TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRR_14 | PF23598 | 131 - 213 | 1.1e-07 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 204 - 284 | 2.1e-14 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 232 - 289 | 9.5e-07 | Leucine rich repeat |
| LRR_14 | PF23598 | 252 - 304 | 4.9e-07 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 296 - 352 | 7.4e-10 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 348 - 425 | 1e-09 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 469 - 565 | 1.5e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1278 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1741 |
| AccI | GTMKAC | 2 cut(s) | 1902, 2139 |
| AccII | CGCG | 1 cut(s) | 989 |
| AccIII | TCCGGA | 1 cut(s) | 32 |
| AciI | CCGC | 3 cut(s) | 166, 1114, 1226 |
| AclI | AACGTT | 1 cut(s) | 283 |
| AclWI | GGATC | 3 cut(s) | 2073, 2193, 2280 |
| AcsI | RAATTY | 7 cut(s) | 307, 564, 651, 1544, 1666, 1929, 1951 |
| AcuI | CTGAAG | 1 cut(s) | 1535 |
| AcyI | GRCGYC | 1 cut(s) | 1812 |
| AfaI | GTAC | 3 cut(s) | 686, 1704, 1835 |
| AfeI | AGCGCT | 1 cut(s) | 1315 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 332, 1288, 1741, 1821, 1868, 2391 |
| AflIII | ACRYGT | 5 cut(s) | 711, 849, 987, 2142, 2153 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1477, 1768 |
| AhlI | ACTAGT | 1 cut(s) | 1907 |
| AjiI | CACGTC | 2 cut(s) | 712, 850 |
| AjnI | CCWGG | 2 cut(s) | 1387, 2253 |
| AleI | CACNNNNGTG | 1 cut(s) | 1910 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1857, 1889 |
| AluBI | AGCT | 9 cut(s) | 72, 427, 781, 919, 1057, 1255, 1411, 2173, 2357 |
| AluI | AGCT | 9 cut(s) | 72, 427, 781, 919, 1057, 1255, 1411, 2173, 2357 |
| Alw21I | GWGCWC | 1 cut(s) | 477 |
| Alw26I | GTCTC | 9 cut(s) | 256, 380, 968, 1004, 1453, 1486, 1529, 1587, 1862 |
| Alw44I | GTGCAC | 1 cut(s) | 473 |
| AlwI | GGATC | 3 cut(s) | 2073, 2193, 2280 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1414, 1451 |
| Ama87I | CYCGRG | 2 cut(s) | 452, 1861 |
| Aor13HI | TCCGGA | 1 cut(s) | 32 |
| Aor51HI | AGCGCT | 1 cut(s) | 1315 |
| AoxI | GGCC | 2 cut(s) | 89, 1177 |
| ApaLI | GTGCAC | 1 cut(s) | 473 |
| ApeKI | GCWGC | 2 cut(s) | 1246, 2354 |
| ApoI | RAATTY | 7 cut(s) | 307, 564, 651, 1544, 1666, 1929, 1951 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1431, 1463 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1341 |
| AspA2I | CCTAGG | 3 cut(s) | 158, 377, 1946 |
