, 1540, 1575, 2892 |
| MaeIII | GTNAC | 5 cut(s) | 847, 2775, 2865, 3176, 3245 |
| MalI | GATC | 4 cut(s) | 290, 348, 539, 1530 |
| MboI | GATC | 4 cut(s) | 288, 346, 537, 1528 |
| MfeI | CAATTG | 2 cut(s) | 207, 696 |
| MflI | RGATCY | 3 cut(s) | 288, 346, 537 |
| MhlI | GDGCHC | 5 cut(s) | 168, 1089, 1425, 2106, 2405 |
| MlyI | GAGTC | 7 cut(s) | 595, 1526, 1849, 2173, 2616, 2722, 2906 |
| MmeI | TCCRAC | 7 cut(s) | 333, 439, 1076, 1956, 2096, 2447, 2816 |
| Mph1103I | ATGCAT | 3 cut(s) | 256, 1300, 1476 |
| MroXI | GAANNNNTTC | 4 cut(s) | 432, 1103, 2463, 2787 |
| MslI | CAYNNNNRTG | 5 cut(s) | 152, 1430, 1563, 1619, 3241 |
| MspCI | CTTAAG | 1 cut(s) | 1654 |
| MspI | CCGG | 2 cut(s) | 587, 2107 |
| MspR9I | CCNGG | 7 cut(s) | 752, 1404, 1514, 1533, 2588, 2803, 3006 |
| MunI | CAATTG | 2 cut(s) | 207, 696 |
| Mva1269I | GAATGC | 1 cut(s) | 1105 |
| MvaI | CCWGG | 7 cut(s) | 752, 1404, 1514, 1533, 2588, 2803, 3006 |
| MvnI | CGCG | 1 cut(s) | 125 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 117, 401, 786, 1480 |
| NdeII | GATC | 4 cut(s) | 288, 346, 537, 1528 |
| NlaIV | GGNNCC | 2 cut(s) | 348, 2402 |
| NmuCI | GTSAC | 3 cut(s) | 847, 2775, 3176 |
| NsiI | ATGCAT | 3 cut(s) | 256, 1300, 1476 |
| NspI | RCATGY | 3 cut(s) | 1341, 2254, 2331 |
| PaeR7I | CTCGAG | 1 cut(s) | 293 |
| PagI | TCATGA | 3 cut(s) | 520, 1072, 1558 |
| PceI | AGGCCT | 1 cut(s) | 1173 |
| PciI | ACATGT | 2 cut(s) | 2250, 2327 |
| PciSI | GCTCTTC | 1 cut(s) | 1094 |
| PctI | GAATGC | 1 cut(s) | 1105 |
| PdmI | GAANNNNTTC | 4 cut(s) | 432, 1103, 2463, 2787 |
| PfoI | TCCNGGA | 4 cut(s) | 750, 1531, 2801, 3004 |
| PkrI | GCNGC | 7 cut(s) | 19, 122, 451, 466, 859, 1629, 2352 |
| PleI | GAGTC | 7 cut(s) | 595, 1525, 1848, 2173, 2616, 2721, 2905 |
| PpsI | GAGTC | 7 cut(s) | 595, 1525, 1848, 2173, 2616, 2721, 2905 |
| Ppu21I | YACGTR | 2 cut(s) | 564, 1369 |
| PpuMI | RGGWCCY | 1 cut(s) | 1118 |
| PscI | ACATGT | 2 cut(s) | 2250, 2327 |
| PshBI | ATTAAT | 1 cut(s) | 1416 |
| PsiI | TTATAA | 3 cut(s) | 554, 1572, 2063 |
| Psp124BI | GAGCTC | 3 cut(s) | 168, 1089, 2106 |
| Psp1406I | AACGTT | 1 cut(s) | 1575 |
| Psp5II | RGGWCCY | 1 cut(s) | 1118 |
| Psp6I | CCWGG | 7 cut(s) | 750, 1402, 1512, 1531, 2586, 2801, 3004 |
| PspEI | GGTNACC | 1 cut(s) | 847 |
| PspFI | CCCAGC | 1 cut(s) | 2532 |
| PspGI | CCWGG | 7 cut(s) | 750, 1402, 1512, 1531, 2586, 2801, 3004 |
| PspN4I | GGNNCC | 2 cut(s) | 348, 2402 |
| PspPI | GGNCC | 2 cut(s) | 1118, 1435 |
| PspPPI | RGGWCCY | 1 cut(s) | 1118 |
| PspXI | VCTCGAGB | 1 cut(s) | 293 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 417, 449 |
