TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 30 - 192 | 9e-55 | TIR domain |
| TIR_2 | PF13676 | 32 - 129 | 5.7e-16 | TIR domain |
| NB-ARC | PF00931 | 215 - 278 | 4.2e-09 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 336 - 418 | 5.9e-09 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_4 | PF12799 | 491 - 534 | 1.3e-07 | Leucine Rich repeats (2 copies) |
| LRR_4 | PF12799 | 537 - 580 | 1.3e-06 | Leucine Rich repeats (2 copies) |
| LRR_4 | PF12799 | 560 - 603 | 1.2e-06 | Leucine Rich repeats (2 copies) |
| LRR_13 | PF23286 | 696 - 779 | 3.8e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 717 - 796 | 2.2e-08 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 768 - 850 | 5.7e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 791 - 863 | 5e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 847 - 970 | 1.1e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 862 - 921 | 5.4e-06 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 820 |
| AatII | GACGTC | 1 cut(s) | 645 |
| Acc36I | ACCTGC | 1 cut(s) | 3168 |
| AccB1I | GGYRCC | 1 cut(s) | 404 |
| AccI | GTMKAC | 4 cut(s) | 149, 634, 1053, 1302 |
| AccII | CGCG | 1 cut(s) | 3032 |
| AciI | CCGC | 4 cut(s) | 776, 3030, 3032, 3120 |
| AclWI | GGATC | 4 cut(s) | 428, 938, 2463, 2676 |
| AcuI | CTGAAG | 2 cut(s) | 166, 2537 |
| AcyI | GRCGYC | 1 cut(s) | 642 |
| AfaI | GTAC | 8 cut(s) | 390, 1366, 1642, 1711, 1780, 1849, 1978, 2341 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 294, 529, 1126, 2217, 3126, 3200 |
| AflIII | ACRYGT | 1 cut(s) | 1343 |
| AgeI | ACCGGT | 1 cut(s) | 358 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 350, 641 |
| AjiI | CACGTC | 1 cut(s) | 967 |
| AjnI | CCWGG | 2 cut(s) | 694, 1840 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 600, 632, 2421, 2453, 2634, 2666 |
| Alw21I | GWGCWC | 2 cut(s) | 228, 972 |
| Alw26I | GTCTC | 8 cut(s) | 170, 806, 828, 957, 1145, 1157, 1449, 2371 |
| AlwI | GGATC | 4 cut(s) | 428, 938, 2463, 2676 |
| Ama87I | CYCGRG | 1 cut(s) | 1265 |
| AoxI | GGCC | 4 cut(s) | 520, 692, 850, 2733 |
| ApaI | GGGCCC | 1 cut(s) | 2737 |
| ApeKI | GCWGC | 6 cut(s) | 26, 377, 473, 488, 2493, 2706 |
| AseI | ATTAAT | 1 cut(s) | 1350 |
| AsiGI | ACCGGT | 1 cut(s) | 358 |
| AspS9I | GGNCC | 7 cut(s) | 520, 692, 850, 2242, 2733, 2734, 3142 |
| AsuC2I | CCSGG | 3 cut(s) | 1266, 1267, 3124 |
| AsuHPI | GGTGA | 5 cut(s) | 62, 425, 1245, 3019, 3036 |
| AvaI | CYCGRG | 1 cut(s) | 1265 |
| AvaII | GGWCC | 2 cut(s) | 2242, 3142 |
| BaeGI | GKGCMC | 2 cut(s) | 2737, 3172 |
| BanI | GGYRCC | 1 cut(s) | 404 |
