TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 1 - 151 | 6.5e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 221 - 291 | 8.7e-18 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_4 | PF12799 | 502 - 545 | 3e-07 | Leucine Rich repeats (2 copies) |
| LRR_14 | PF23598 | 515 - 646 | 5.3e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 617 - 701 | 4.4e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 643 - 717 | 8.8e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 689 - 862 | 1.3e-21 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 714 - 772 | 9e-07 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 215, 1943 |
| AccI | GTMKAC | 2 cut(s) | 921, 2636 |
| AccII | CGCG | 1 cut(s) | 2750 |
| AccIII | TCCGGA | 1 cut(s) | 2572 |
| AciI | CCGC | 9 cut(s) | 465, 1809, 2530, 2582, 2669, 2743, 2748, 2750, 2796 |
| AclI | AACGTT | 2 cut(s) | 352, 2589 |
| AclWI | GGATC | 2 cut(s) | 244, 2229 |
| AcuI | CTGAAG | 2 cut(s) | 2889, 2967 |
| AcyI | GRCGYC | 2 cut(s) | 2672, 2740 |
| AfaI | GTAC | 2 cut(s) | 949, 1261 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 464, 1648, 1983, 2749, 2866, 2936 |
| AflIII | ACRYGT | 2 cut(s) | 487, 1238 |
| AhlI | ACTAGT | 2 cut(s) | 86, 2314 |
| AjiI | CACGTC | 1 cut(s) | 262 |
| Alw26I | GTCTC | 5 cut(s) | 139, 2137, 2399, 2551, 2964 |
| AlwI | GGATC | 2 cut(s) | 244, 2229 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2956 |
| Ama87I | CYCGRG | 1 cut(s) | 316 |
| Aor13HI | TCCGGA | 1 cut(s) | 2572 |
| AoxI | GGCC | 5 cut(s) | 124, 313, 508, 786, 2926 |
| ApeKI | GCWGC | 3 cut(s) | 894, 2259, 2971 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 669 |
| AspLEI | GCGC | 2 cut(s) | 133, 2825 |
| AspS9I | GGNCC | 6 cut(s) | 314, 599, 973, 2008, 2806, 2927 |
| AsuC2I | CCSGG | 3 cut(s) | 317, 318, 885 |
| AsuHPI | GGTGA | 7 cut(s) | 196, 710, 769, 864, 2312, 2503, 2951 |
| AvaI | CYCGRG | 1 cut(s) | 316 |
| AvaII | GGWCC | 4 cut(s) | 599, 973, 2008, 2806 |
| AxyI | CCTNAGG | 1 cut(s) | 2012 |
| BauI | CACGAG | 2 cut(s) | 2554, 2922 |
| BbsI | GAAGAC | 2 cut(s) | 2489, 2712 |
| BbvI | GCAGC | 3 cut(s) | 906, 2271, 2958 |
| BccI | CCATC | 8 cut(s) | 304, 1147, 1912, 2125, 2348, 2797, 2835, 2983 |
| BceAI | ACGGC | 2 cut(s) | 2026, 2662 |
| BciVI | GTATCC | 1 cut(s) | 1687 |
| BclI | TGATCA | 3 cut(s) | 196, 811, 2941 |
| BcnI | CCSGG | 3 cut(s) | 317, 318, 885 |
| BcoDI | GTCTC | 5 cut(s) | 139, 2137, 2399, 2551, 2964 |
| BcuI | ACTAGT | 2 cut(s) | 86, 2314 |
| BfaI | CTAG | 7 cut(s) | 87, 128, 273, 647, 728, 2315, 2381 |
| BfmI | CTRYAG | 1 cut(s) | 1857 |
| BfoI | RGCGCY | 1 cut(s) | 2826 |
| BfuI | GTATCC | 1 cut(s) | 1687 |
| BglII | AGATCT | 1 cut(s) | 110 |
| BisI | GCNGC | 6 cut(s) | 895, 2260, 2670, 2743, 2796, 2972 |