| AspLEI | GCGC | 1 cut(s) | 1316 |
| AspS9I | GGNCC | 2 cut(s) | 90, 2248 |
| AsuC2I | CCSGG | 3 cut(s) | 1862, 1863, 2392 |
| AsuHPI | GGTGA | 4 cut(s) | 1303, 1907, 1973, 2297 |
| AvaI | CYCGRG | 2 cut(s) | 452, 1861 |
| AvaII | GGWCC | 1 cut(s) | 2248 |
| AvrII | CCTAGG | 3 cut(s) | 158, 377, 1946 |
| BaeGI | GKGCMC | 2 cut(s) | 477, 1283 |
| BanI | GGYRCC | 1 cut(s) | 1278 |
| BauI | CACGAG | 1 cut(s) | 2298 |
| BbsI | GAAGAC | 1 cut(s) | 2295 |
| Bbv12I | GWGCWC | 1 cut(s) | 477 |
| BbvI | GCAGC | 2 cut(s) | 1233, 2366 |
| BccI | CCATC | 9 cut(s) | 124, 179, 475, 817, 1711, 1771, 1795, 2210, 2411 |
| BciT130I | CCWGG | 2 cut(s) | 1389, 2255 |
| BciVI | GTATCC | 1 cut(s) | 329 |
| BclI | TGATCA | 4 cut(s) | 1381, 2131, 2326, 2407 |
| BcnI | CCSGG | 3 cut(s) | 1862, 1863, 2392 |
| BcoDI | GTCTC | 9 cut(s) | 256, 380, 968, 1004, 1453, 1486, 1529, 1587, 1862 |
| BcuI | ACTAGT | 1 cut(s) | 1907 |
| BfaI | CTAG | 6 cut(s) | 159, 293, 378, 1265, 1908, 1947 |
| BfmI | CTRYAG | 1 cut(s) | 2174 |
| BfoI | RGCGCY | 1 cut(s) | 1317 |
| BfuI | GTATCC | 1 cut(s) | 329 |
| BisI | GCNGC | 4 cut(s) | 166, 1226, 1247, 2355 |
| BlnI | CCTAGG | 3 cut(s) | 158, 377, 1946 |
| BlsI | GCNGC | 4 cut(s) | 167, 1227, 1248, 2356 |
| BmcAI | AGTACT | 2 cut(s) | 1704, 1835 |
| Bme1390I | CCNGG | 5 cut(s) | 1389, 1862, 1863, 2255, 2392 |
| Bme18I | GGWCC | 1 cut(s) | 2248 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1477, 1768 |
| BmeT110I | CYCGRG | 2 cut(s) | 452, 1861 |
| BmgBI | CACGTC | 2 cut(s) | 712, 850 |
| BmgT120I | GGNCC | 2 cut(s) | 90, 2248 |
| BmiI | GGNNCC | 4 cut(s) | 164, 1280, 2249, 2454 |
| BmrFI | CCNGG | 5 cut(s) | 1389, 1862, 1863, 2255, 2392 |
| BmsI | GCATC | 9 cut(s) | 26, 177, 205, 331, 942, 1114, 1341, 1424, 1545 |
| BpiI | GAAGAC | 1 cut(s) | 2295 |
| BpmI | CTGGAG | 1 cut(s) | 1683 |
| BpuEI | CTTGAG | 2 cut(s) | 362, 404 |
| BpuMI | CCSGG | 3 cut(s) | 1862, 1863, 2392 |
| BsaAI | YACGTR | 1 cut(s) | 2143 |
| BsaBI | GATNNNNATC | 3 cut(s) | 808, 1940, 2409 |
| BsaHI | GRCGYC | 1 cut(s) | 1812 |
| BsaJI | CCNNGG | 8 cut(s) | 158, 377, 558, 834, 972, 1861, 1946, 2391 |
| BsaWI | WCCGGW | 1 cut(s) | 32 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 332, 1288, 1741, 1821, 1868, 2391 |
| Bse1I | ACTGG | 5 cut(s) | 1293, 1686, 1700, 1746, 1841 |
| Bse3DI | GCAATG | 1 cut(s) | 1109 |
| Bse8I | GATNNNNATC | 3 cut(s) | 808, 1940, 2409 |
| BseAI | TCCGGA | 1 cut(s) | 32 |
