Transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 692 |
| AccI | GTMKAC | 1 cut(s) | 590 |
| AciI | CCGC | 3 cut(s) | 670, 673, 705 |
| AclWI | GGATC | 2 cut(s) | 375, 970 |
| AcsI | RAATTY | 4 cut(s) | 14, 464, 497, 953 |
| AdeI | CACNNNGTG | 1 cut(s) | 734 |
| AfaI | GTAC | 2 cut(s) | 457, 987 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 353, 676 |
| AgsI | TTSAA | 4 cut(s) | 284, 322, 395, 412 |
| AhlI | ACTAGT | 1 cut(s) | 385 |
| AjiI | CACGTC | 1 cut(s) | 232 |
| AjnI | CCWGG | 4 cut(s) | 295, 519, 601, 714 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 453, 485 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 291, 323 |
| AluBI | AGCT | 4 cut(s) | 622, 702, 783, 971 |
| AluI | AGCT | 4 cut(s) | 622, 702, 783, 971 |
| Alw26I | GTCTC | 1 cut(s) | 486 |
| AlwI | GGATC | 2 cut(s) | 375, 970 |
| AoxI | GGCC | 1 cut(s) | 614 |
| ApeKI | GCWGC | 4 cut(s) | 702, 783, 872, 968 |
| ApoI | RAATTY | 4 cut(s) | 14, 464, 497, 953 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 317, 955 |
| AspLEI | GCGC | 1 cut(s) | 693 |
| AsuHPI | GGTGA | 6 cut(s) | 268, 485, 561, 749, 755, 902 |
| BbvI | GCAGC | 4 cut(s) | 689, 770, 884, 980 |
| BccI | CCATC | 5 cut(s) | 178, 235, 646, 734, 941 |
| BciT130I | CCWGG | 4 cut(s) | 297, 521, 603, 716 |
| BclI | TGATCA | 1 cut(s) | 847 |
| BcoDI | GTCTC | 1 cut(s) | 486 |
| BcuI | ACTAGT | 1 cut(s) | 385 |
| BfaI | CTAG | 1 cut(s) | 386 |
| BfmI | CTRYAG | 1 cut(s) | 778 |
| BisI | GCNGC | 5 cut(s) | 673, 703, 784, 873, 969 |
| BlsI | GCNGC | 5 cut(s) | 674, 704, 785, 874, 970 |
| Bme1390I | CCNGG | 4 cut(s) | 297, 521, 603, 716 |
| BmgBI | CACGTC | 1 cut(s) | 232 |
| BmrFI | CCNGG | 4 cut(s) | 297, 521, 603, 716 |
| BmsI | GCATC | 6 cut(s) | 560, 633, 787, 799, 805, 859 |
| BpmI | CTGGAG | 1 cut(s) | 187 |
| BpuEI | CTTGAG | 2 cut(s) | 56, 631 |
| Bsa29I | ATCGAT | 1 cut(s) | 641 |
| BsaJI | CCNNGG | 2 cut(s) | 519, 520 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 353, 676 |
| Bse1I | ACTGG | 2 cut(s) | 126, 756 |
| BseBI | CCWGG | 4 cut(s) | 297, 521, 603, 716 |
| BseCI | ATCGAT | 1 cut(s) | 641 |
| BseDI | CCNNGG | 2 cut(s) | 519, 520 |
| BseGI | GGATG | 1 cut(s) | 340 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 353, 676 |
| BseMII | CTCAG | 2 cut(s) | 502, 899 |
| BseNI | ACTGG | 2 cut(s) | 126, 756 |
| BseXI | GCAGC | 4 cut(s) | 689, 770, 884, 980 |
| BshFI | GGCC | 1 cut(s) | 616 |
| BshVI | ATCGAT | 1 cut(s) | 641 |