| BlsI | GCNGC | 6 cut(s) | 896, 2261, 2671, 2744, 2797, 2973 |
| Bme1390I | CCNGG | 3 cut(s) | 317, 318, 885 |
| Bme18I | GGWCC | 4 cut(s) | 599, 973, 2008, 2806 |
| BmeT110I | CYCGRG | 1 cut(s) | 316 |
| BmgBI | CACGTC | 1 cut(s) | 262 |
| BmgT120I | GGNCC | 6 cut(s) | 314, 599, 973, 2008, 2806, 2927 |
| BmiI | GGNNCC | 2 cut(s) | 2808, 2871 |
| BmrFI | CCNGG | 3 cut(s) | 317, 318, 885 |
| BmrI | ACTGGG | 1 cut(s) | 2924 |
| BmsI | GCATC | 7 cut(s) | 631, 813, 1978, 2071, 2081, 2393, 2807 |
| BmuI | ACTGGG | 1 cut(s) | 2924 |
| BoxI | GACNNNNGTC | 1 cut(s) | 264 |
| BpiI | GAAGAC | 2 cut(s) | 2489, 2712 |
| BpmI | CTGGAG | 1 cut(s) | 2642 |
| BpuEI | CTTGAG | 7 cut(s) | 1306, 1375, 1444, 1582, 1651, 1948, 2161 |
| BpuMI | CCSGG | 3 cut(s) | 317, 318, 885 |
| Bsa29I | ATCGAT | 1 cut(s) | 2801 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1675 |
| BsaHI | GRCGYC | 2 cut(s) | 2672, 2740 |
| BsaJI | CCNNGG | 5 cut(s) | 316, 505, 884, 2563, 2748 |
| BsaWI | WCCGGW | 2 cut(s) | 2546, 2572 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 2618, 2648, 2772, 2802, 2827, 2857 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 464, 1648, 1983, 2749, 2866, 2936 |
| Bse1I | ACTGG | 6 cut(s) | 25, 1093, 2106, 2625, 2930, 2950 |
| Bse21I | CCTNAGG | 1 cut(s) | 2012 |
| Bse3DI | GCAATG | 1 cut(s) | 1136 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1675 |
| BseAI | TCCGGA | 1 cut(s) | 2572 |
| BseCI | ATCGAT | 1 cut(s) | 2801 |
| BseDI | CCNNGG | 5 cut(s) | 316, 505, 884, 2563, 2748 |
| BseJI | GATNNNNATC | 1 cut(s) | 1675 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 464, 1648, 1983, 2749, 2866, 2936 |
| BseMI | GCAATG | 1 cut(s) | 1136 |
| BseNI | ACTGG | 6 cut(s) | 25, 1093, 2106, 2625, 2930, 2950 |
| BseRI | GAGGAG | 2 cut(s) | 578, 2639 |
| BseXI | GCAGC | 3 cut(s) | 906, 2271, 2958 |
| BseYI | CCCAGC | 1 cut(s) | 2448 |
| BsgI | GTGCAG | 1 cut(s) | 2278 |
| Bsh1236I | CGCG | 1 cut(s) | 2750 |
| BshFI | GGCC | 5 cut(s) | 126, 315, 510, 788, 2928 |
| BshVI | ATCGAT | 1 cut(s) | 2801 |
| BsiHKCI | CYCGRG | 1 cut(s) | 316 |
| BsiSI | CCGG | 4 cut(s) | 317, 884, 2547, 2573 |
| BslFI | GGGAC | 5 cut(s) | 31, 182, 1227, 2030, 2792 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 464, 1648, 1983, 2749, 2866, 2936 |
| BsmAI | GTCTC | 5 cut(s) | 139, 2137, 2399, 2551, 2964 |
| BsmFI | GGGAC | 5 cut(s) | 31, 182, 1227, 2030, 2792 |
| BsmI | GAATGC | 5 cut(s) | 231, 440, 966, 1009, 2309 |
| BsnI | GGCC | 5 cut(s) | 126, 315, 510, 788, 2928 |
| BsoBI | CYCGRG | 1 cut(s) | 316 |
| Bsp13I | TCCGGA | 1 cut(s) | 2572 |
| Bsp1407I | TGTACA | 1 cut(s) | 1259 |
| Bsp143I | GATC | 8 cut(s) | 110, 196, 249, 406, 811, 983, 2221, 2941 |