| BseBI | CCWGG | 2 cut(s) | 1389, 2255 |
| BseDI | CCNNGG | 8 cut(s) | 158, 377, 558, 834, 972, 1861, 1946, 2391 |
| BseJI | GATNNNNATC | 3 cut(s) | 808, 1940, 2409 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 332, 1288, 1741, 1821, 1868, 2391 |
| BseMI | GCAATG | 1 cut(s) | 1109 |
| BseMII | CTCAG | 2 cut(s) | 2109, 2226 |
| BseNI | ACTGG | 5 cut(s) | 1293, 1686, 1700, 1746, 1841 |
| BseSI | GKGCMC | 2 cut(s) | 477, 1283 |
| BseXI | GCAGC | 2 cut(s) | 1233, 2366 |
| BseYI | CCCAGC | 2 cut(s) | 1407, 1528 |
| BsgI | GTGCAG | 1 cut(s) | 1353 |
| Bsh1236I | CGCG | 1 cut(s) | 989 |
| BshFI | GGCC | 2 cut(s) | 91, 1179 |
| BshNI | GGYRCC | 1 cut(s) | 1278 |
| BsiHKAI | GWGCWC | 1 cut(s) | 477 |
| BsiHKCI | CYCGRG | 2 cut(s) | 452, 1861 |
| BsiSI | CCGG | 3 cut(s) | 33, 1862, 2391 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 332, 1288, 1741, 1821, 1868, 2391 |
| BsmAI | GTCTC | 9 cut(s) | 256, 380, 968, 1004, 1453, 1486, 1529, 1587, 1862 |
| BsmI | GAATGC | 1 cut(s) | 532 |
| BsnI | GGCC | 2 cut(s) | 91, 1179 |
| BsoBI | CYCGRG | 2 cut(s) | 452, 1861 |
| Bsp1286I | GDGCHC | 2 cut(s) | 477, 1283 |
| Bsp13I | TCCGGA | 1 cut(s) | 32 |
| Bsp143I | GATC | 9 cut(s) | 295, 1381, 2065, 2131, 2185, 2272, 2326, 2407, 2428 |
| BspACI | CCGC | 3 cut(s) | 166, 1114, 1226 |
| BspANI | GGCC | 2 cut(s) | 91, 1179 |
| BspCNI | CTCAG | 2 cut(s) | 2108, 2225 |
| BspEI | TCCGGA | 1 cut(s) | 32 |
| BspFNI | CGCG | 1 cut(s) | 989 |
| BspHI | TCATGA | 4 cut(s) | 1924, 2068, 2128, 2413 |
| BspLI | GGNNCC | 4 cut(s) | 164, 1280, 2249, 2454 |
| BspPI | GGATC | 3 cut(s) | 2073, 2193, 2280 |
| BspT107I | GGYRCC | 1 cut(s) | 1278 |
| BsrDI | GCAATG | 1 cut(s) | 1109 |
| BsrI | ACTGG | 5 cut(s) | 1293, 1686, 1700, 1746, 1841 |
| BssECI | CCNNGG | 8 cut(s) | 158, 377, 558, 834, 972, 1861, 1946, 2391 |
| BssMI | GATC | 9 cut(s) | 295, 1381, 2065, 2131, 2185, 2272, 2326, 2407, 2428 |
| BssNAI | GTATAC | 1 cut(s) | 2140 |
| BssNI | GRCGYC | 1 cut(s) | 1812 |
| BssSI | CACGAG | 1 cut(s) | 2298 |
| BssT1I | CCWWGG | 6 cut(s) | 158, 377, 558, 834, 972, 1946 |
| Bst1107I | GTATAC | 1 cut(s) | 2140 |
| Bst2BI | CACGAG | 1 cut(s) | 2298 |
| Bst2UI | CCWGG | 2 cut(s) | 1389, 2255 |
| Bst4CI | ACNGT | 7 cut(s) | 29, 98, 175, 1232, 1475, 2044, 2075 |
| Bst6I | CTCTTC | 1 cut(s) | 1347 |
| BstACI | GRCGYC | 1 cut(s) | 1812 |
| BstBAI | YACGTR | 1 cut(s) | 2143 |
| BstC8I | GCNNGC | 2 cut(s) | 1312, 1534 |