| BslFI | GGGAC | 1 cut(s) | 918 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 353, 676 |
| BsmAI | GTCTC | 1 cut(s) | 486 |
| BsmFI | GGGAC | 1 cut(s) | 918 |
| BsnI | GGCC | 1 cut(s) | 616 |
| Bsp143I | GATC | 3 cut(s) | 367, 847, 962 |
| BspACI | CCGC | 3 cut(s) | 670, 673, 705 |
| BspANI | GGCC | 1 cut(s) | 616 |
| BspCNI | CTCAG | 2 cut(s) | 501, 900 |
| BspDI | ATCGAT | 1 cut(s) | 641 |
| BspPI | GGATC | 2 cut(s) | 375, 970 |
| BsrI | ACTGG | 2 cut(s) | 126, 756 |
| BssECI | CCNNGG | 2 cut(s) | 519, 520 |
| BssMI | GATC | 3 cut(s) | 367, 847, 962 |
| BssNAI | GTATAC | 1 cut(s) | 591 |
| Bst1107I | GTATAC | 1 cut(s) | 591 |
| Bst2UI | CCWGG | 4 cut(s) | 297, 521, 603, 716 |
| Bst4CI | ACNGT | 3 cut(s) | 326, 407, 985 |
| Bst6I | CTCTTC | 1 cut(s) | 765 |
| BstDEI | CTNAG | 2 cut(s) | 488, 908 |
| BstF5I | GGATG | 1 cut(s) | 340 |
| BstHHI | GCGC | 1 cut(s) | 693 |
| BstKTI | GATC | 3 cut(s) | 370, 850, 965 |
| BstMAI | GTCTC | 1 cut(s) | 486 |
| BstMBI | GATC | 3 cut(s) | 367, 847, 962 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 699 |
| BstNI | CCWGG | 4 cut(s) | 297, 521, 603, 716 |
| BstSCI | CCNGG | 4 cut(s) | 295, 519, 601, 714 |
| BstSFI | CTRYAG | 1 cut(s) | 778 |
| BstV1I | GCAGC | 4 cut(s) | 689, 770, 884, 980 |
| BstZ17I | GTATAC | 1 cut(s) | 591 |
| Bsu15I | ATCGAT | 1 cut(s) | 641 |
| BsuRI | GGCC | 1 cut(s) | 616 |
| BsuTUI | ATCGAT | 1 cut(s) | 641 |
| BtrI | CACGTC | 1 cut(s) | 232 |
| BtsCI | GGATG | 1 cut(s) | 340 |
| BtsIMutI | CAGTG | 1 cut(s) | 119 |
| CfoI | GCGC | 1 cut(s) | 693 |
| ClaI | ATCGAT | 1 cut(s) | 641 |
| CsiI | ACCWGGT | 1 cut(s) | 601 |
| Csp6I | GTAC | 2 cut(s) | 456, 986 |
| CviAII | CATG | 4 cut(s) | 575, 676, 731, 845 |
| CviJI | RGCY | 9 cut(s) | 225, 583, 616, 622, 702, 719, 783, 935, 971 |
| CviKI_1 | RGCY | 9 cut(s) | 225, 583, 616, 622, 702, 719, 783, 935, 971 |
| CviQI | GTAC | 2 cut(s) | 456, 986 |
| DdeI | CTNAG | 2 cut(s) | 488, 908 |
| DpnI | GATC | 3 cut(s) | 369, 849, 964 |
| DpnII | GATC | 3 cut(s) | 367, 847, 962 |
| DraIII | CACNNNGTG | 1 cut(s) | 734 |
| Eam1104I | CTCTTC | 1 cut(s) | 765 |
| EarI | CTCTTC | 1 cut(s) | 765 |
| EciI | GGCGGA | 1 cut(s) | 659 |
| EcoRII | CCWGG | 4 cut(s) | 295, 519, 601, 714 |
| EcoT22I | ATGCAT | 1 cut(s) | 553 |
| FaeI | CATG | 4 cut(s) | 578, 679, 734, 848 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 173, 205 |
| FaqI | GGGAC | 1 cut(s) | 918 |
| FatI | CATG | 4 cut(s) | 574, 675, 730, 844 |
| FbaI | TGATCA | 1 cut(s) | 847 |
| FblI | GTMKAC | 1 cut(s) | 590 |