| BanII | GRGCYC | 2 cut(s) | 228, 2737 |
| BauI | CACGAG | 1 cut(s) | 527 |
| BbsI | GAAGAC | 5 cut(s) | 88, 216, 259, 2525, 2994 |
| Bbv12I | GWGCWC | 2 cut(s) | 228, 972 |
| BbvI | GCAGC | 6 cut(s) | 38, 364, 485, 500, 2505, 2718 |
| BccI | CCATC | 9 cut(s) | 498, 1172, 2146, 2359, 2572, 2795, 3049, 3133, 3180 |
| BceAI | ACGGC | 2 cut(s) | 392, 2944 |
| BciT130I | CCWGG | 2 cut(s) | 696, 1842 |
| BciVI | GTATCC | 2 cut(s) | 112, 1930 |
| BcnI | CCSGG | 3 cut(s) | 1266, 1267, 3124 |
| BcoDI | GTCTC | 8 cut(s) | 170, 806, 828, 957, 1145, 1157, 1449, 2371 |
| BfaI | CTAG | 1 cut(s) | 1073 |
| BfmI | CTRYAG | 2 cut(s) | 328, 2091 |
| BfuAI | ACCTGC | 1 cut(s) | 3168 |
| BfuI | GTATCC | 2 cut(s) | 112, 1930 |
| BisI | GCNGC | 7 cut(s) | 27, 378, 474, 489, 2494, 2707, 3120 |
| BlpI | GCTNAGC | 1 cut(s) | 197 |
| BlsI | GCNGC | 7 cut(s) | 28, 379, 475, 490, 2495, 2708, 3121 |
| Bme1390I | CCNGG | 5 cut(s) | 696, 1266, 1267, 1842, 3124 |
| Bme18I | GGWCC | 2 cut(s) | 2242, 3142 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 350, 641 |
| BmeT110I | CYCGRG | 1 cut(s) | 1265 |
| BmgBI | CACGTC | 1 cut(s) | 967 |
| BmgT120I | GGNCC | 7 cut(s) | 520, 692, 850, 2242, 2733, 2734, 3142 |
| BmiI | GGNNCC | 7 cut(s) | 406, 693, 1995, 2735, 3081, 3144, 3205 |
| BmrFI | CCNGG | 5 cut(s) | 696, 1266, 1267, 1842, 3124 |
| BmrI | ACTGGG | 1 cut(s) | 2345 |
| BmsI | GCATC | 6 cut(s) | 649, 976, 1194, 2212, 2528, 3143 |
| BmuI | ACTGGG | 1 cut(s) | 2345 |
| BpiI | GAAGAC | 5 cut(s) | 88, 216, 259, 2525, 2994 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 954, 986, 2904, 2936 |
| Bpu10I | CCTNAGC | 1 cut(s) | 622 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 197 |
| BpuMI | CCSGG | 3 cut(s) | 1266, 1267, 3124 |
| Bsa29I | ATCGAT | 1 cut(s) | 3137 |
| BsaAI | YACGTR | 4 cut(s) | 1634, 1703, 1772, 2831 |
| BsaHI | GRCGYC | 1 cut(s) | 642 |
| BsaI | GGTCTC | 1 cut(s) | 170 |
| BsaJI | CCNNGG | 3 cut(s) | 1265, 3030, 3123 |
| BsaWI | WCCGGW | 1 cut(s) | 358 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 210, 240 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 294, 529, 1126, 2217, 3126, 3200 |
| Bse118I | RCCGGY | 3 cut(s) | 358, 522, 3046 |
| Bse1I | ACTGG | 5 cut(s) | 30, 70, 315, 2340, 2357 |
| Bse3DI | GCAATG | 1 cut(s) | 2044 |
| BseBI | CCWGG | 2 cut(s) | 696, 1842 |
| BseCI | ATCGAT | 1 cut(s) | 3137 |
| BseDI | CCNNGG | 3 cut(s) | 1265, 3030, 3123 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 294, 529, 1126, 2217, 3126, 3200 |
| BseMI | GCAATG | 1 cut(s) | 2044 |
| BseMII | CTCAG | 4 cut(s) | 92, 396, 1605, 3042 |