| BstDEI | CTNAG | 6 cut(s) | 11, 506, 924, 1589, 2095, 2212 |
| BstFNI | CGCG | 1 cut(s) | 989 |
| BstH2I | RGCGCY | 1 cut(s) | 1317 |
| BstHHI | GCGC | 1 cut(s) | 1316 |
| BstKTI | GATC | 9 cut(s) | 298, 1384, 2068, 2134, 2188, 2275, 2329, 2410, 2431 |
| BstMAI | GTCTC | 9 cut(s) | 256, 380, 968, 1004, 1453, 1486, 1529, 1587, 1862 |
| BstMBI | GATC | 9 cut(s) | 295, 1381, 2065, 2131, 2185, 2272, 2326, 2407, 2428 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1252 |
| BstNI | CCWGG | 2 cut(s) | 1389, 2255 |
| BstNSI | RCATGY | 2 cut(s) | 1536, 2157 |
| BstSCI | CCNGG | 5 cut(s) | 1387, 1860, 1861, 2253, 2390 |
| BstSFI | CTRYAG | 1 cut(s) | 2174 |
| BstSLI | GKGCMC | 2 cut(s) | 477, 1283 |
| BstUI | CGCG | 1 cut(s) | 989 |
| BstV1I | GCAGC | 2 cut(s) | 1233, 2366 |
| BstV2I | GAAGAC | 1 cut(s) | 2295 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1681 |
| BstZ17I | GTATAC | 1 cut(s) | 2140 |
| BsuI | GTATCC | 1 cut(s) | 329 |
| BsuRI | GGCC | 2 cut(s) | 91, 1179 |
| BtrI | CACGTC | 2 cut(s) | 712, 850 |
| BtsI | GCAGTG | 1 cut(s) | 2520 |
| BtsIMutI | CAGTG | 3 cut(s) | 1237, 2080, 2520 |
| Cac8I | GCNNGC | 2 cut(s) | 1312, 1534 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1414, 1451 |
| CciI | TCATGA | 4 cut(s) | 1924, 2068, 2128, 2413 |
| CfoI | GCGC | 1 cut(s) | 1316 |
| Cfr13I | GGNCC | 2 cut(s) | 90, 2248 |
| Cfr9I | CCCGGG | 1 cut(s) | 1861 |
| CseI | GACGC | 4 cut(s) | 978, 995, 1406, 1820 |
| Csp6I | GTAC | 3 cut(s) | 685, 1703, 1834 |
| CviQI | GTAC | 3 cut(s) | 685, 1703, 1834 |
| DdeI | CTNAG | 6 cut(s) | 11, 506, 924, 1589, 2095, 2212 |
| DpnI | GATC | 9 cut(s) | 297, 1383, 2067, 2133, 2187, 2274, 2328, 2409, 2430 |
| DpnII | GATC | 9 cut(s) | 295, 1381, 2065, 2131, 2185, 2272, 2326, 2407, 2428 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1477, 1768 |
| Eam1104I | CTCTTC | 1 cut(s) | 1347 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1477, 1768 |
| EarI | CTCTTC | 1 cut(s) | 1347 |
| Eco130I | CCWWGG | 6 cut(s) | 158, 377, 558, 834, 972, 1946 |
| Eco47I | GGWCC | 1 cut(s) | 2248 |
| Eco47III | AGCGCT | 1 cut(s) | 1315 |
| Eco57I | CTGAAG | 1 cut(s) | 1535 |
| Eco88I | CYCGRG | 2 cut(s) | 452, 1861 |
| EcoRI | GAATTC | 1 cut(s) | 651 |
| EcoRII | CCWGG | 2 cut(s) | 1387, 2253 |
| EcoT14I | CCWWGG | 6 cut(s) | 158, 377, 558, 834, 972, 1946 |
| EcoT22I | ATGCAT | 1 cut(s) | 1538 |
| ErhI | CCWWGG | 6 cut(s) | 158, 377, 558, 834, 972, 1946 |
