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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 306 |
| AccI | GTMKAC | 1 cut(s) | 8 |
| AccII | CGCG | 1 cut(s) | 134 |
| AciI | CCGC | 3 cut(s) | 41, 134, 225 |
| AcuI | CTGAAG | 2 cut(s) | 372, 459 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 231, 349, 419 |
| AgsI | TTSAA | 2 cut(s) | 59, 338 |
| AluBI | AGCT | 2 cut(s) | 29, 334 |
| AluI | AGCT | 2 cut(s) | 29, 334 |
| Alw26I | GTCTC | 2 cut(s) | 447, 453 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 439 |
| AoxI | GGCC | 1 cut(s) | 409 |
| ApeKI | GCWGC | 2 cut(s) | 129, 454 |
| AspLEI | GCGC | 2 cut(s) | 134, 308 |
| AspS9I | GGNCC | 2 cut(s) | 247, 410 |
| AsuC2I | CCSGG | 1 cut(s) | 229 |
| AsuHPI | GGTGA | 1 cut(s) | 434 |
| AvaII | GGWCC | 1 cut(s) | 247 |
| BauI | CACGAG | 1 cut(s) | 405 |
| BbvI | GCAGC | 2 cut(s) | 141, 441 |
| BccI | CCATC | 3 cut(s) | 151, 318, 475 |
| BceAI | ACGGC | 1 cut(s) | 34 |
| BclI | TGATCA | 1 cut(s) | 424 |
| BcnI | CCSGG | 1 cut(s) | 229 |
| BcoDI | GTCTC | 2 cut(s) | 447, 453 |
| BfoI | RGCGCY | 1 cut(s) | 309 |
| BfuAI | ACCTGC | 1 cut(s) | 306 |
| BisI | GCNGC | 4 cut(s) | 42, 130, 225, 455 |
| BlsI | GCNGC | 4 cut(s) | 43, 131, 226, 456 |
| Bme1390I | CCNGG | 1 cut(s) | 229 |
| Bme18I | GGWCC | 1 cut(s) | 247 |
| BmgT120I | GGNCC | 2 cut(s) | 247, 410 |
| BmiI | GGNNCC | 2 cut(s) | 186, 354 |
| BmrFI | CCNGG | 1 cut(s) | 229 |
| BmrI | ACTGGG | 1 cut(s) | 407 |
| BmsI | GCATC | 3 cut(s) | 53, 161, 248 |
| BmuI | ACTGGG | 1 cut(s) | 407 |
| BpuMI | CCSGG | 1 cut(s) | 229 |
| BsaJI | CCNNGG | 1 cut(s) | 228 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 310, 340 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 231, 349, 419 |
| Bse1I | ACTGG | 5 cut(s) | 153, 162, 194, 413, 433 |
| BseDI | CCNNGG | 1 cut(s) | 228 |
| BseGI | GGATG | 2 cut(s) | 112, 467 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 231, 349, 419 |
| BseMII | CTCAG | 2 cut(s) | 153, 351 |
| BseNI | ACTGG | 5 cut(s) | 153, 162, 194, 413, 433 |
| BseXI | GCAGC | 2 cut(s) | 141, 441 |
| BsgI | GTGCAG | 1 cut(s) | 284 |
| Bsh1236I | CGCG | 1 cut(s) | 134 |
| BshFI | GGCC | 1 cut(s) | 411 |
| BsiSI | CCGG | 1 cut(s) | 228 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 231, 349, 419 |
| BsmAI | GTCTC | 2 cut(s) | 447, 453 |
| BsnI | GGCC | 1 cut(s) | 411 |
| Bsp143I | GATC | 1 cut(s) | 424 |
| BspACI | CCGC | 3 cut(s) | 41, 134, 225 |
| BspANI | GGCC | 1 cut(s) | 411 |
| BspCNI | CTCAG | 2 cut(s) | 154, 352 |
| BspFNI | CGCG | 1 cut(s) | 134 |
| BspLI | GGNNCC | 2 cut(s) | 186, 354 |
| BspMI | ACCTGC | 1 cut(s) | 306 |
| BspQI | GCTCTTC | 1 cut(s) | 54 |
| BsrI | ACTGG | 5 cut(s) | 153, 162, 194, 413, 433 |
| BssECI | CCNNGG | 1 cut(s) | 228 |
