TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 74 - 141 | 1.4e-20 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 438 |
| AccBSI | CCGCTC | 1 cut(s) | 611 |
| AccI | GTMKAC | 1 cut(s) | 768 |
| AccII | CGCG | 1 cut(s) | 117 |
| AciI | CCGC | 3 cut(s) | 117, 611, 807 |
| AclI | AACGTT | 2 cut(s) | 507, 1076 |
| AclWI | GGATC | 1 cut(s) | 216 |
| AcsI | RAATTY | 2 cut(s) | 886, 1036 |
| AcuI | CTGAAG | 1 cut(s) | 206 |
| AcvI | CACGTG | 1 cut(s) | 274 |
| AdeI | CACNNNGTG | 1 cut(s) | 217 |
| AfaI | GTAC | 2 cut(s) | 950, 1162 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 32, 911, 1022 |
| AflII | CTTAAG | 1 cut(s) | 652 |
| AflIII | ACRYGT | 1 cut(s) | 271 |
| AgsI | TTSAA | 2 cut(s) | 13, 896 |
| AjnI | CCWGG | 2 cut(s) | 433, 1115 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 703, 735 |
| AluBI | AGCT | 6 cut(s) | 133, 143, 227, 529, 651, 718 |
| AluI | AGCT | 6 cut(s) | 133, 143, 227, 529, 651, 718 |
| Alw21I | GWGCWC | 2 cut(s) | 327, 1056 |
| Alw26I | GTCTC | 1 cut(s) | 959 |
| Alw44I | GTGCAC | 1 cut(s) | 1052 |
| AlwI | GGATC | 1 cut(s) | 216 |
| Ama87I | CYCGRG | 1 cut(s) | 533 |
| AoxI | GGCC | 3 cut(s) | 76, 336, 668 |
| ApaLI | GTGCAC | 1 cut(s) | 1052 |
| ApeKI | GCWGC | 2 cut(s) | 143, 300 |
| ApoI | RAATTY | 2 cut(s) | 886, 1036 |
| AseI | ATTAAT | 1 cut(s) | 288 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 8, 228 |
| AspS9I | GGNCC | 1 cut(s) | 337 |
| AsuHPI | GGTGA | 2 cut(s) | 269, 414 |
| AvaI | CYCGRG | 1 cut(s) | 533 |
| BaeGI | GKGCMC | 1 cut(s) | 1056 |
| BauI | CACGAG | 1 cut(s) | 1055 |
| BbrPI | CACGTG | 1 cut(s) | 274 |
| Bbv12I | GWGCWC | 2 cut(s) | 327, 1056 |
| BbvI | GCAGC | 2 cut(s) | 130, 312 |
| BccI | CCATC | 5 cut(s) | 26, 146, 194, 629, 703 |
| BceAI | ACGGC | 1 cut(s) | 150 |
| BciT130I | CCWGG | 2 cut(s) | 435, 1117 |
| BcoDI | GTCTC | 1 cut(s) | 959 |
| BfaI | CTAG | 4 cut(s) | 482, 803, 872, 957 |
| BfrI | CTTAAG | 1 cut(s) | 652 |
| BfuAI | ACCTGC | 1 cut(s) | 438 |
| BisI | GCNGC | 2 cut(s) | 144, 301 |
| BlsI | GCNGC | 2 cut(s) | 145, 302 |
| Bme1390I | CCNGG | 2 cut(s) | 435, 1117 |
| BmeT110I | CYCGRG | 1 cut(s) | 533 |
| BmgT120I | GGNCC | 1 cut(s) | 337 |
| BmiI | GGNNCC | 2 cut(s) | 157, 1014 |
| BmrFI | CCNGG | 2 cut(s) | 435, 1117 |
| BmsI | GCATC | 5 cut(s) | 363, 375, 525, 756, 910 |
| BpmI | CTGGAG | 2 cut(s) | 559, 645 |