| BspACI | CCGC | 9 cut(s) | 465, 1809, 2530, 2582, 2669, 2743, 2748, 2750, 2796 |
| BspANI | GGCC | 5 cut(s) | 126, 315, 510, 788, 2928 |
| BspDI | ATCGAT | 1 cut(s) | 2801 |
| BspEI | TCCGGA | 1 cut(s) | 2572 |
| BspFNI | CGCG | 1 cut(s) | 2750 |
| BspHI | TCATGA | 1 cut(s) | 367 |
| BspLI | GGNNCC | 2 cut(s) | 2808, 2871 |
| BspPI | GGATC | 2 cut(s) | 244, 2229 |
| BspQI | GCTCTTC | 1 cut(s) | 2682 |
| BsrDI | GCAATG | 1 cut(s) | 1136 |
| BsrGI | TGTACA | 1 cut(s) | 1259 |
| BsrI | ACTGG | 6 cut(s) | 25, 1093, 2106, 2625, 2930, 2950 |
| BssECI | CCNNGG | 5 cut(s) | 316, 505, 884, 2563, 2748 |
| BssMI | GATC | 8 cut(s) | 110, 196, 249, 406, 811, 983, 2221, 2941 |
| BssNI | GRCGYC | 2 cut(s) | 2672, 2740 |
| BssSI | CACGAG | 2 cut(s) | 2554, 2922 |
| BssT1I | CCWWGG | 1 cut(s) | 505 |
| Bst2BI | CACGAG | 2 cut(s) | 2554, 2922 |
| Bst4CI | ACNGT | 3 cut(s) | 2021, 2256, 2286 |
| Bst6I | CTCTTC | 3 cut(s) | 1908, 2682, 2908 |
| BstACI | GRCGYC | 2 cut(s) | 2672, 2740 |
| BstAUI | TGTACA | 1 cut(s) | 1259 |
| BstC8I | GCNNGC | 7 cut(s) | 434, 438, 685, 736, 1886, 2363, 2506 |
| BstDEI | CTNAG | 5 cut(s) | 289, 532, 632, 1034, 2012 |
| BstDSI | CCRYGG | 1 cut(s) | 2748 |
| BstFNI | CGCG | 1 cut(s) | 2750 |
| BstH2I | RGCGCY | 1 cut(s) | 2826 |
| BstHHI | GCGC | 2 cut(s) | 133, 2825 |
| BstKTI | GATC | 8 cut(s) | 113, 199, 252, 409, 814, 986, 2224, 2944 |
| BstMAI | GTCTC | 5 cut(s) | 139, 2137, 2399, 2551, 2964 |
| BstMBI | GATC | 8 cut(s) | 110, 196, 249, 406, 811, 983, 2221, 2941 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1111, 1993, 2081, 2386 |
| BstNSI | RCATGY | 4 cut(s) | 440, 491, 707, 1242 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 264 |
| BstSCI | CCNGG | 3 cut(s) | 315, 316, 883 |
| BstSFI | CTRYAG | 1 cut(s) | 1857 |
| BstUI | CGCG | 1 cut(s) | 2750 |
| BstV1I | GCAGC | 3 cut(s) | 906, 2271, 2958 |
| BstV2I | GAAGAC | 2 cut(s) | 2489, 2712 |
| BstX2I | RGATCY | 2 cut(s) | 110, 2221 |
| BstYI | RGATCY | 2 cut(s) | 110, 2221 |
| Bsu15I | ATCGAT | 1 cut(s) | 2801 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2012 |
| BsuI | GTATCC | 1 cut(s) | 1687 |
| BsuRI | GGCC | 5 cut(s) | 126, 315, 510, 788, 2928 |
| BsuTUI | ATCGAT | 1 cut(s) | 2801 |
| BtgI | CCRYGG | 1 cut(s) | 2748 |
| BtrI | CACGTC | 1 cut(s) | 262 |
| BtsI | GCAGTG | 2 cut(s) | 196, 2170 |
| BtsIMutI | CAGTG | 3 cut(s) | 196, 2170, 2957 |
| Cac8I | GCNNGC | 7 cut(s) | 434, 438, 685, 736, 1886, 2363, 2506 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2956 |
| CciI | TCATGA | 1 cut(s) | 367 |
| CfoI | GCGC | 2 cut(s) | 133, 2825 |
| Cfr13I | GGNCC | 6 cut(s) | 314, 599, 973, 2008, 2806, 2927 |
| Cfr42I | CCGCGG | 1 cut(s) | 2751 |
| Cfr9I | CCCGGG | 1 cut(s) | 316 |