| Fnu4HI | GCNGC | 5 cut(s) | 673, 703, 784, 873, 969 |
| FokI | GGATG | 1 cut(s) | 347 |
| Fsp4HI | GCNGC | 5 cut(s) | 673, 703, 784, 873, 969 |
| FspBI | CTAG | 1 cut(s) | 386 |
| FspI | TGCGCA | 1 cut(s) | 692 |
| GlaI | GCGC | 1 cut(s) | 692 |
| GluI | GCNGC | 5 cut(s) | 673, 703, 784, 873, 969 |
| GsuI | CTGGAG | 1 cut(s) | 187 |
| HaeIII | GGCC | 1 cut(s) | 616 |
| HhaI | GCGC | 1 cut(s) | 693 |
| Hin1II | CATG | 4 cut(s) | 578, 679, 734, 848 |
| Hin6I | GCGC | 1 cut(s) | 691 |
| HinP1I | GCGC | 1 cut(s) | 691 |
| HincII | GTYRAC | 1 cut(s) | 22 |
| HindII | GTYRAC | 1 cut(s) | 22 |
| HinfI | GANTC | 5 cut(s) | 55, 259, 566, 634, 913 |
| HpaI | GTTAAC | 1 cut(s) | 22 |
| HphI | GGTGA | 6 cut(s) | 268, 485, 561, 749, 755, 902 |
| Hpy166II | GTNNAC | 4 cut(s) | 22, 383, 591, 712 |
| Hpy188I | TCNGA | 6 cut(s) | 312, 451, 491, 835, 862, 979 |
| Hpy188III | TCNNGA | 5 cut(s) | 204, 536, 555, 610, 960 |
| Hpy8I | GTNNAC | 4 cut(s) | 22, 383, 591, 712 |
| HpyCH4III | ACNGT | 3 cut(s) | 326, 407, 985 |
| HpyCH4IV | ACGT | 1 cut(s) | 231 |
| HpyCH4V | TGCA | 8 cut(s) | 6, 51, 114, 551, 800, 812, 818, 872 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 699 |
| HpyF3I | CTNAG | 2 cut(s) | 488, 908 |
| HpySE526I | ACGT | 1 cut(s) | 231 |
| Hsp92II | CATG | 4 cut(s) | 578, 679, 734, 848 |
| HspAI | GCGC | 1 cut(s) | 691 |
| Ksp22I | TGATCA | 1 cut(s) | 847 |
| KspAI | GTTAAC | 1 cut(s) | 22 |
| Kzo9I | GATC | 3 cut(s) | 367, 847, 962 |
| LmnI | GCTCC | 2 cut(s) | 206, 976 |
| Lsp1109I | GCAGC | 4 cut(s) | 689, 770, 884, 980 |
| LweI | GCATC | 6 cut(s) | 560, 633, 787, 799, 805, 859 |
| MabI | ACCWGGT | 1 cut(s) | 601 |
| MaeI | CTAG | 1 cut(s) | 386 |
| MaeII | ACGT | 1 cut(s) | 231 |
| MaeIII | GTNAC | 3 cut(s) | 212, 567, 890 |
| MalI | GATC | 3 cut(s) | 369, 849, 964 |
| MboI | GATC | 3 cut(s) | 367, 847, 962 |
| MboII | GAAGA | 5 cut(s) | 50, 157, 473, 773, 782 |
| MfeI | CAATTG | 1 cut(s) | 196 |
| MluCI | AATT | 8 cut(s) | 14, 66, 196, 464, 497, 660, 829, 953 |
| MlyI | GAGTC | 2 cut(s) | 575, 643 |
| MnlI | CCTC | 9 cut(s) | 411, 412, 541, 553, 582, 606, 814, 903, 985 |
| Mph1103I | ATGCAT | 1 cut(s) | 553 |
| MroXI | GAANNNNTTC | 2 cut(s) | 317, 955 |
| MseI | TTAA | 3 cut(s) | 21, 696, 828 |
| MslI | CAYNNNNRTG | 2 cut(s) | 428, 735 |
| MspA1I | CMGCKG | 1 cut(s) | 783 |
| MspR9I | CCNGG | 4 cut(s) | 297, 521, 603, 716 |
| MunI | CAATTG | 1 cut(s) | 196 |
| MvaI | CCWGG | 4 cut(s) | 297, 521, 603, 716 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 699 |