| BpuEI | CTTGAG | 2 cut(s) | 57, 983 |
| BsaAI | YACGTR | 1 cut(s) | 274 |
| BsaJI | CCNNGG | 4 cut(s) | 433, 534, 737, 1137 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 32, 911, 1022 |
| Bse1I | ACTGG | 1 cut(s) | 974 |
| Bse3DI | GCAATG | 1 cut(s) | 237 |
| BseBI | CCWGG | 2 cut(s) | 435, 1117 |
| BseDI | CCNNGG | 4 cut(s) | 433, 534, 737, 1137 |
| BseGI | GGATG | 5 cut(s) | 37, 378, 695, 901, 1130 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 32, 911, 1022 |
| BseMI | GCAATG | 1 cut(s) | 237 |
| BseNI | ACTGG | 1 cut(s) | 974 |
| BseSI | GKGCMC | 1 cut(s) | 1056 |
| BseXI | GCAGC | 2 cut(s) | 130, 312 |
| BsgI | GTGCAG | 2 cut(s) | 78, 1094 |
| Bsh1236I | CGCG | 1 cut(s) | 117 |
| BshFI | GGCC | 3 cut(s) | 78, 338, 670 |
| BsiHKAI | GWGCWC | 2 cut(s) | 327, 1056 |
| BsiHKCI | CYCGRG | 1 cut(s) | 533 |
| BslFI | GGGAC | 2 cut(s) | 627, 663 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 32, 911, 1022 |
| BsmAI | GTCTC | 1 cut(s) | 959 |
| BsmFI | GGGAC | 2 cut(s) | 627, 663 |
| BsmI | GAATGC | 1 cut(s) | 10 |
| BsnI | GGCC | 3 cut(s) | 78, 338, 670 |
| BsoBI | CYCGRG | 1 cut(s) | 533 |
| Bsp1286I | GDGCHC | 2 cut(s) | 327, 1056 |
| Bsp143I | GATC | 2 cut(s) | 208, 361 |
| BspACI | CCGC | 3 cut(s) | 117, 611, 807 |
| BspANI | GGCC | 3 cut(s) | 78, 338, 670 |
| BspFNI | CGCG | 1 cut(s) | 117 |
| BspHI | TCATGA | 1 cut(s) | 460 |
| BspLI | GGNNCC | 2 cut(s) | 157, 1014 |
| BspMI | ACCTGC | 1 cut(s) | 438 |
| BspPI | GGATC | 1 cut(s) | 216 |
| BspTI | CTTAAG | 1 cut(s) | 652 |
| BsrBI | CCGCTC | 1 cut(s) | 611 |
| BsrDI | GCAATG | 1 cut(s) | 237 |
| BsrI | ACTGG | 1 cut(s) | 974 |
| BssECI | CCNNGG | 4 cut(s) | 433, 534, 737, 1137 |
| BssMI | GATC | 2 cut(s) | 208, 361 |
| BssNAI | GTATAC | 1 cut(s) | 769 |
| BssSI | CACGAG | 1 cut(s) | 1055 |
| BssT1I | CCWWGG | 1 cut(s) | 1137 |
| Bst1107I | GTATAC | 1 cut(s) | 769 |
| Bst2BI | CACGAG | 1 cut(s) | 1055 |
| Bst2UI | CCWGG | 2 cut(s) | 435, 1117 |
| Bst4CI | ACNGT | 5 cut(s) | 97, 420, 476, 677, 1094 |
| BstAFI | CTTAAG | 1 cut(s) | 652 |
| BstBAI | YACGTR | 1 cut(s) | 274 |
| BstF5I | GGATG | 5 cut(s) | 37, 378, 695, 901, 1130 |
| BstFNI | CGCG | 1 cut(s) | 117 |
| BstKTI | GATC | 2 cut(s) | 211, 364 |
| BstMAI | GTCTC | 1 cut(s) | 959 |
| BstMBI | GATC | 2 cut(s) | 208, 361 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 444 |