| BseNI | ACTGG | 5 cut(s) | 30, 70, 315, 2340, 2357 |
| BseRI | GAGGAG | 5 cut(s) | 218, 219, 257, 920, 2925 |
| BseSI | GKGCMC | 2 cut(s) | 2737, 3172 |
| BseXI | GCAGC | 6 cut(s) | 38, 364, 485, 500, 2505, 2718 |
| BseYI | CCCAGC | 2 cut(s) | 2895, 2943 |
| BsgI | GTGCAG | 4 cut(s) | 2512, 2725, 2872, 3146 |
| Bsh1236I | CGCG | 1 cut(s) | 3032 |
| BshFI | GGCC | 4 cut(s) | 522, 694, 852, 2735 |
| BshNI | GGYRCC | 1 cut(s) | 404 |
| BshTI | ACCGGT | 1 cut(s) | 358 |
| BshVI | ATCGAT | 1 cut(s) | 3137 |
| BsiHKAI | GWGCWC | 2 cut(s) | 228, 972 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1265 |
| BsiSI | CCGG | 6 cut(s) | 359, 523, 1266, 3047, 3061, 3123 |
| BslFI | GGGAC | 2 cut(s) | 2960, 3128 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 294, 529, 1126, 2217, 3126, 3200 |
| BsmAI | GTCTC | 8 cut(s) | 170, 806, 828, 957, 1145, 1157, 1449, 2371 |
| BsmBI | CGTCTC | 1 cut(s) | 957 |
| BsmFI | GGGAC | 2 cut(s) | 2960, 3128 |
| BsmI | GAATGC | 2 cut(s) | 2330, 2756 |
| BsnI | GGCC | 4 cut(s) | 522, 694, 852, 2735 |
| Bso31I | GGTCTC | 1 cut(s) | 170 |
| BsoBI | CYCGRG | 1 cut(s) | 1265 |
| Bsp120I | GGGCCC | 1 cut(s) | 2733 |
| Bsp1286I | GDGCHC | 4 cut(s) | 228, 972, 2737, 3172 |
| Bsp1407I | TGTACA | 5 cut(s) | 1364, 1640, 1709, 1778, 1847 |
| Bsp143I | GATC | 6 cut(s) | 139, 433, 785, 943, 2455, 2668 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 197 |
| BspACI | CCGC | 4 cut(s) | 776, 3030, 3032, 3120 |
| BspANI | GGCC | 4 cut(s) | 522, 694, 852, 2735 |
| BspCNI | CTCAG | 4 cut(s) | 93, 395, 1604, 3043 |
| BspDI | ATCGAT | 1 cut(s) | 3137 |
| BspFNI | CGCG | 1 cut(s) | 3032 |
| BspLI | GGNNCC | 7 cut(s) | 406, 693, 1995, 2735, 3081, 3144, 3205 |
| BspMAI | CTGCAG | 1 cut(s) | 332 |
| BspMI | ACCTGC | 1 cut(s) | 3168 |
| BspPI | GGATC | 4 cut(s) | 428, 938, 2463, 2676 |
| BspT107I | GGYRCC | 1 cut(s) | 404 |
| BspTNI | GGTCTC | 1 cut(s) | 170 |
| BsrDI | GCAATG | 1 cut(s) | 2044 |
| BsrFI | RCCGGY | 3 cut(s) | 358, 522, 3046 |
| BsrGI | TGTACA | 5 cut(s) | 1364, 1640, 1709, 1778, 1847 |
| BsrI | ACTGG | 5 cut(s) | 30, 70, 315, 2340, 2357 |
| BssAI | RCCGGY | 3 cut(s) | 358, 522, 3046 |
| BssECI | CCNNGG | 3 cut(s) | 1265, 3030, 3123 |
| BssMI | GATC | 6 cut(s) | 139, 433, 785, 943, 2455, 2668 |
| BssNAI | GTATAC | 1 cut(s) | 150 |
| BssNI | GRCGYC | 1 cut(s) | 642 |
| BssSI | CACGAG | 1 cut(s) | 527 |
| Bst1107I | GTATAC | 1 cut(s) | 150 |
| Bst2BI | CACGAG | 1 cut(s) | 527 |
| Bst2UI | CCWGG | 2 cut(s) | 696, 1842 |
| Bst4CI | ACNGT | 3 cut(s) | 2255, 2490, 3167 |
| Bst6I | CTCTTC | 3 cut(s) | 2142, 2703, 3193 |
| BstACI | GRCGYC | 1 cut(s) | 642 |