| BssMI | GATC | 1 cut(s) | 424 |
| BssSI | CACGAG | 1 cut(s) | 405 |
| Bst2BI | CACGAG | 1 cut(s) | 405 |
| Bst4CI | ACNGT | 1 cut(s) | 247 |
| Bst6I | CTCTTC | 2 cut(s) | 54, 391 |
| BstC8I | GCNNGC | 1 cut(s) | 237 |
| BstDEI | CTNAG | 2 cut(s) | 162, 360 |
| BstF5I | GGATG | 2 cut(s) | 112, 467 |
| BstFNI | CGCG | 1 cut(s) | 134 |
| BstH2I | RGCGCY | 1 cut(s) | 309 |
| BstHHI | GCGC | 2 cut(s) | 134, 308 |
| BstKTI | GATC | 1 cut(s) | 427 |
| BstMAI | GTCTC | 2 cut(s) | 447, 453 |
| BstMBI | GATC | 1 cut(s) | 424 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 158, 463 |
| BstSCI | CCNGG | 1 cut(s) | 227 |
| BstUI | CGCG | 1 cut(s) | 134 |
| BstV1I | GCAGC | 2 cut(s) | 141, 441 |
| BsuRI | GGCC | 1 cut(s) | 411 |
| BtgZI | GCGATG | 2 cut(s) | 30, 110 |
| BtsCI | GGATG | 2 cut(s) | 112, 467 |
| BtsI | GCAGTG | 2 cut(s) | 219, 461 |
| BtsIMutI | CAGTG | 6 cut(s) | 146, 155, 201, 219, 440, 461 |
| BveI | ACCTGC | 1 cut(s) | 306 |
| Cac8I | GCNNGC | 1 cut(s) | 237 |
| CaiI | CAGNNNCTG | 1 cut(s) | 439 |
| CfoI | GCGC | 2 cut(s) | 134, 308 |
| Cfr13I | GGNCC | 2 cut(s) | 247, 410 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 416, 451 |
| CviAII | CATG | 2 cut(s) | 78, 171 |
| CviJI | RGCY | 8 cut(s) | 29, 64, 161, 175, 334, 373, 411, 439 |
| CviKI_1 | RGCY | 8 cut(s) | 29, 64, 161, 175, 334, 373, 411, 439 |
| DdeI | CTNAG | 2 cut(s) | 162, 360 |
| DpnI | GATC | 1 cut(s) | 426 |
| DpnII | GATC | 1 cut(s) | 424 |
| Eam1104I | CTCTTC | 2 cut(s) | 54, 391 |
| EarI | CTCTTC | 2 cut(s) | 54, 391 |
| Eco47I | GGWCC | 1 cut(s) | 247 |
| Eco57I | CTGAAG | 2 cut(s) | 372, 459 |
| FaeI | CATG | 2 cut(s) | 81, 174 |
| FaiI | YATR | 6 cut(s) | 79, 172, 182, 259, 261, 287 |
| FatI | CATG | 2 cut(s) | 77, 170 |
| FauNDI | CATATG | 1 cut(s) | 259 |
| FbaI | TGATCA | 1 cut(s) | 424 |
| FblI | GTMKAC | 1 cut(s) | 8 |
| Fnu4HI | GCNGC | 4 cut(s) | 42, 130, 225, 455 |
| FokI | GGATG | 2 cut(s) | 99, 454 |
| Fsp4HI | GCNGC | 4 cut(s) | 42, 130, 225, 455 |
| GlaI | GCGC | 2 cut(s) | 133, 307 |
| GluI | GCNGC | 4 cut(s) | 42, 130, 225, 455 |
| HaeII | RGCGCY | 1 cut(s) | 309 |
| HaeIII | GGCC | 1 cut(s) | 411 |
| HapII | CCGG | 1 cut(s) | 228 |
| HhaI | GCGC | 2 cut(s) | 134, 308 |
| Hin1II | CATG | 2 cut(s) | 81, 174 |
| Hin6I | GCGC | 2 cut(s) | 132, 306 |
| HinP1I | GCGC | 2 cut(s) | 132, 306 |
| HincII | GTYRAC | 1 cut(s) | 9 |
| HindII | GTYRAC | 1 cut(s) | 9 |
| HinfI | GANTC | 4 cut(s) | 19, 109, 164, 199 |
| HpaII | CCGG | 1 cut(s) | 228 |
| HphI | GGTGA | 1 cut(s) | 434 |
| Hpy166II | GTNNAC | 2 cut(s) | 9, 250 |
| Hpy188I | TCNGA | 6 cut(s) | 97, 207, 381, 391, 478, 485 |
| Hpy188III | TCNNGA | 1 cut(s) | 428 |
| Hpy8I | GTNNAC | 2 cut(s) | 9, 250 |
| Hpy99I | CGWCG | 2 cut(s) | 76, 247 |