| BstNI | CCWGG | 2 cut(s) | 435, 1117 |
| BstNSI | RCATGY | 2 cut(s) | 246, 297 |
| BstSCI | CCNGG | 2 cut(s) | 433, 1115 |
| BstSLI | GKGCMC | 1 cut(s) | 1056 |
| BstUI | CGCG | 1 cut(s) | 117 |
| BstV1I | GCAGC | 2 cut(s) | 130, 312 |
| BstZ17I | GTATAC | 1 cut(s) | 769 |
| BsuRI | GGCC | 3 cut(s) | 78, 338, 670 |
| BtsCI | GGATG | 5 cut(s) | 37, 378, 695, 901, 1130 |
| BtsI | GCAGTG | 1 cut(s) | 66 |
| BtsIMutI | CAGTG | 3 cut(s) | 66, 981, 1099 |
| BveI | ACCTGC | 1 cut(s) | 438 |
| CciI | TCATGA | 1 cut(s) | 460 |
| Cfr13I | GGNCC | 1 cut(s) | 337 |
| CseI | GACGC | 1 cut(s) | 624 |
| Csp6I | GTAC | 2 cut(s) | 949, 1161 |
| CviAII | CATG | 6 cut(s) | 243, 294, 461, 580, 997, 1157 |
| CviQI | GTAC | 2 cut(s) | 949, 1161 |
| DpnI | GATC | 2 cut(s) | 210, 363 |
| DpnII | GATC | 2 cut(s) | 208, 361 |
| DraI | TTTAAA | 1 cut(s) | 253 |
| DraIII | CACNNNGTG | 1 cut(s) | 217 |
| Eco130I | CCWWGG | 1 cut(s) | 1137 |
| Eco147I | AGGCCT | 1 cut(s) | 78 |
| Eco57I | CTGAAG | 1 cut(s) | 206 |
| Eco72I | CACGTG | 1 cut(s) | 274 |
| Eco88I | CYCGRG | 1 cut(s) | 533 |
| EcoO109I | RGGNCCY | 1 cut(s) | 337 |
| EcoRII | CCWGG | 2 cut(s) | 433, 1115 |
| EcoT14I | CCWWGG | 1 cut(s) | 1137 |
| EcoT22I | ATGCAT | 1 cut(s) | 295 |
| ErhI | CCWWGG | 1 cut(s) | 1137 |
| FaeI | CATG | 6 cut(s) | 246, 297, 464, 583, 1000, 1160 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 216, 248 |
| FaqI | GGGAC | 2 cut(s) | 627, 663 |
| FatI | CATG | 6 cut(s) | 242, 293, 460, 579, 996, 1156 |
| FauI | CCCGC | 1 cut(s) | 604 |
| FauNDI | CATATG | 2 cut(s) | 602, 732 |
| FblI | GTMKAC | 1 cut(s) | 768 |
| Fnu4HI | GCNGC | 2 cut(s) | 144, 301 |
| FokI | GGATG | 5 cut(s) | 44, 385, 682, 888, 1137 |
| Fsp4HI | GCNGC | 2 cut(s) | 144, 301 |
| FspBI | CTAG | 4 cut(s) | 482, 803, 872, 957 |
| GluI | GCNGC | 2 cut(s) | 144, 301 |
| GsuI | CTGGAG | 2 cut(s) | 559, 645 |
| HaeIII | GGCC | 3 cut(s) | 78, 338, 670 |
| HgaI | GACGC | 1 cut(s) | 624 |
| Hin1II | CATG | 6 cut(s) | 246, 297, 464, 583, 1000, 1160 |
| HindIII | AAGCTT | 1 cut(s) | 225 |
| HinfI | GANTC | 5 cut(s) | 539, 742, 846, 940, 1064 |
| HphI | GGTGA | 2 cut(s) | 269, 414 |
| Hpy166II | GTNNAC | 4 cut(s) | 412, 472, 769, 1054 |
| Hpy188I | TCNGA | 6 cut(s) | 160, 186, 544, 741, 789, 835 |
| Hpy188III | TCNNGA | 7 cut(s) | 233, 370, 413, 461, 624, 843, 872 |