| NdeII | GATC | 3 cut(s) | 367, 847, 962 |
| NlaIII | CATG | 4 cut(s) | 578, 679, 734, 848 |
| NmuCI | GTSAC | 3 cut(s) | 212, 567, 890 |
| NsbI | TGCGCA | 1 cut(s) | 692 |
| NsiI | ATGCAT | 1 cut(s) | 553 |
| PasI | CCCWGGG | 1 cut(s) | 520 |
| PdmI | GAANNNNTTC | 2 cut(s) | 317, 955 |
| PfeI | GAWTC | 3 cut(s) | 55, 259, 913 |
| PflFI | GACNNNGTC | 1 cut(s) | 633 |
| PfoI | TCCNGGA | 1 cut(s) | 295 |
| PkrI | GCNGC | 5 cut(s) | 674, 704, 785, 874, 970 |
| PleI | GAGTC | 2 cut(s) | 574, 642 |
| PpsI | GAGTC | 2 cut(s) | 574, 642 |
| Psp6I | CCWGG | 4 cut(s) | 295, 519, 601, 714 |
| PspGI | CCWGG | 4 cut(s) | 295, 519, 601, 714 |
| PsyI | GACNNNGTC | 1 cut(s) | 633 |
| PvuII | CAGCTG | 1 cut(s) | 783 |
| RsaI | GTAC | 2 cut(s) | 457, 987 |
| RsaNI | GTAC | 2 cut(s) | 456, 986 |
| RseI | CAYNNNNRTG | 2 cut(s) | 428, 735 |
| SaqAI | TTAA | 3 cut(s) | 21, 696, 828 |
| SatI | GCNGC | 5 cut(s) | 673, 703, 784, 873, 969 |
| Sau3AI | GATC | 3 cut(s) | 367, 847, 962 |
| SchI | GAGTC | 2 cut(s) | 575, 643 |
| ScrFI | CCNGG | 4 cut(s) | 297, 521, 603, 716 |
| SexAI | ACCWGGT | 1 cut(s) | 601 |
| SfaNI | GCATC | 6 cut(s) | 560, 633, 787, 799, 805, 859 |
| SfcI | CTRYAG | 1 cut(s) | 778 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 428, 735 |
| SmlI | CTYRAG | 2 cut(s) | 35, 610 |
| SmoI | CTYRAG | 2 cut(s) | 35, 610 |
| SpeI | ACTAGT | 1 cut(s) | 385 |
| Sse9I | AATT | 8 cut(s) | 14, 66, 196, 464, 497, 660, 829, 953 |
| SsiI | CCGC | 3 cut(s) | 670, 673, 705 |
| SspMI | CTAG | 1 cut(s) | 386 |
| StyD4I | CCNGG | 4 cut(s) | 295, 519, 601, 714 |
| TaaI | ACNGT | 3 cut(s) | 326, 407, 985 |
| TaiI | ACGT | 1 cut(s) | 234 |
| TaqI | TCGA | 3 cut(s) | 61, 143, 641 |
| TasI | AATT | 8 cut(s) | 14, 66, 196, 464, 497, 660, 829, 953 |
| TatI | WGTACW | 1 cut(s) | 455 |
| TauI | GCSGC | 1 cut(s) | 675 |
| TfiI | GAWTC | 3 cut(s) | 55, 259, 913 |
| Tru1I | TTAA | 3 cut(s) | 21, 696, 828 |
| Tru9I | TTAA | 3 cut(s) | 21, 696, 828 |
| TscAI | CASTG | 1 cut(s) | 126 |
| TseFI | GTSAC | 3 cut(s) | 212, 567, 890 |
| TseI | GCWGC | 4 cut(s) | 702, 783, 872, 968 |
| Tsp45I | GTSAC | 3 cut(s) | 212, 567, 890 |
| TspDTI | ATGAA | 3 cut(s) | 318, 774, 783 |
| TspGWI | ACGGA | 1 cut(s) | 380 |
| TspRI | CASTG | 1 cut(s) | 126 |
| Tth111I | GACNNNGTC | 1 cut(s) | 633 |
| XapI | RAATTY | 4 cut(s) | 14, 464, 497, 953 |
| XmiI | GTMKAC | 1 cut(s) | 590 |
| XmnI | GAANNNNTTC | 2 cut(s) | 317, 955 |
| XspI | CTAG | 1 cut(s) | 386 |
| Zsp2I | ATGCAT | 1 cut(s) | 553 |