| ClaI | ATCGAT | 1 cut(s) | 2801 |
| CseI | GACGC | 2 cut(s) | 2661, 2748 |
| Csp6I | GTAC | 2 cut(s) | 948, 1260 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2933, 2968 |
| CviQI | GTAC | 2 cut(s) | 948, 1260 |
| DdeI | CTNAG | 5 cut(s) | 289, 532, 632, 1034, 2012 |
| DpnI | GATC | 8 cut(s) | 112, 198, 251, 408, 813, 985, 2223, 2943 |
| DpnII | GATC | 8 cut(s) | 110, 196, 249, 406, 811, 983, 2221, 2941 |
| DraI | TTTAAA | 2 cut(s) | 660, 694 |
| Eam1104I | CTCTTC | 3 cut(s) | 1908, 2682, 2908 |
| EarI | CTCTTC | 3 cut(s) | 1908, 2682, 2908 |
| EciI | GGCGGA | 1 cut(s) | 2571 |
| Eco130I | CCWWGG | 1 cut(s) | 505 |
| Eco147I | AGGCCT | 2 cut(s) | 510, 788 |
| Eco47I | GGWCC | 4 cut(s) | 599, 973, 2008, 2806 |
| Eco57I | CTGAAG | 2 cut(s) | 2889, 2967 |
| Eco81I | CCTNAGG | 1 cut(s) | 2012 |
| Eco88I | CYCGRG | 1 cut(s) | 316 |
| EcoO109I | RGGNCCY | 2 cut(s) | 599, 973 |
| EcoRI | GAATTC | 4 cut(s) | 327, 1293, 2568, 2770 |
| EcoT14I | CCWWGG | 1 cut(s) | 505 |
| EcoT22I | ATGCAT | 2 cut(s) | 442, 828 |
| ErhI | CCWWGG | 1 cut(s) | 505 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1936, 1968 |
| FaqI | GGGAC | 5 cut(s) | 31, 182, 1227, 2030, 2792 |
| FauNDI | CATATG | 1 cut(s) | 11 |
| FbaI | TGATCA | 3 cut(s) | 196, 811, 2941 |
| FblI | GTMKAC | 2 cut(s) | 921, 2636 |
| Fnu4HI | GCNGC | 6 cut(s) | 895, 2260, 2670, 2743, 2796, 2972 |
| Fsp4HI | GCNGC | 6 cut(s) | 895, 2260, 2670, 2743, 2796, 2972 |
| FspBI | CTAG | 7 cut(s) | 87, 128, 273, 647, 728, 2315, 2381 |
| GlaI | GCGC | 2 cut(s) | 132, 2824 |
| GluI | GCNGC | 6 cut(s) | 895, 2260, 2670, 2743, 2796, 2972 |
| GsaI | CCCAGC | 1 cut(s) | 2452 |
| GsuI | CTGGAG | 1 cut(s) | 2642 |
| HaeII | RGCGCY | 1 cut(s) | 2826 |
| HaeIII | GGCC | 5 cut(s) | 126, 315, 510, 788, 2928 |
| HapII | CCGG | 4 cut(s) | 317, 884, 2547, 2573 |
| HgaI | GACGC | 2 cut(s) | 2661, 2748 |
| HhaI | GCGC | 2 cut(s) | 133, 2825 |
| Hin1I | GRCGYC | 2 cut(s) | 2672, 2740 |
| Hin6I | GCGC | 2 cut(s) | 131, 2823 |
| HinP1I | GCGC | 2 cut(s) | 131, 2823 |
| HincII | GTYRAC | 1 cut(s) | 2637 |
| HindII | GTYRAC | 1 cut(s) | 2637 |
| HindIII | AAGCTT | 4 cut(s) | 732, 1012, 1787, 1886 |
| HpaII | CCGG | 4 cut(s) | 317, 884, 2547, 2573 |
| HphI | GGTGA | 7 cut(s) | 196, 710, 769, 864, 2312, 2503, 2951 |
| Hpy166II | GTNNAC | 2 cut(s) | 922, 2637 |
| Hpy8I | GTNNAC | 2 cut(s) | 922, 2637 |
| Hpy99I | CGWCG | 3 cut(s) | 2677, 2704, 2742 |
| HpyAV | CCTTC | 3 cut(s) | 175, 521, 1646 |
| HpyCH4III | ACNGT | 3 cut(s) | 2021, 2256, 2286 |
| HpyCH4IV | ACGT | 5 cut(s) | 261, 352, 927, 1216, 2589 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1111, 1993, 2081, 2386 |
| HpyF3I | CTNAG | 5 cut(s) | 289, 532, 632, 1034, 2012 |