| Hpy8I | GTNNAC | 4 cut(s) | 412, 472, 769, 1054 |
| HpyAV | CCTTC | 5 cut(s) | 19, 89, 214, 915, 1020 |
| HpyCH4III | ACNGT | 5 cut(s) | 97, 420, 476, 677, 1094 |
| HpyCH4IV | ACGT | 4 cut(s) | 55, 273, 507, 1076 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 444 |
| HpySE526I | ACGT | 4 cut(s) | 55, 273, 507, 1076 |
| Hsp92II | CATG | 6 cut(s) | 246, 297, 464, 583, 1000, 1160 |
| Kzo9I | GATC | 2 cut(s) | 208, 361 |
| LmnI | GCTCC | 1 cut(s) | 526 |
| Lsp1109I | GCAGC | 2 cut(s) | 130, 312 |
| LweI | GCATC | 5 cut(s) | 363, 375, 525, 756, 910 |
| MaeI | CTAG | 4 cut(s) | 482, 803, 872, 957 |
| MaeII | ACGT | 4 cut(s) | 55, 273, 507, 1076 |
| MaeIII | GTNAC | 2 cut(s) | 420, 1088 |
| MalI | GATC | 2 cut(s) | 210, 363 |
| MbiI | CCGCTC | 1 cut(s) | 611 |
| MboI | GATC | 2 cut(s) | 208, 361 |
| MboII | GAAGA | 7 cut(s) | 99, 199, 272, 317, 401, 476, 998 |
| MfeI | CAATTG | 1 cut(s) | 1018 |
| MhlI | GDGCHC | 2 cut(s) | 327, 1056 |
| MluCI | AATT | 5 cut(s) | 171, 660, 886, 1018, 1036 |
| MlyI | GAGTC | 3 cut(s) | 751, 949, 1073 |
| MmeI | TCCRAC | 2 cut(s) | 892, 968 |
| MnlI | CCTC | 5 cut(s) | 350, 506, 529, 747, 993 |
| Mph1103I | ATGCAT | 1 cut(s) | 295 |
| MroXI | GAANNNNTTC | 2 cut(s) | 8, 228 |
| MseI | TTAA | 7 cut(s) | 174, 252, 288, 591, 653, 821, 1071 |
| MslI | CAYNNNNRTG | 3 cut(s) | 371, 465, 521 |
| MspCI | CTTAAG | 1 cut(s) | 652 |
| MspR9I | CCNGG | 2 cut(s) | 435, 1117 |
| MunI | CAATTG | 1 cut(s) | 1018 |
| Mva1269I | GAATGC | 1 cut(s) | 10 |
| MvaI | CCWGG | 2 cut(s) | 435, 1117 |
| MvnI | CGCG | 1 cut(s) | 117 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 444 |
| NdeI | CATATG | 2 cut(s) | 602, 732 |
| NdeII | GATC | 2 cut(s) | 208, 361 |
| NlaIII | CATG | 6 cut(s) | 246, 297, 464, 583, 1000, 1160 |
| NlaIV | GGNNCC | 2 cut(s) | 157, 1014 |
| NmeAIII | GCCGAG | 1 cut(s) | 632 |
| NmuCI | GTSAC | 1 cut(s) | 420 |
| NsiI | ATGCAT | 1 cut(s) | 295 |
| NspI | RCATGY | 2 cut(s) | 246, 297 |
| PagI | TCATGA | 1 cut(s) | 460 |
| PceI | AGGCCT | 1 cut(s) | 78 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 61 |
| PctI | GAATGC | 1 cut(s) | 10 |
| PdmI | GAANNNNTTC | 2 cut(s) | 8, 228 |
| PfeI | GAWTC | 2 cut(s) | 539, 846 |
| PfoI | TCCNGGA | 1 cut(s) | 1115 |
| PkrI | GCNGC | 2 cut(s) | 145, 302 |
| PleI | GAGTC | 3 cut(s) | 750, 948, 1072 |
| PmaCI | CACGTG | 1 cut(s) | 274 |
| PmlI | CACGTG | 1 cut(s) | 274 |