| BstAUI | TGTACA | 5 cut(s) | 1364, 1640, 1709, 1778, 1847 |
| BstBAI | YACGTR | 4 cut(s) | 1634, 1703, 1772, 2831 |
| BstC8I | GCNNGC | 5 cut(s) | 524, 567, 1081, 2120, 3132 |
| BstDEI | CTNAG | 8 cut(s) | 101, 197, 301, 382, 622, 1591, 2603, 3051 |
| BstDSI | CCRYGG | 1 cut(s) | 3030 |
| BstEII | GGTNACC | 1 cut(s) | 68 |
| BstFNI | CGCG | 1 cut(s) | 3032 |
| BstKTI | GATC | 6 cut(s) | 142, 436, 788, 946, 2458, 2671 |
| BstMAI | GTCTC | 8 cut(s) | 170, 806, 828, 957, 1145, 1157, 1449, 2371 |
| BstMBI | GATC | 6 cut(s) | 139, 433, 785, 943, 2455, 2668 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 2227, 2315 |
| BstNI | CCWGG | 2 cut(s) | 696, 1842 |
| BstNSI | RCATGY | 2 cut(s) | 1052, 1347 |
| BstPI | GGTNACC | 1 cut(s) | 68 |
| BstSCI | CCNGG | 5 cut(s) | 694, 1264, 1265, 1840, 3122 |
| BstSFI | CTRYAG | 2 cut(s) | 328, 2091 |
| BstSLI | GKGCMC | 2 cut(s) | 2737, 3172 |
| BstUI | CGCG | 1 cut(s) | 3032 |
| BstV1I | GCAGC | 6 cut(s) | 38, 364, 485, 500, 2505, 2718 |
| BstV2I | GAAGAC | 5 cut(s) | 88, 216, 259, 2525, 2994 |
| BstX2I | RGATCY | 3 cut(s) | 943, 2455, 2668 |
| BstYI | RGATCY | 3 cut(s) | 943, 2455, 2668 |
| BstZ17I | GTATAC | 1 cut(s) | 150 |
| Bsu15I | ATCGAT | 1 cut(s) | 3137 |
| BsuI | GTATCC | 2 cut(s) | 112, 1930 |
| BsuRI | GGCC | 4 cut(s) | 522, 694, 852, 2735 |
| BsuTUI | ATCGAT | 1 cut(s) | 3137 |
| BtgI | CCRYGG | 1 cut(s) | 3030 |
| BtrI | CACGTC | 1 cut(s) | 967 |
| BtsI | GCAGTG | 2 cut(s) | 2404, 2617 |
| BtsIMutI | CAGTG | 3 cut(s) | 2404, 2617, 3172 |
| BveI | ACCTGC | 1 cut(s) | 3168 |
| Cac8I | GCNNGC | 5 cut(s) | 524, 567, 1081, 2120, 3132 |
| Cfr10I | RCCGGY | 3 cut(s) | 358, 522, 3046 |
| Cfr13I | GGNCC | 7 cut(s) | 520, 692, 850, 2242, 2733, 2734, 3142 |
| Cfr42I | CCGCGG | 1 cut(s) | 3033 |
| Cfr9I | CCCGGG | 1 cut(s) | 1265 |
| ClaI | ATCGAT | 1 cut(s) | 3137 |
| CseI | GACGC | 1 cut(s) | 425 |
| Csp6I | GTAC | 8 cut(s) | 389, 1365, 1641, 1710, 1779, 1848, 1977, 2340 |
| CspAI | ACCGGT | 1 cut(s) | 358 |
| CviAII | CATG | 9 cut(s) | 438, 457, 588, 676, 1049, 1208, 1344, 2988, 3148 |
| CviQI | GTAC | 8 cut(s) | 389, 1365, 1641, 1710, 1779, 1848, 1977, 2340 |
| DdeI | CTNAG | 8 cut(s) | 101, 197, 301, 382, 622, 1591, 2603, 3051 |
| DpnI | GATC | 6 cut(s) | 141, 435, 787, 945, 2457, 2670 |
| DpnII | GATC | 6 cut(s) | 139, 433, 785, 943, 2455, 2668 |
| DraI | TTTAAA | 1 cut(s) | 1005 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 820 |
| DriI | GACNNNNNGTC | 2 cut(s) | 350, 641 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 820 |