| HpyAV | CCTTC | 1 cut(s) | 102 |
| HpyCH4III | ACNGT | 1 cut(s) | 247 |
| HpyCH4V | TGCA | 2 cut(s) | 257, 301 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 158, 463 |
| HpyF3I | CTNAG | 2 cut(s) | 162, 360 |
| Hsp92II | CATG | 2 cut(s) | 81, 174 |
| HspAI | GCGC | 2 cut(s) | 132, 306 |
| Ksp22I | TGATCA | 1 cut(s) | 424 |
| Kzo9I | GATC | 1 cut(s) | 424 |
| LguI | GCTCTTC | 1 cut(s) | 54 |
| LmnI | GCTCC | 1 cut(s) | 26 |
| LpnPI | CCDG | 8 cut(s) | 134, 143, 207, 241, 306, 311, 426, 446 |
| Lsp1109I | GCAGC | 2 cut(s) | 141, 441 |
| LweI | GCATC | 3 cut(s) | 53, 161, 248 |
| MalI | GATC | 1 cut(s) | 426 |
| MboI | GATC | 1 cut(s) | 424 |
| MboII | GAAGA | 2 cut(s) | 71, 378 |
| MfeI | CAATTG | 1 cut(s) | 54 |
| MluCI | AATT | 2 cut(s) | 54, 263 |
| MlyI | GAGTC | 1 cut(s) | 173 |
| MnlI | CCTC | 4 cut(s) | 31, 213, 343, 414 |
| MseI | TTAA | 2 cut(s) | 368, 417 |
| MspI | CCGG | 1 cut(s) | 228 |
| MspR9I | CCNGG | 1 cut(s) | 229 |
| MunI | CAATTG | 1 cut(s) | 54 |
| MvnI | CGCG | 1 cut(s) | 134 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 158, 463 |
| NciI | CCSGG | 1 cut(s) | 229 |
| NdeI | CATATG | 1 cut(s) | 259 |
| NdeII | GATC | 1 cut(s) | 424 |
| NlaIII | CATG | 2 cut(s) | 81, 174 |
| NlaIV | GGNNCC | 2 cut(s) | 186, 354 |
| PciSI | GCTCTTC | 1 cut(s) | 54 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 14 |
| PfeI | GAWTC | 3 cut(s) | 19, 109, 199 |
| PkrI | GCNGC | 4 cut(s) | 43, 131, 226, 456 |
| PleI | GAGTC | 1 cut(s) | 172 |
| PpsI | GAGTC | 1 cut(s) | 172 |
| PspN4I | GGNNCC | 2 cut(s) | 186, 354 |
| PspPI | GGNCC | 2 cut(s) | 247, 410 |
| PstNI | CAGNNNCTG | 1 cut(s) | 439 |
| SalI | GTCGAC | 1 cut(s) | 7 |
| SapI | GCTCTTC | 1 cut(s) | 54 |
| SaqAI | TTAA | 2 cut(s) | 368, 417 |
| SatI | GCNGC | 4 cut(s) | 42, 130, 225, 455 |
| Sau3AI | GATC | 1 cut(s) | 424 |
| Sau96I | GGNCC | 2 cut(s) | 247, 410 |
| SchI | GAGTC | 1 cut(s) | 173 |
| ScrFI | CCNGG | 1 cut(s) | 229 |
| SetI | ASST | 5 cut(s) | 31, 300, 336, 406, 424 |
| SfaNI | GCATC | 3 cut(s) | 53, 161, 248 |
| SinI | GGWCC | 1 cut(s) | 247 |
| Sse9I | AATT | 2 cut(s) | 54, 263 |
| SsiI | CCGC | 3 cut(s) | 41, 134, 225 |
| StyD4I | CCNGG | 1 cut(s) | 227 |
| TaaI | ACNGT | 1 cut(s) | 247 |
| TaqI | TCGA | 2 cut(s) | 8, 242 |
| TasI | AATT | 2 cut(s) | 54, 263 |
| TauI | GCSGC | 2 cut(s) | 44, 227 |
| TfiI | GAWTC | 3 cut(s) | 19, 109, 199 |
| Tru1I | TTAA | 2 cut(s) | 368, 417 |
| Tru9I | TTAA | 2 cut(s) | 368, 417 |
| TscAI | CASTG | 6 cut(s) | 153, 162, 201, 226, 440, 468 |
| TseI | GCWGC | 2 cut(s) | 129, 454 |
| TspDTI | ATGAA | 2 cut(s) | 101, 276 |
| TspGWI | ACGGA | 1 cut(s) | 60 |
| TspRI | CASTG | 6 cut(s) | 153, 162, 201, 226, 440, 468 |
| VpaK11BI | GGWCC | 1 cut(s) | 247 |
| XmiI | GTMKAC | 1 cut(s) | 8 |