| HpySE526I | ACGT | 5 cut(s) | 261, 352, 927, 1216, 2589 |
| Hsp92I | GRCGYC | 2 cut(s) | 2672, 2740 |
| HspAI | GCGC | 2 cut(s) | 131, 2823 |
| Kpn2I | TCCGGA | 1 cut(s) | 2572 |
| Ksp22I | TGATCA | 3 cut(s) | 196, 811, 2941 |
| KspI | CCGCGG | 1 cut(s) | 2751 |
| Kzo9I | GATC | 8 cut(s) | 110, 196, 249, 406, 811, 983, 2221, 2941 |
| LguI | GCTCTTC | 1 cut(s) | 2682 |
| LmnI | GCTCC | 2 cut(s) | 2575, 2654 |
| Lsp1109I | GCAGC | 3 cut(s) | 906, 2271, 2958 |
| LweI | GCATC | 7 cut(s) | 631, 813, 1978, 2071, 2081, 2393, 2807 |
| MaeI | CTAG | 7 cut(s) | 87, 128, 273, 647, 728, 2315, 2381 |
| MaeII | ACGT | 5 cut(s) | 261, 352, 927, 1216, 2589 |
| MaeIII | GTNAC | 5 cut(s) | 870, 1187, 1436, 1792, 2165 |
| MalI | GATC | 8 cut(s) | 112, 198, 251, 408, 813, 985, 2223, 2943 |
| MboI | GATC | 8 cut(s) | 110, 196, 249, 406, 811, 983, 2221, 2941 |
| MfeI | CAATTG | 3 cut(s) | 42, 2190, 2682 |
| MflI | RGATCY | 2 cut(s) | 110, 2221 |
| MlyI | GAGTC | 7 cut(s) | 164, 274, 878, 1195, 2195, 2431, 2553 |
| MmeI | TCCRAC | 7 cut(s) | 1113, 1293, 1362, 1500, 1569, 1707, 2351 |
| Mph1103I | ATGCAT | 2 cut(s) | 442, 828 |
| MroI | TCCGGA | 1 cut(s) | 2572 |
| MroXI | GAANNNNTTC | 1 cut(s) | 669 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1204, 2461 |
| MspA1I | CMGCKG | 1 cut(s) | 2750 |
| MspI | CCGG | 4 cut(s) | 317, 884, 2547, 2573 |
| MspR9I | CCNGG | 3 cut(s) | 317, 318, 885 |
| MunI | CAATTG | 3 cut(s) | 42, 2190, 2682 |
| Mva1269I | GAATGC | 5 cut(s) | 231, 440, 966, 1009, 2309 |
| MvnI | CGCG | 1 cut(s) | 2750 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1111, 1993, 2081, 2386 |
| NciI | CCSGG | 3 cut(s) | 317, 318, 885 |
| NdeI | CATATG | 1 cut(s) | 11 |
| NdeII | GATC | 8 cut(s) | 110, 196, 249, 406, 811, 983, 2221, 2941 |
| NlaIV | GGNNCC | 2 cut(s) | 2808, 2871 |
| NmuCI | GTSAC | 3 cut(s) | 870, 1187, 2165 |
| NsiI | ATGCAT | 2 cut(s) | 442, 828 |
| NspI | RCATGY | 4 cut(s) | 440, 491, 707, 1242 |
| PaeI | GCATGC | 1 cut(s) | 440 |
| PagI | TCATGA | 1 cut(s) | 367 |
| PceI | AGGCCT | 2 cut(s) | 510, 788 |
| PciI | ACATGT | 2 cut(s) | 487, 1238 |
| PciSI | GCTCTTC | 1 cut(s) | 2682 |
| PctI | GAATGC | 5 cut(s) | 231, 440, 966, 1009, 2309 |
| PdmI | GAANNNNTTC | 1 cut(s) | 669 |
| PkrI | GCNGC | 6 cut(s) | 896, 2261, 2671, 2744, 2797, 2973 |
| PleI | GAGTC | 7 cut(s) | 164, 273, 877, 1194, 2194, 2431, 2553 |
| PpsI | GAGTC | 7 cut(s) | 164, 273, 877, 1194, 2194, 2431, 2553 |
| PpuMI | RGGWCCY | 2 cut(s) | 599, 973 |
| PscI | ACATGT | 2 cut(s) | 487, 1238 |
| PshAI | GACNNNNGTC | 1 cut(s) | 264 |
| PsiI | TTATAA | 2 cut(s) | 215, 1943 |
| Psp1406I | AACGTT | 2 cut(s) | 352, 2589 |
| Psp5II | RGGWCCY | 2 cut(s) | 599, 973 |
| PspFI | CCCAGC | 1 cut(s) | 2448 |
| PspN4I | GGNNCC | 2 cut(s) | 2808, 2871 |