| FauI | CCCGC | 1 cut(s) | 1107 |
| FbaI | TGATCA | 4 cut(s) | 1381, 2131, 2326, 2407 |
| FblI | GTMKAC | 2 cut(s) | 1902, 2139 |
| Fnu4HI | GCNGC | 4 cut(s) | 166, 1226, 1247, 2355 |
| Fsp4HI | GCNGC | 4 cut(s) | 166, 1226, 1247, 2355 |
| FspBI | CTAG | 6 cut(s) | 159, 293, 378, 1265, 1908, 1947 |
| GlaI | GCGC | 1 cut(s) | 1315 |
| GluI | GCNGC | 4 cut(s) | 166, 1226, 1247, 2355 |
| GsaI | CCCAGC | 2 cut(s) | 1411, 1532 |
| GsuI | CTGGAG | 1 cut(s) | 1683 |
| HaeII | RGCGCY | 1 cut(s) | 1317 |
| HaeIII | GGCC | 2 cut(s) | 91, 1179 |
| HapII | CCGG | 3 cut(s) | 33, 1862, 2391 |
| HgaI | GACGC | 4 cut(s) | 978, 995, 1406, 1820 |
| HhaI | GCGC | 1 cut(s) | 1316 |
| Hin1I | GRCGYC | 1 cut(s) | 1812 |
| Hin6I | GCGC | 1 cut(s) | 1314 |
| HinP1I | GCGC | 1 cut(s) | 1314 |
| HincII | GTYRAC | 1 cut(s) | 1903 |
| HindII | GTYRAC | 1 cut(s) | 1903 |
| HpaII | CCGG | 3 cut(s) | 33, 1862, 2391 |
| HphI | GGTGA | 4 cut(s) | 1303, 1907, 1973, 2297 |
| Hpy166II | GTNNAC | 6 cut(s) | 475, 1237, 1482, 1903, 2140, 2251 |
| Hpy8I | GTNNAC | 6 cut(s) | 475, 1237, 1482, 1903, 2140, 2251 |
| HpyCH4III | ACNGT | 7 cut(s) | 29, 98, 175, 1232, 1475, 2044, 2075 |
| HpyCH4IV | ACGT | 5 cut(s) | 283, 711, 849, 2142, 2343 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1252 |
| HpyF3I | CTNAG | 6 cut(s) | 11, 506, 924, 1589, 2095, 2212 |
| HpySE526I | ACGT | 5 cut(s) | 283, 711, 849, 2142, 2343 |
| Hsp92I | GRCGYC | 1 cut(s) | 1812 |
| HspAI | GCGC | 1 cut(s) | 1314 |
| Kpn2I | TCCGGA | 1 cut(s) | 32 |
| Ksp22I | TGATCA | 4 cut(s) | 1381, 2131, 2326, 2407 |
| Kzo9I | GATC | 9 cut(s) | 295, 1381, 2065, 2131, 2185, 2272, 2326, 2407, 2428 |
| LmnI | GCTCC | 7 cut(s) | 148, 162, 424, 778, 2170, 2235, 2422 |
| Lsp1109I | GCAGC | 2 cut(s) | 1233, 2366 |
| LweI | GCATC | 9 cut(s) | 26, 177, 205, 331, 942, 1114, 1341, 1424, 1545 |
| MaeI | CTAG | 6 cut(s) | 159, 293, 378, 1265, 1908, 1947 |
| MaeII | ACGT | 5 cut(s) | 283, 711, 849, 2142, 2343 |
| MaeIII | GTNAC | 3 cut(s) | 98, 1291, 2038 |
| MalI | GATC | 9 cut(s) | 297, 1383, 2067, 2133, 2187, 2274, 2328, 2409, 2430 |
| MboI | GATC | 9 cut(s) | 295, 1381, 2065, 2131, 2185, 2272, 2326, 2407, 2428 |
| MfeI | CAATTG | 7 cut(s) | 609, 747, 885, 954, 1023, 1092, 1161 |
| MhlI | GDGCHC | 2 cut(s) | 477, 1283 |
| MluI | ACGCGT | 1 cut(s) | 987 |
| MlyI | GAGTC | 7 cut(s) | 370, 494, 496, 922, 2087, 2126, 2204 |
| MmeI | TCCRAC | 5 cut(s) | 313, 389, 1382, 1632, 2489 |