| Eam1104I | CTCTTC | 3 cut(s) | 2142, 2703, 3193 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 350, 641 |
| EarI | CTCTTC | 3 cut(s) | 2142, 2703, 3193 |
| EciI | GGCGGA | 1 cut(s) | 791 |
| Ecl136II | GAGCTC | 1 cut(s) | 226 |
| Eco24I | GRGCYC | 2 cut(s) | 228, 2737 |
| Eco31I | GGTCTC | 1 cut(s) | 170 |
| Eco32I | GATATC | 1 cut(s) | 1024 |
| Eco47I | GGWCC | 2 cut(s) | 2242, 3142 |
| Eco53kI | GAGCTC | 1 cut(s) | 226 |
| Eco57I | CTGAAG | 2 cut(s) | 166, 2537 |
| Eco88I | CYCGRG | 1 cut(s) | 1265 |
| Eco91I | GGTNACC | 1 cut(s) | 68 |
| EcoICRI | GAGCTC | 1 cut(s) | 226 |
| EcoO109I | RGGNCCY | 3 cut(s) | 850, 2733, 2734 |
| EcoO65I | GGTNACC | 1 cut(s) | 68 |
| EcoRI | GAATTC | 1 cut(s) | 3094 |
| EcoRII | CCWGG | 2 cut(s) | 694, 1840 |
| EcoRV | GATATC | 1 cut(s) | 1024 |
| EcoT22I | ATGCAT | 1 cut(s) | 1209 |
| EcoT38I | GRGCYC | 2 cut(s) | 228, 2737 |
| Esp3I | CGTCTC | 1 cut(s) | 957 |
| FaeI | CATG | 9 cut(s) | 441, 460, 591, 679, 1052, 1211, 1347, 2991, 3151 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 801, 833 |
| FaqI | GGGAC | 2 cut(s) | 2960, 3128 |
| FatI | CATG | 9 cut(s) | 437, 456, 587, 675, 1048, 1207, 1343, 2987, 3147 |
| FauNDI | CATATG | 1 cut(s) | 686 |
| FblI | GTMKAC | 4 cut(s) | 149, 634, 1053, 1302 |
| Fnu4HI | GCNGC | 7 cut(s) | 27, 378, 474, 489, 2494, 2707, 3120 |
| FriOI | GRGCYC | 2 cut(s) | 228, 2737 |
| Fsp4HI | GCNGC | 7 cut(s) | 27, 378, 474, 489, 2494, 2707, 3120 |
| FspBI | CTAG | 1 cut(s) | 1073 |
| GluI | GCNGC | 7 cut(s) | 27, 378, 474, 489, 2494, 2707, 3120 |
| GsaI | CCCAGC | 2 cut(s) | 2899, 2947 |
| HaeIII | GGCC | 4 cut(s) | 522, 694, 852, 2735 |
| HapII | CCGG | 6 cut(s) | 359, 523, 1266, 3047, 3061, 3123 |
| HgaI | GACGC | 1 cut(s) | 425 |
| Hin1I | GRCGYC | 1 cut(s) | 642 |
| Hin1II | CATG | 9 cut(s) | 441, 460, 591, 679, 1052, 1211, 1347, 2991, 3151 |
| HincII | GTYRAC | 2 cut(s) | 646, 2041 |
| HindII | GTYRAC | 2 cut(s) | 646, 2041 |
| HindIII | AAGCTT | 3 cut(s) | 194, 1077, 2120 |
| HpaII | CCGG | 6 cut(s) | 359, 523, 1266, 3047, 3061, 3123 |
| HphI | GGTGA | 5 cut(s) | 62, 425, 1245, 3019, 3036 |
| Hpy166II | GTNNAC | 6 cut(s) | 150, 635, 646, 1054, 1303, 2041 |
| Hpy8I | GTNNAC | 6 cut(s) | 150, 635, 646, 1054, 1303, 2041 |
| Hpy99I | CGWCG | 3 cut(s) | 266, 413, 2986 |
| HpyAV | CCTTC | 9 cut(s) | 190, 463, 594, 752, 841, 863, 891, 2024, 2282 |
| HpyCH4III | ACNGT | 3 cut(s) | 2255, 2490, 3167 |
| HpyCH4IV | ACGT | 8 cut(s) | 600, 642, 966, 1308, 1633, 1702, 1771, 2830 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 2227, 2315 |
| HpyF3I | CTNAG | 8 cut(s) | 101, 197, 301, 382, 622, 1591, 2603, 3051 |