| PspPI | GGNCC | 6 cut(s) | 314, 599, 973, 2008, 2806, 2927 |
| PspPPI | RGGWCCY | 2 cut(s) | 599, 973 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 912, 944 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2956 |
| PsuI | RGATCY | 2 cut(s) | 110, 2221 |
| RsaI | GTAC | 2 cut(s) | 949, 1261 |
| RsaNI | GTAC | 2 cut(s) | 948, 1260 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1204, 2461 |
| SacII | CCGCGG | 1 cut(s) | 2751 |
| SalI | GTCGAC | 1 cut(s) | 2635 |
| SapI | GCTCTTC | 1 cut(s) | 2682 |
| SatI | GCNGC | 6 cut(s) | 895, 2260, 2670, 2743, 2796, 2972 |
| Sau3AI | GATC | 8 cut(s) | 110, 196, 249, 406, 811, 983, 2221, 2941 |
| Sau96I | GGNCC | 6 cut(s) | 314, 599, 973, 2008, 2806, 2927 |
| SchI | GAGTC | 7 cut(s) | 164, 274, 878, 1195, 2195, 2431, 2553 |
| ScrFI | CCNGG | 3 cut(s) | 317, 318, 885 |
| SfaNI | GCATC | 7 cut(s) | 631, 813, 1978, 2071, 2081, 2393, 2807 |
| SfcI | CTRYAG | 1 cut(s) | 1857 |
| Sfr303I | CCGCGG | 1 cut(s) | 2751 |
| SgrBI | CCGCGG | 1 cut(s) | 2751 |
| SinI | GGWCC | 4 cut(s) | 599, 973, 2008, 2806 |
| SmaI | CCCGGG | 1 cut(s) | 318 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1204, 2461 |
| SmlI | CTYRAG | 7 cut(s) | 1285, 1354, 1423, 1561, 1630, 1927, 2140 |
| SmoI | CTYRAG | 7 cut(s) | 1285, 1354, 1423, 1561, 1630, 1927, 2140 |
| SpeI | ACTAGT | 2 cut(s) | 86, 2314 |
| SphI | GCATGC | 1 cut(s) | 440 |
| SseBI | AGGCCT | 2 cut(s) | 510, 788 |
| SsiI | CCGC | 9 cut(s) | 465, 1809, 2530, 2582, 2669, 2743, 2748, 2750, 2796 |
| SspI | AATATT | 2 cut(s) | 2050, 2216 |
| SspMI | CTAG | 7 cut(s) | 87, 128, 273, 647, 728, 2315, 2381 |
| StuI | AGGCCT | 2 cut(s) | 510, 788 |
| StyD4I | CCNGG | 3 cut(s) | 315, 316, 883 |
| StyI | CCWWGG | 1 cut(s) | 505 |
| TaaI | ACNGT | 3 cut(s) | 2021, 2256, 2286 |
| TaiI | ACGT | 5 cut(s) | 264, 355, 930, 1219, 2592 |
| TaqI | TCGA | 5 cut(s) | 1107, 1774, 2352, 2636, 2801 |
| TatI | WGTACW | 1 cut(s) | 1259 |
| TauI | GCSGC | 3 cut(s) | 2672, 2745, 2798 |
| TscAI | CASTG | 3 cut(s) | 196, 2170, 2957 |
| TseFI | GTSAC | 3 cut(s) | 870, 1187, 2165 |
| TseI | GCWGC | 3 cut(s) | 894, 2259, 2971 |
| Tsp45I | GTSAC | 3 cut(s) | 870, 1187, 2165 |
| TspDTI | ATGAA | 9 cut(s) | 384, 393, 468, 894, 1040, 1259, 1752, 2070, 2783 |
| TspGWI | ACGGA | 2 cut(s) | 1424, 1962 |
| TspMI | CCCGGG | 1 cut(s) | 316 |
| TspRI | CASTG | 3 cut(s) | 196, 2170, 2957 |
| VpaK11BI | GGWCC | 4 cut(s) | 599, 973, 2008, 2806 |
| XceI | RCATGY | 4 cut(s) | 440, 491, 707, 1242 |
| XmaI | CCCGGG | 1 cut(s) | 316 |
| XmiI | GTMKAC | 2 cut(s) | 921, 2636 |
| XmnI | GAANNNNTTC | 1 cut(s) | 669 |
| XspI | CTAG | 7 cut(s) | 87, 128, 273, 647, 728, 2315, 2381 |
| Zsp2I | ATGCAT | 2 cut(s) | 442, 828 |