| PpsI | GAGTC | 3 cut(s) | 750, 948, 1072 |
| Ppu21I | YACGTR | 1 cut(s) | 274 |
| PshBI | ATTAAT | 1 cut(s) | 288 |
| Psp1406I | AACGTT | 2 cut(s) | 507, 1076 |
| Psp6I | CCWGG | 2 cut(s) | 433, 1115 |
| PspCI | CACGTG | 1 cut(s) | 274 |
| PspGI | CCWGG | 2 cut(s) | 433, 1115 |
| PspN4I | GGNNCC | 2 cut(s) | 157, 1014 |
| PspPI | GGNCC | 1 cut(s) | 337 |
| RsaI | GTAC | 2 cut(s) | 950, 1162 |
| RsaNI | GTAC | 2 cut(s) | 949, 1161 |
| RseI | CAYNNNNRTG | 3 cut(s) | 371, 465, 521 |
| SaqAI | TTAA | 7 cut(s) | 174, 252, 288, 591, 653, 821, 1071 |
| SatI | GCNGC | 2 cut(s) | 144, 301 |
| Sau3AI | GATC | 2 cut(s) | 208, 361 |
| Sau96I | GGNCC | 1 cut(s) | 337 |
| SchI | GAGTC | 3 cut(s) | 751, 949, 1073 |
| ScrFI | CCNGG | 2 cut(s) | 435, 1117 |
| SduI | GDGCHC | 2 cut(s) | 327, 1056 |
| SfaNI | GCATC | 5 cut(s) | 363, 375, 525, 756, 910 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 371, 465, 521 |
| SmlI | CTYRAG | 3 cut(s) | 72, 652, 962 |
| SmoI | CTYRAG | 3 cut(s) | 72, 652, 962 |
| Sse9I | AATT | 5 cut(s) | 171, 660, 886, 1018, 1036 |
| SseBI | AGGCCT | 1 cut(s) | 78 |
| SsiI | CCGC | 3 cut(s) | 117, 611, 807 |
| SspI | AATATT | 1 cut(s) | 493 |
| SspMI | CTAG | 4 cut(s) | 482, 803, 872, 957 |
| StuI | AGGCCT | 1 cut(s) | 78 |
| StyD4I | CCNGG | 2 cut(s) | 433, 1115 |
| StyI | CCWWGG | 1 cut(s) | 1137 |
| TaaI | ACNGT | 5 cut(s) | 97, 420, 476, 677, 1094 |
| TaiI | ACGT | 4 cut(s) | 58, 276, 510, 1079 |
| TaqI | TCGA | 1 cut(s) | 921 |
| TasI | AATT | 5 cut(s) | 171, 660, 886, 1018, 1036 |
| TfiI | GAWTC | 2 cut(s) | 539, 846 |
| Tru1I | TTAA | 7 cut(s) | 174, 252, 288, 591, 653, 821, 1071 |
| Tru9I | TTAA | 7 cut(s) | 174, 252, 288, 591, 653, 821, 1071 |
| TscAI | CASTG | 3 cut(s) | 66, 981, 1099 |
| TseFI | GTSAC | 1 cut(s) | 420 |
| TseI | GCWGC | 2 cut(s) | 143, 300 |
| Tsp45I | GTSAC | 1 cut(s) | 420 |
| TspDTI | ATGAA | 6 cut(s) | 17, 449, 477, 596, 1030, 1049 |
| TspRI | CASTG | 3 cut(s) | 66, 981, 1099 |
| Vha464I | CTTAAG | 1 cut(s) | 652 |
| VneI | GTGCAC | 1 cut(s) | 1052 |
| VspI | ATTAAT | 1 cut(s) | 288 |
| XapI | RAATTY | 2 cut(s) | 886, 1036 |
| XbaI | TCTAGA | 1 cut(s) | 871 |
| XceI | RCATGY | 2 cut(s) | 246, 297 |
| XmiI | GTMKAC | 1 cut(s) | 768 |
| XmnI | GAANNNNTTC | 2 cut(s) | 8, 228 |
| XspI | CTAG | 4 cut(s) | 482, 803, 872, 957 |
| Zsp2I | ATGCAT | 1 cut(s) | 295 |