| Mph1103I | ATGCAT | 1 cut(s) | 1538 |
| MroI | TCCGGA | 1 cut(s) | 32 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1341 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1763, 1910, 2073, 2133, 2280, 2415 |
| MspA1I | CMGCKG | 1 cut(s) | 2357 |
| MspI | CCGG | 3 cut(s) | 33, 1862, 2391 |
| MspR9I | CCNGG | 5 cut(s) | 1389, 1862, 1863, 2255, 2392 |
| MunI | CAATTG | 7 cut(s) | 609, 747, 885, 954, 1023, 1092, 1161 |
| Mva1269I | GAATGC | 1 cut(s) | 532 |
| MvaI | CCWGG | 2 cut(s) | 1389, 2255 |
| MvnI | CGCG | 1 cut(s) | 989 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1252 |
| NciI | CCSGG | 3 cut(s) | 1862, 1863, 2392 |
| NdeII | GATC | 9 cut(s) | 295, 1381, 2065, 2131, 2185, 2272, 2326, 2407, 2428 |
| NlaIV | GGNNCC | 4 cut(s) | 164, 1280, 2249, 2454 |
| NmuCI | GTSAC | 3 cut(s) | 98, 1291, 2038 |
| NsiI | ATGCAT | 1 cut(s) | 1538 |
| NspI | RCATGY | 2 cut(s) | 1536, 2157 |
| OliI | CACNNNNGTG | 1 cut(s) | 1910 |
| PaeI | GCATGC | 1 cut(s) | 1536 |
| PaeR7I | CTCGAG | 1 cut(s) | 452 |
| PagI | TCATGA | 4 cut(s) | 1924, 2068, 2128, 2413 |
| PciI | ACATGT | 1 cut(s) | 2153 |
| PctI | GAATGC | 1 cut(s) | 532 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1341 |
| PfeI | GAWTC | 5 cut(s) | 189, 289, 1337, 1465, 1795 |
| PflFI | GACNNNGTC | 1 cut(s) | 2116 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1741 |
| PkrI | GCNGC | 4 cut(s) | 167, 1227, 1248, 2356 |
| PleI | GAGTC | 7 cut(s) | 369, 493, 496, 922, 2087, 2125, 2204 |
| PpsI | GAGTC | 7 cut(s) | 369, 493, 496, 922, 2087, 2125, 2204 |
| Ppu21I | YACGTR | 1 cut(s) | 2143 |
| PscI | ACATGT | 1 cut(s) | 2153 |
| Psp1406I | AACGTT | 1 cut(s) | 283 |
| Psp6I | CCWGG | 2 cut(s) | 1387, 2253 |
| PspFI | CCCAGC | 2 cut(s) | 1407, 1528 |
| PspGI | CCWGG | 2 cut(s) | 1387, 2253 |
| PspN4I | GGNNCC | 4 cut(s) | 164, 1280, 2249, 2454 |
| PspPI | GGNCC | 2 cut(s) | 90, 2248 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1817, 1849 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1414, 1451 |
| PsyI | GACNNNGTC | 1 cut(s) | 2116 |
| PvuII | CAGCTG | 1 cut(s) | 2357 |
| RsaI | GTAC | 3 cut(s) | 686, 1704, 1835 |
| RsaNI | GTAC | 3 cut(s) | 685, 1703, 1834 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1763, 1910, 2073, 2133, 2280, 2415 |
| SalI | GTCGAC | 1 cut(s) | 1901 |
| SatI | GCNGC | 4 cut(s) | 166, 1226, 1247, 2355 |
| Sau3AI | GATC | 9 cut(s) | 295, 1381, 2065, 2131, 2185, 2272, 2326, 2407, 2428 |