| HpySE526I | ACGT | 8 cut(s) | 600, 642, 966, 1308, 1633, 1702, 1771, 2830 |
| Hsp92I | GRCGYC | 1 cut(s) | 642 |
| Hsp92II | CATG | 9 cut(s) | 441, 460, 591, 679, 1052, 1211, 1347, 2991, 3151 |
| KroI | GCCGGC | 1 cut(s) | 522 |
| KroNI | GCCGGC | 1 cut(s) | 524 |
| KspI | CCGCGG | 1 cut(s) | 3033 |
| Kzo9I | GATC | 6 cut(s) | 139, 433, 785, 943, 2455, 2668 |
| LmnI | GCTCC | 2 cut(s) | 231, 2940 |
| Lsp1109I | GCAGC | 6 cut(s) | 38, 364, 485, 500, 2505, 2718 |
| LweI | GCATC | 6 cut(s) | 649, 976, 1194, 2212, 2528, 3143 |
| MaeI | CTAG | 1 cut(s) | 1073 |
| MaeII | ACGT | 8 cut(s) | 600, 642, 966, 1308, 1633, 1702, 1771, 2830 |
| MaeIII | GTNAC | 5 cut(s) | 68, 413, 1251, 2399, 2612 |
| MalI | GATC | 6 cut(s) | 141, 435, 787, 945, 2457, 2670 |
| MboI | GATC | 6 cut(s) | 139, 433, 785, 943, 2455, 2668 |
| MfeI | CAATTG | 5 cut(s) | 237, 615, 717, 2424, 2637 |
| MflI | RGATCY | 3 cut(s) | 943, 2455, 2668 |
| MhlI | GDGCHC | 4 cut(s) | 228, 972, 2737, 3172 |
| MlyI | GAGTC | 6 cut(s) | 254, 1259, 2429, 2515, 2642, 2878 |
| MmeI | TCCRAC | 4 cut(s) | 1536, 2220, 2433, 2798 |
| Mph1103I | ATGCAT | 1 cut(s) | 1209 |
| MroNI | GCCGGC | 1 cut(s) | 522 |
| MspA1I | CMGCKG | 1 cut(s) | 3032 |
| MspI | CCGG | 6 cut(s) | 359, 523, 1266, 3047, 3061, 3123 |
| MspR9I | CCNGG | 5 cut(s) | 696, 1266, 1267, 1842, 3124 |
| MunI | CAATTG | 5 cut(s) | 237, 615, 717, 2424, 2637 |
| Mva1269I | GAATGC | 2 cut(s) | 2330, 2756 |
| MvaI | CCWGG | 2 cut(s) | 696, 1842 |
| MvnI | CGCG | 1 cut(s) | 3032 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 2227, 2315 |
| NaeI | GCCGGC | 1 cut(s) | 524 |
| NciI | CCSGG | 3 cut(s) | 1266, 1267, 3124 |
| NdeI | CATATG | 1 cut(s) | 686 |
| NdeII | GATC | 6 cut(s) | 139, 433, 785, 943, 2455, 2668 |
| NgoMIV | GCCGGC | 1 cut(s) | 522 |
| NlaIII | CATG | 9 cut(s) | 441, 460, 591, 679, 1052, 1211, 1347, 2991, 3151 |
| NlaIV | GGNNCC | 7 cut(s) | 406, 693, 1995, 2735, 3081, 3144, 3205 |
| NmuCI | GTSAC | 5 cut(s) | 68, 413, 1251, 2399, 2612 |
| NsiI | ATGCAT | 1 cut(s) | 1209 |
| NspI | RCATGY | 2 cut(s) | 1052, 1347 |
| PciI | ACATGT | 1 cut(s) | 1343 |
| PctI | GAATGC | 2 cut(s) | 2330, 2756 |
| PdiI | GCCGGC | 1 cut(s) | 524 |
| PinAI | ACCGGT | 1 cut(s) | 358 |
| PkrI | GCNGC | 7 cut(s) | 28, 379, 475, 490, 2495, 2708, 3121 |
| PleI | GAGTC | 6 cut(s) | 253, 1258, 2428, 2515, 2641, 2878 |
| PpsI | GAGTC | 6 cut(s) | 253, 1258, 2428, 2515, 2641, 2878 |
| Ppu21I | YACGTR | 4 cut(s) | 1634, 1703, 1772, 2831 |
| PscI | ACATGT | 1 cut(s) | 1343 |
| PshBI | ATTAAT | 1 cut(s) | 1350 |
| Psp124BI | GAGCTC | 1 cut(s) | 228 |