| PstI | CTGCAG | 2 cut(s) | 2123, 3185 |
| PstNI | CAGNNNCTG | 1 cut(s) | 319 |
| PsuI | RGATCY | 3 cut(s) | 288, 346, 537 |
| RsaI | GTAC | 4 cut(s) | 1049, 1824, 1998, 2961 |
| RsaNI | GTAC | 4 cut(s) | 1048, 1823, 1997, 2960 |
| RseI | CAYNNNNRTG | 5 cut(s) | 152, 1430, 1563, 1619, 3241 |
| SacI | GAGCTC | 3 cut(s) | 168, 1089, 2106 |
| SapI | GCTCTTC | 1 cut(s) | 1094 |
| SatI | GCNGC | 7 cut(s) | 18, 121, 450, 465, 858, 1628, 2351 |
| Sau3AI | GATC | 4 cut(s) | 288, 346, 537, 1528 |
| Sau96I | GGNCC | 2 cut(s) | 1118, 1435 |
| ScaI | AGTACT | 1 cut(s) | 2961 |
| SchI | GAGTC | 7 cut(s) | 595, 1526, 1849, 2173, 2616, 2722, 2906 |
| ScrFI | CCNGG | 7 cut(s) | 752, 1404, 1514, 1533, 2588, 2803, 3006 |
| SduI | GDGCHC | 5 cut(s) | 168, 1089, 1425, 2106, 2405 |
| SfcI | CTRYAG | 4 cut(s) | 861, 1155, 2119, 3181 |
| Sfr274I | CTCGAG | 1 cut(s) | 293 |
| SinI | GGWCC | 1 cut(s) | 1118 |
| SlaI | CTCGAG | 1 cut(s) | 293 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 152, 1430, 1563, 1619, 3241 |
| SmlI | CTYRAG | 7 cut(s) | 293, 1167, 1654, 1750, 1826, 2129, 2236 |
| SmoI | CTYRAG | 7 cut(s) | 293, 1167, 1654, 1750, 1826, 2129, 2236 |
| SnaBI | TACGTA | 1 cut(s) | 564 |
| SseBI | AGGCCT | 1 cut(s) | 1173 |
| SsiI | CCGC | 4 cut(s) | 449, 960, 2351, 2766 |
| SspI | AATATT | 2 cut(s) | 1447, 2881 |
| SstI | GAGCTC | 3 cut(s) | 168, 1089, 2106 |
| StuI | AGGCCT | 1 cut(s) | 1173 |
| StyD4I | CCNGG | 7 cut(s) | 750, 1402, 1512, 1531, 2586, 2801, 3004 |
| StyI | CCWWGG | 3 cut(s) | 1808, 1835, 3104 |
| TaaI | ACNGT | 6 cut(s) | 216, 1463, 1695, 1775, 2526, 2571 |
| TaiI | ACGT | 7 cut(s) | 426, 566, 1153, 1371, 1543, 1578, 2895 |
| TatI | WGTACW | 4 cut(s) | 1047, 1822, 1996, 2959 |
| TauI | GCSGC | 2 cut(s) | 452, 2353 |
| TscAI | CASTG | 4 cut(s) | 1432, 2784, 2922, 3309 |
| TseFI | GTSAC | 3 cut(s) | 847, 2775, 3176 |
| TseI | GCWGC | 5 cut(s) | 17, 120, 464, 857, 1627 |
| Tsp45I | GTSAC | 3 cut(s) | 847, 2775, 3176 |
| TspGWI | ACGGA | 3 cut(s) | 67, 339, 1457 |
| TspRI | CASTG | 4 cut(s) | 1432, 2784, 2922, 3309 |
| Vha464I | CTTAAG | 1 cut(s) | 1654 |
| VpaK11BI | GGWCC | 1 cut(s) | 1118 |
| VspI | ATTAAT | 1 cut(s) | 1416 |
| XbaI | TCTAGA | 1 cut(s) | 1222 |
| XceI | RCATGY | 3 cut(s) | 1341, 2254, 2331 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 268 |
| XhoI | CTCGAG | 1 cut(s) | 293 |
| XmaJI | CCTAGG | 2 cut(s) | 1835, 3104 |
| XmiI | GTMKAC | 1 cut(s) | 3216 |
| XmnI | GAANNNNTTC | 4 cut(s) | 432, 1103, 2463, 2787 |
| ZrmI | AGTACT | 1 cut(s) | 2961 |
| Zsp2I | ATGCAT | 3 cut(s) | 256, 1300, 1476 |