| Sau96I | GGNCC | 2 cut(s) | 90, 2248 |
| ScaI | AGTACT | 2 cut(s) | 1704, 1835 |
| SchI | GAGTC | 7 cut(s) | 370, 494, 496, 922, 2087, 2126, 2204 |
| ScrFI | CCNGG | 5 cut(s) | 1389, 1862, 1863, 2255, 2392 |
| SduI | GDGCHC | 2 cut(s) | 477, 1283 |
| SfaNI | GCATC | 9 cut(s) | 26, 177, 205, 331, 942, 1114, 1341, 1424, 1545 |
| SfcI | CTRYAG | 1 cut(s) | 2174 |
| Sfr274I | CTCGAG | 1 cut(s) | 452 |
| SinI | GGWCC | 1 cut(s) | 2248 |
| SlaI | CTCGAG | 1 cut(s) | 452 |
| SmaI | CCCGGG | 1 cut(s) | 1863 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1763, 1910, 2073, 2133, 2280, 2415 |
| SmlI | CTYRAG | 3 cut(s) | 341, 383, 452 |
| SmoI | CTYRAG | 3 cut(s) | 341, 383, 452 |
| SpeI | ACTAGT | 1 cut(s) | 1907 |
| SphI | GCATGC | 1 cut(s) | 1536 |
| SsiI | CCGC | 3 cut(s) | 166, 1114, 1226 |
| SspI | AATATT | 1 cut(s) | 1843 |
| SspMI | CTAG | 6 cut(s) | 159, 293, 378, 1265, 1908, 1947 |
| StyD4I | CCNGG | 5 cut(s) | 1387, 1860, 1861, 2253, 2390 |
| StyI | CCWWGG | 6 cut(s) | 158, 377, 558, 834, 972, 1946 |
| TaaI | ACNGT | 7 cut(s) | 29, 98, 175, 1232, 1475, 2044, 2075 |
| TaiI | ACGT | 5 cut(s) | 286, 714, 852, 2145, 2346 |
| TaqI | TCGA | 6 cut(s) | 453, 867, 1005, 1772, 1902, 2197 |
| TatI | WGTACW | 2 cut(s) | 1702, 1833 |
| TauI | GCSGC | 2 cut(s) | 168, 1228 |
| TfiI | GAWTC | 5 cut(s) | 189, 289, 1337, 1465, 1795 |
| TscAI | CASTG | 3 cut(s) | 1237, 2080, 2520 |
| TseFI | GTSAC | 3 cut(s) | 98, 1291, 2038 |
| TseI | GCWGC | 2 cut(s) | 1246, 2354 |
| Tsp45I | GTSAC | 3 cut(s) | 98, 1291, 2038 |
| TspGWI | ACGGA | 1 cut(s) | 1254 |
| TspMI | CCCGGG | 1 cut(s) | 1861 |
| TspRI | CASTG | 3 cut(s) | 1237, 2080, 2520 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2116 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1741 |
| VneI | GTGCAC | 1 cut(s) | 473 |
| VpaK11BI | GGWCC | 1 cut(s) | 2248 |
| XapI | RAATTY | 7 cut(s) | 307, 564, 651, 1544, 1666, 1929, 1951 |
| XbaI | TCTAGA | 2 cut(s) | 292, 1264 |
| XceI | RCATGY | 2 cut(s) | 1536, 2157 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 816 |
| XhoI | CTCGAG | 1 cut(s) | 452 |
| XmaI | CCCGGG | 1 cut(s) | 1861 |
| XmaJI | CCTAGG | 3 cut(s) | 158, 377, 1946 |
| XmiI | GTMKAC | 2 cut(s) | 1902, 2139 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1341 |
| XspI | CTAG | 6 cut(s) | 159, 293, 378, 1265, 1908, 1947 |
| ZrmI | AGTACT | 2 cut(s) | 1704, 1835 |
| Zsp2I | ATGCAT | 1 cut(s) | 1538 |