| Psp6I | CCWGG | 2 cut(s) | 694, 1840 |
| PspEI | GGTNACC | 1 cut(s) | 68 |
| PspFI | CCCAGC | 2 cut(s) | 2895, 2943 |
| PspGI | CCWGG | 2 cut(s) | 694, 1840 |
| PspN4I | GGNNCC | 7 cut(s) | 406, 693, 1995, 2735, 3081, 3144, 3205 |
| PspOMI | GGGCCC | 1 cut(s) | 2733 |
| PspPI | GGNCC | 7 cut(s) | 520, 692, 850, 2242, 2733, 2734, 3142 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1293, 1325 |
| PstI | CTGCAG | 1 cut(s) | 332 |
| PsuI | RGATCY | 3 cut(s) | 943, 2455, 2668 |
| RsaI | GTAC | 8 cut(s) | 390, 1366, 1642, 1711, 1780, 1849, 1978, 2341 |
| RsaNI | GTAC | 8 cut(s) | 389, 1365, 1641, 1710, 1779, 1848, 1977, 2340 |
| SacI | GAGCTC | 1 cut(s) | 228 |
| SacII | CCGCGG | 1 cut(s) | 3033 |
| SatI | GCNGC | 7 cut(s) | 27, 378, 474, 489, 2494, 2707, 3120 |
| Sau3AI | GATC | 6 cut(s) | 139, 433, 785, 943, 2455, 2668 |
| Sau96I | GGNCC | 7 cut(s) | 520, 692, 850, 2242, 2733, 2734, 3142 |
| SchI | GAGTC | 6 cut(s) | 254, 1259, 2429, 2515, 2642, 2878 |
| ScrFI | CCNGG | 5 cut(s) | 696, 1266, 1267, 1842, 3124 |
| SduI | GDGCHC | 4 cut(s) | 228, 972, 2737, 3172 |
| SfaNI | GCATC | 6 cut(s) | 649, 976, 1194, 2212, 2528, 3143 |
| SfcI | CTRYAG | 2 cut(s) | 328, 2091 |
| Sfr303I | CCGCGG | 1 cut(s) | 3033 |
| SgrBI | CCGCGG | 1 cut(s) | 3033 |
| SinI | GGWCC | 2 cut(s) | 2242, 3142 |
| SmaI | CCCGGG | 1 cut(s) | 1267 |
| SsiI | CCGC | 4 cut(s) | 776, 3030, 3032, 3120 |
| SspI | AATATT | 1 cut(s) | 2284 |
| SspMI | CTAG | 1 cut(s) | 1073 |
| SstI | GAGCTC | 1 cut(s) | 228 |
| StyD4I | CCNGG | 5 cut(s) | 694, 1264, 1265, 1840, 3122 |
| TaaI | ACNGT | 3 cut(s) | 2255, 2490, 3167 |
| TaiI | ACGT | 8 cut(s) | 603, 645, 969, 1311, 1636, 1705, 1774, 2833 |
| TaqI | TCGA | 3 cut(s) | 109, 2922, 3137 |
| TatI | WGTACW | 6 cut(s) | 1364, 1640, 1709, 1778, 1847, 1976 |
| TauI | GCSGC | 1 cut(s) | 3122 |
| TscAI | CASTG | 3 cut(s) | 2404, 2617, 3172 |
| TseFI | GTSAC | 5 cut(s) | 68, 413, 1251, 2399, 2612 |
| TseI | GCWGC | 6 cut(s) | 26, 377, 473, 488, 2493, 2706 |
| Tsp45I | GTSAC | 5 cut(s) | 68, 413, 1251, 2399, 2612 |
| TspDTI | ATGAA | 9 cut(s) | 27, 321, 576, 1115, 1275, 1986, 2006, 2574, 3107 |
| TspGWI | ACGGA | 6 cut(s) | 1498, 2196, 2265, 2691, 2970, 3092 |
| TspMI | CCCGGG | 1 cut(s) | 1265 |
| TspRI | CASTG | 3 cut(s) | 2404, 2617, 3172 |
| VpaK11BI | GGWCC | 2 cut(s) | 2242, 3142 |
| VspI | ATTAAT | 1 cut(s) | 1350 |
| XceI | RCATGY | 2 cut(s) | 1052, 1347 |
| XmaI | CCCGGG | 1 cut(s) | 1265 |
| XmiI | GTMKAC | 4 cut(s) | 149, 634, 1053, 1302 |
| XspI | CTAG | 1 cut(s) | 1073 |
| ZraI | GACGTC | 1 cut(s) | 643 |
| Zsp2I | ATGCAT | 1 cut(s) | 1209 |